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Relevance to Autism

A de novo missense variant in the NCOA1 gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014). Two de novo variants (a nonsense variant and a second missense variant) in this gene were subsequently identified in ASD probands from the Autism Sequencing Consortium, as were two protein-truncating variants in case samples from the Danish iPSYCH study (Satterstrom et al., 2020). TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified NCOA1 as a candidate gene with a false discovery rate (FDR) between 0.05 and 0.1 (0.05 < FDR 0.1).

Molecular Function

The protein encoded by this gene acts as a transcriptional coactivator for steroid and nuclear hormone receptors. It is a member of the p160/steroid receptor coactivator (SRC) family and like other family members has histone acetyltransferase activity and contains a nuclear localization signal, as well as bHLH and PAS domains. The product of this gene binds nuclear receptors directly and stimulates the transcriptional activities in a hormone-dependent fashion.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
New Candidates for Autism/Intellectual Disability Identified by Whole-Exome Sequencing
ASD, DD, ID
Recent recommendation
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1170R001 
 missense_variant 
 c.845C>G 
 p.Ala282Gly 
 De novo 
  
 Simplex 
 GEN1170R002 
 synonymous_variant 
 c.1017C>T 
 p.Ser339= 
 De novo 
  
 Simplex 
 GEN1170R003 
 synonymous_variant 
 c.4156-104A>G 
  
 De novo 
  
 Simplex 
 GEN1170R004 
 stop_gained 
 c.568C>T 
 p.Arg190Ter 
 De novo 
  
 Simplex 
 GEN1170R005 
 missense_variant 
 c.3399G>A 
 p.Met1133Ile 
 De novo 
  
 Simplex 
 GEN1170R006 
 missense_variant 
 c.3399G>A 
 p.Met1133Ile 
 De novo 
  
 Simplex 
 GEN1170R007 
 synonymous_variant 
 c.1488A>T 
 p.Gly496%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion
 13
 
2
Deletion-Duplication
 10
 
2
Duplication
 1
 
2
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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