Summary Statistics:
ASD Reports: 13
Recent Reports: 0
Annotated variants: 83
Associated CNVs: 11
Evidence score: 4
Gene Score:
Relevance to Autism
Mutations in the NAA10 gene are responsible for Ogden syndrome (OMIM 300855), an X-linked neurodevelopmental disorder characterized by postnatal growth failure, severely delayed psychomotor development, variable dysmorphic features, and hypotonia; a subset of individuals with this syndrome have also presented with autism spectrum disorder or autistic features/stereotypy (Popp et al., 2015; Saunier et al., 2016; Sidhu et al., 2017; Valentine et al., 2018; Cheng et al., 2019; Bader et al., 2020; Maini et al., 2021; McTiernan et al., 2022; Lyon et al., 2023). Mutations in this gene are also responsible for a syndromic form of microphthalmia (MCOPS1; OMIM 309800), an X-linked disorder characterized by unilateral or bilateral microphthalmia or anophthalmia with frequently observed extraocular features that include impaired intellectual development, large and dysplastic ears with skin tags, high-arched or cleft palate, dental anomalies, urogenital anomalies, and skeletal manifestations including lordosis or scoliosis, clinodactyly, syndactyly, brachydactyly, and abnormal thumbs; worsening autistic behavior was observed in one of three brothers with this condition who had a maternally-inherited splice-site variant in the NAA10 gene (Esmailpour et al., 2014). Missense variants in the NAA10 gene have also been identified in ASD probands from WES/WGS studies (Mahjani et al., 2021; Chan et al., 2022).
Molecular Function
N-alpha-acetylation is among the most common post-translational protein modifications in eukaryotic cells. This process involves the transfer of an acetyl group from acetyl-coenzyme A to the alpha-amino group on a nascent polypeptide and is essential for normal cell function. This gene encodes an N-terminal acetyltransferase that functions as the catalytic subunit of the major amino-terminal acetyltransferase A complex.
References
Primary
DD, ID
ASD, ADHD, epilepsy/seizures, stereotypy
Support
Ogden syndrome, DD, ID
ADHD, epilepsy/seizures, stereotypy
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Ogden syndrome, DD, ID, epilepsy/seizures
Support
Ogden syndrome, DD, ID, epilepsy/seizures
Stereotypy
Support
DD, ID
Autistic features, stereotypy
Support
Ogden syndrome, DD, ID
Stereotypy
Support
Syndromic microphthalmia-1, DD, ID
Autistic behavior, epilepsy/seizures
Support
Phenotypic and biochemical analysis of an international cohort of individuals with variants in NAA10 and NAA15.
Ogden syndrome, DD, ID
ASD or autistic features, ADHD, epilepsy/seizures,
Support
Ogden syndrome, DD, epilepsy/seizures
Stereotypy
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Support
Ogden syndrome, ASD, DD, epilepsy/seizures
Support
Ogden syndrome, DD, ID
Autistic features
GEN1397R001
missense_variant
c.29A>G
p.Asp10Gly
De novo
GEN1397R002
missense_variant
c.32T>G
p.Leu11Arg
Unknown
Not maternal
GEN1397R003
missense_variant
c.215T>C
p.Ile72Thr
Familial
Maternal
GEN1397R004
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R005
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R006
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R007
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R008
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R009
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R010
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R011
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R012
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R013
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R014
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R015
missense_variant
c.259G>T
p.Ala87Ser
De novo
GEN1397R016
missense_variant
c.259G>T
p.Ala87Ser
De novo
GEN1397R017
missense_variant
c.259G>T
p.Ala87Ser
De novo
GEN1397R018
missense_variant
c.311C>A
p.Ala104Asp
De novo
GEN1397R019
missense_variant
c.361C>G
p.Leu121Val
De novo
GEN1397R020
missense_variant
c.361C>G
p.Leu121Val
Unknown
GEN1397R021
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R022
missense_variant
c.440T>C
p.Met147Thr
De novo
GEN1397R023
frameshift_variant
c.410_413del
p.Thr137ArgfsTer6
Familial
Maternal
Simplex
GEN1397R024
splice_site_variant
c.426+2T>A
Familial
Maternal
Multiplex
GEN1397R025
missense_variant
c.319G>T
p.Val107Phe
De novo
Simplex
GEN1397R026
missense_variant
c.346C>T
p.Arg116Trp
De novo
Simplex
GEN1397R027
missense_variant
c.346C>T
p.Arg116Trp
De novo
GEN1397R028
missense_variant
c.384T>A
p.Phe128Leu
De novo
GEN1397R029
missense_variant
c.384T>A
p.Phe128Leu
De novo
GEN1397R030
missense_variant
c.382T>A
p.Phe128Ile
De novo
GEN1397R031
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R032
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R033
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R034
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R035
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R036
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R037
missense_variant
c.247C>T
p.Arg83Cys
De novo (germline mosaicism)
Multiplex
GEN1397R038
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R039
missense_variant
c.346C>T
p.Arg116Trp
De novo
Simplex
GEN1397R040
missense_variant
c.47A>C
p.His16Pro
De novo
Simplex
GEN1397R041
missense_variant
c.247C>T
p.Arg83Cys
De novo
Simplex
GEN1397R042
missense_variant
c.247C>T
p.Arg83Cys
Unknown
GEN1397R043
missense_variant
c.16G>C
p.Ala6Pro
Familial
Maternal
Simplex
GEN1397R044
missense_variant
c.235C>T
p.Arg79Cys
Familial
Maternal
Extended multiplex
GEN1397R045
missense_variant
c.384T>G
p.Phe128Leu
De novo
Simplex
GEN1397R046
missense_variant
c.386A>C
p.Gln129Pro
De novo
Simplex
GEN1397R047
missense_variant
c.469G>A
p.Glu157Lys
Familial
Maternal
Simplex
GEN1397R048
missense_variant
c.346C>G
p.Arg116Gly
De novo
GEN1397R049a
missense_variant
c.22C>T
p.Pro8Ser
De novo
GEN1397R049b
missense_variant
c.30C>G
p.Asp10Glu
De novo
GEN1397R050
missense_variant
c.47A>C
p.His16Pro
De novo
GEN1397R051
missense_variant
c.92A>G
p.Tyr31Cys
De novo
GEN1397R052
missense_variant
c.215T>C
p.Ile72Thr
Familial
Maternal
GEN1397R053
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R054
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R055
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R056
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R057
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R058
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R059
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R060
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R061
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R062
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R063
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R064
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R065
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R066
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R067
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R068
missense_variant
c.247C>T
p.Arg83Cys
De novo
GEN1397R069
missense_variant
c.359A>C
p.His120Pro
De novo
GEN1397R070
missense_variant
c.367T>C
p.Ser123Pro
De novo
GEN1397R071
missense_variant
c.383T>C
p.Phe128Ser
De novo
GEN1397R072
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R073
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R074
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R075
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R076
missense_variant
c.384T>G
p.Phe128Leu
De novo
GEN1397R077
missense_variant
c.440T>C
p.Met147Thr
De novo
GEN1397R078
missense_variant
c.440T>C
p.Met147Thr
De novo
GEN1397R079
missense_variant
c.445C>T
p.Arg149Trp
De novo
GEN1397R080
frameshift_variant
c.455_458del
p.Thr152ArgfsTer6
Familial
Maternal
GEN1397R081
frameshift_variant
c.499_500del
p.Ser167GlnfsTer23
Familial
Maternal
GEN1397R082
missense_variant
c.128A>C
p.Tyr43Ser
Familial
Maternal
Multiplex
No Common Variants Available
X
Deletion-Duplication
21
X
Deletion-Duplication
78
No Animal Model Data Available
No Interactions Available