Summary Statistics:
ASD Reports: 39
Recent Reports: 8
Annotated variants: 147
Associated CNVs: 6
Evidence score: 5
Gene Score: 1
Relevance to Autism
A de novo LoF variant and a de novo likely damaging missense variant in the MYT1L gene were identified in two unrelated ASD probands from 2,270 trios screened by the Autism Sequencing Consortium in De Rubeis et al., 2017 (PMID 25363760). Analysis of rare coding variation in 3,871 ASD cases and 9,937 ancestry-matched or paternal controls from the Autism Sequencing Consortium (ASC) in this report identified MYT1L as a gene meeting high statistical significance with a 0.05 < FDR 0.1, meaning that this gene had a 90% chance of being a true autism gene. De novo LoF variants in MYT1L were also identified in two sporadic cases in De Rocker et al., 2015: one in a patient presenting with ASD and intellectual disability, and the other in a patient presenting with intellectual disability and autistic features (PMID 25232846). Two additional de novo LoF variants in the MYT1L gene were identified in a Chinese ASD proband from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Wang et al., 2016 (PMID 27824329), and an ASD proband from the ASD: Genomes to Outcome Study cohort in Yuen et al., 2017 (PMID 28263302). MYT1L has been proposed as a causative gene for intellectual disability and other phenotypes observed in cases with 2p25.3 deletions (PMID 21990140, 25232846). Copy number variants affecting the MYT1L gene have also been implicated in schizophrenia (Vrijenhoek et al., 2008; Lee et al., 2012; Van Den Bossche et al., 2013). A de novo protein-truncating variant in MYT1L was identified in an ASD proband from the Autism Sequencing Consortium in Satterstrom et al., 2020; subsequent TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in this report identified MYT1L as a candidate gene with a false discovery rate (FDR) 0.01. Coursimault et al., 2021 described 40 previously unreported cases with pathogenic or likely pathogenic variants in the MYT1L gene; developmental delay, intellectual disability, and behavioral disorders were frequently observed in individuals with MYT1L variants, and a formal or informal diagnosis of autism spectrum disorder was made in 17/40 individuals (43%). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified MYT1L as a gene reaching exome-wide significance (P < 2.5E-06).
Molecular Function
May function as a panneural transcription factor associated with neuronal differentiation and may play a role in the development of neurons and oligodendroglia in the CNS.
References
Primary
Germline mosaic transmission of a novel duplication of PXDN and MYT1L to two male half-siblings with autism.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
MYT1L is a candidate gene for intellectual disability in patients with 2p25.3 (2pter) deletions.
ID
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
DD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide detection of tandem DNA repeats that are expanded in autism
ASD
Support
Common SNPs in myelin transcription factor 1-like (MYT1L): association with major depressive disorder in the Chinese Han population.
MDD
Support
Genetic investigation of syndromic forms of obesity
ID
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD, ID
Support
Nine newly identified individuals refine the phenotype associated with MYT1L mutations.
Autosomal dominant mental retardation-39 (MRD39)
ASD
Support
Myt1l haploinsufficiency leads to obesity and multifaceted behavioral alterations in mice
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Postnatal age-differential ASD-like transcriptomic, synaptic, and behavioral deficits in Myt1l-mutant mice
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Microcephaly
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Identification of rare copy number variants in high burden schizophrenia families.
SCZ
Support
Integrating de novo and inherited variants in 42
ASD
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
ASD, DD, ID, epilepsy/seizures
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
Microduplications disrupting the MYT1L gene (2p25.3) are associated with schizophrenia.
SCZ
Support
Comprehensive genome sequencing analyses identify novel gene mutations and copy number variations associated with infant developmental delay or intellectual disability (DD/ID)
ID
Support
A novel MYT1L mutation in a patient with severe early-onset obesity and intellectual disability.
DD, ID
Obesity, behavioral abnormalities
Highly Cited
Recurrent CNVs disrupt three candidate genes in schizophrenia patients.
SCZ
Recent Recommendation
Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates.
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
ASD
Recent Recommendation
Refinement of the critical 2p25.3 deletion region: the role of MYT1L in intellectual disability and obesity.
DD, ID
ASD
Recent Recommendation
MYT1L-associated neurodevelopmental disorder: description of 40 new cases and literature review of clinical and molecular aspects
DD
ASD, ADHD, ID, epilepsy/seizures, stereotypy, lear
Recent Recommendation
A MYT1L syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation
Autosomal dominant mental retardation-39
Recent Recommendation
MYT1L mutations cause intellectual disability and variable obesity by dysregulating gene expression and development of the neuroendocrine hypothala...
DD, ID
ASD
GEN533R001
copy_number_gain
Familial
Maternal
Multiplex
GEN533R002
copy_number_gain
Familial
Paternal
Multiplex
GEN533R003
copy_number_gain
GEN533R004
copy_number_gain
GEN533R005
copy_number_loss
Unknown
Multiplex
GEN533R006
copy_number_loss
De novo
GEN533R007
copy_number_loss
De novo
GEN533R008
copy_number_loss
De novo
GEN533R009
splice_site_variant
c.2642+1G>A
De novo
Simplex
GEN533R010
stop_gained
c.1917T>G
p.Tyr639Ter
De novo
Simplex
GEN533R011
stop_gained
c.591C>A
p.Tyr197Ter
De novo
Simplex
GEN533R012
missense_variant
c.1566C>G
p.His522Gln
De novo
Simplex
GEN533R013
missense_variant
c.3052G>T
p.Val1018Phe
Familial
Paternal
Simplex
GEN533R014
missense_variant
c.995G>A
p.Arg332Gln
Familial
Maternal
Simplex
GEN533R015
frameshift_variant
c.3333del
p.Glu1111AspfsTer14
Unknown
Unknown
GEN533R016
missense_variant
c.770G>A
p.Gly257Glu
Unknown
Unknown
GEN533R017
missense_variant
c.995G>A
p.Arg332Gln
Unknown
Unknown
GEN533R018
missense_variant
c.565G>A
p.Glu189Lys
Unknown
Unknown
GEN533R019
missense_variant
c.2990A>T
p.Glu997Val
Unknown
Unknown
GEN533R020
missense_variant
c.1510T>C
p.Cys504Arg
De novo
Simplex
GEN533R021
stop_gained
c.2542C>T
p.Gln848Ter
De novo
GEN533R022
translocation
De novo
GEN533R023
translocation
De novo
GEN533R024
frameshift_variant
c.761_764del
p.Asp254ValfsTer14
De novo
Multiplex
GEN533R025
frameshift_variant
CA>C
p.Leu381fs
De novo
GEN533R026
missense_variant
c.1706G>A
p.Arg569Gln
De novo
GEN533R027
missense_variant
c.1678C>T
p.His560Tyr
De novo
GEN533R028
splice_site_variant
c.1709+1G>A
De novo
GEN533R029
missense_variant
c.1559T>C
p.Leu520Pro
De novo
GEN533R030
frameshift_variant
c.2236del
p.Met746CysfsTer5
De novo
GEN533R031
stop_gained
c.2677C>T
p.Arg893Ter
De novo
GEN533R032
missense_variant
c.1570C>A
p.His524Asn
De novo
GEN533R033
missense_variant
c.1579G>A
p.Gly527Arg
De novo
GEN533R034
copy_number_loss
Unknown
GEN533R035
frameshift_variant
c.2215_2224del
p.Leu739AlafsTer9
De novo
Simplex
GEN533R036
missense_variant
c.1579G>C
p.Gly527Arg
De novo
Simplex
GEN533R037
stop_gained
c.2227G>T
p.Glu743Ter
De novo
Simplex
GEN533R038
frameshift_variant
c.2579del
p.Val860GlyfsTer20
De novo
Simplex
GEN533R039
synonymous_variant
c.2319G>A
p.Leu773=
De novo
Simplex
GEN533R040
synonymous_variant
c.2460C>T
p.Pro820=
De novo
Simplex
GEN533R041
stop_gained
c.1531G>T
p.Gly511Ter
De novo
Simplex
GEN533R042
splice_site_variant
c.2769-2A>G
De novo
Simplex
GEN533R043
missense_variant
c.1711G>A
p.Gly571Arg
De novo
Simplex
GEN533R044
stop_gained
c.223C>T
p.Arg75Ter
De novo
Simplex
GEN533R045
missense_variant
c.1700G>C
p.Arg567Pro
De novo
Simplex
GEN533R046
stop_gained
c.3118A>T
p.Lys1040Ter
Familial
Paternal
Simplex
GEN533R047
copy_number_loss
De novo
Simplex
GEN533R048
copy_number_loss
De novo
Simplex
GEN533R049
minisatellite
Unknown
Unknown
GEN533R050
stop_gained
c.2401C>T
p.Gln801Ter
De novo
GEN533R051
missense_variant
c.2345C>T
p.Pro782Leu
De novo
GEN533R052
missense_variant
c.2275G>A
p.Ala759Thr
De novo
GEN533R053
stop_gained
c.223C>T
p.Arg75Ter
De novo
GEN533R054
frameshift_variant
c.3329_3332del
p.Ile1110SerfsTer14
Unknown
GEN533R055
frameshift_variant
c.3329_3332del
p.Ile1110SerfsTer14
Unknown
GEN533R056
missense_variant
c.1717G>A
p.Gly573Arg
Unknown
GEN533R057
missense_variant
c.955G>A
p.Asp319Asn
Unknown
GEN533R058
missense_variant
c.3200A>T
p.Gln1067Leu
Unknown
GEN533R059
missense_variant
c.3200A>T
p.Gln1067Leu
Unknown
GEN533R060
missense_variant
c.1592C>T
p.Pro531Leu
Unknown
GEN533R061
frameshift_variant
c.3202_3205del
p.Leu1068MetfsTer7
Unknown
GEN533R062
splice_site_variant
c.1618+1G>A
Unknown
GEN533R063
splice_site_variant
c.2519_2520+3del
Unknown
GEN533R064
stop_gained
c.3190G>T
p.Glu1064Ter
Unknown
GEN533R065
stop_gained
c.1975C>T
p.Arg659Ter
Unknown
GEN533R066
missense_variant
c.2770C>T
p.Arg924Trp
Unknown
GEN533R067
missense_variant
c.1954G>A
p.Asp652Asn
Unknown
GEN533R068
missense_variant
c.1954G>A
p.Asp652Asn
Unknown
GEN533R069
missense_variant
c.1151G>A
p.Arg384Gln
Unknown
GEN533R070
missense_variant
c.1582_1584delinsGGG
p.Ser528Gly
Unknown
GEN533R071
missense_variant
c.1582_1584delinsGGG
p.Ser528Gly
Unknown
GEN533R072
missense_variant
c.1582_1584delinsGGG
p.Ser528Gly
Unknown
GEN533R073
missense_variant
c.1675G>A
p.Gly559Arg
Unknown
GEN533R074
missense_variant
c.1706G>A
p.Arg569Gln
De novo
GEN533R075
missense_variant
c.1706G>A
p.Arg569Gln
De novo
Simplex
GEN533R076
missense_variant
c.1509G>C
p.Glu503Asp
Unknown
GEN533R077
frameshift_variant
c.2182del
p.Ala728ArgfsTer23
De novo
GEN533R078
missense_variant
c.1712G>A
p.Gly571Glu
De novo
GEN533R079
missense_variant
c.1579G>A
p.Gly527Arg
De novo
GEN533R080
stop_gained
c.52C>T
p.Arg18Ter
De novo
GEN533R081
stop_gained
c.535C>T
p.Arg179Ter
Familial
Maternal
GEN533R082
missense_variant
c.3070C>A
p.Arg1024Ser
De novo
GEN533R083
frameshift_variant
c.2234del
p.Glu745GlyfsTer6
De novo
GEN533R084
frameshift_variant
c.1174dup
p.Arg392ProfsTer16
De novo
GEN533R085
missense_variant
c.1706G>A
p.Arg569Gln
De novo
GEN533R086
missense_variant
c.1537G>T
p.Gly513Ter
De novo
GEN533R087
frameshift_variant
c.317del
p.Glu106GlyfsTer68
De novo
GEN533R088
missense_variant
c.1700G>A
p.Arg567Gln
De novo
GEN533R089
stop_gained
c.1789C>T
p.Gln597Ter
De novo
GEN533R090
frameshift_variant
c.470_471del
p.Glu157GlyfsTer31
De novo
GEN533R091
frameshift_variant
c.2005del
p.Asp669IlefsTer35
De novo
GEN533R092
frameshift_variant
c.2720del
p.Thr907SerfsTer33
De novo
GEN533R093
splice_region_variant
c.2032+3A>G
De novo
GEN533R094
missense_variant
c.1642T>C
p.Cys548Arg
De novo
GEN533R095
missense_variant
c.1579G>C
p.Gly527Arg
De novo
GEN533R096
missense_variant
c.1510T>C
p.Cys504Arg
De novo
GEN533R097
frameshift_variant
c.181del
p.Arg61GlufsTer20
De novo
GEN533R098
frameshift_variant
c.2924_2925ins22
p.Cys976ArgfsTer92
De novo
GEN533R099
frameshift_variant
c.2665_2666delinsT
p.Asp889SerfsTer51
De novo
GEN533R100
stop_gained
c.3151C>T
p.Gln1051Ter
De novo
GEN533R101
splice_site_variant
c.2769-1G>T
De novo
GEN533R102
stop_gained
c.1946dup
p.Asn649LysfsTer28
De novo
GEN533R103
missense_variant
c.1727C>T
p.Ala576Val
De novo
GEN533R104
missense_variant
c.505G>A
p.Glu169Lys
De novo
GEN533R105
stop_gained
c.2824G>T
p.Glu942Ter
De novo
GEN533R106
missense_variant
c.625G>C
p.Gly209Arg
De novo
GEN533R107
missense_variant
c.625G>A
p.Gly209Ser
De novo
GEN533R108
missense_variant
c.1700G>A
p.Arg567Gln
De novo
GEN533R109
splice_site_variant
c.2032+5G>A
Familial
Paternal
GEN533R110
frameshift_variant
c.1801del
p.Ser601ArgfsTer11
De novo
GEN533R111
missense_variant
c.1657T>A
p.Cys553Ser
De novo
GEN533R112
stop_gained
c.2671C>T
p.Arg891Ter
De novo
GEN533R113
stop_gained
c.373G>T
p.Glu125Ter
Unknown
Not maternal
GEN533R114
copy_number_loss
De novo
GEN533R115
frameshift_variant
c.832del
p.Glu278LysfsTer3
Unknown
Not paternal
GEN533R116
frameshift_variant
c.2117dup
p.Gly707ArgfsTer58
De novo
GEN533R117
synonymous_variant
c.1818G>A
p.Arg606%3D
Unknown
GEN533R118
stop_gained
c.2990C>A
p.Ser997Ter
De novo
Simplex
GEN533R119
frameshift_variant
c.2711dup
p.Cys905ValfsTer7
De novo
GEN533R120
missense_variant
c.1687A>G
p.Ser563Gly
De novo
GEN533R121
missense_variant
c.1657T>C
p.Cys553Arg
De novo
GEN533R122
splice_site_variant
c.2642+1G>A
De novo
GEN533R123
missense_variant
c.1706G>A
p.Arg569Gln
De novo
Simplex
GEN533R124
missense_variant
c.1931C>A
p.Thr644Asn
De novo
Simplex
GEN533R125
missense_variant
c.1548C>A
p.His516Gln
De novo
Simplex
GEN533R126
missense_variant
c.1592C>T
p.Pro531Leu
De novo
GEN533R127
missense_variant
c.2222C>T
p.Thr741Met
De novo
GEN533R128
stop_gained
c.535C>T
p.Arg179Ter
De novo
GEN533R129
copy_number_gain
Familial
Paternal
GEN533R130
copy_number_gain
Unknown
GEN533R131
copy_number_gain
Unknown
GEN533R132
copy_number_gain
Unknown
GEN533R133
copy_number_gain
Unknown
GEN533R134
copy_number_gain
Familial
Paternal
GEN533R135
copy_number_gain
Unknown
GEN533R136
copy_number_gain
Familial
Maternal
GEN533R137
copy_number_gain
Unknown
Multiplex
GEN533R138
copy_number_gain
Unknown
GEN533R139
copy_number_gain
De novo
GEN533R140
copy_number_gain
Familial
Paternal
GEN533R141
copy_number_gain
Unknown
GEN533R142
copy_number_gain
Unknown
GEN533R143
copy_number_gain
Familial
Paternal
GEN533R144
stop_gained
c.457G>T
p.Glu153Ter
De novo
Simplex
GEN533R145
missense_variant
c.1046G>T
p.Arg349Met
Unknown
Simplex
GEN533R146
missense_variant
c.1548C>A
p.His516Gln
De novo
Simplex
GEN533C001
synonymous_variant
rs3748989
c.291G>A
p.(=)
1139 MDD patients and 1140 controls of Chinese Han origin
Discovery
2
Deletion-Duplication
45
Summary Statistics:
# of Reports: 1
# of Models: 2
External Links
Model Summary
Mytl1a or mytl1b knockdown zebrafish morphants manifested loss of oxytocin expression in the preoptic neuroendocrine area.
References
Primary
MYT1L mutations cause intellectual disability and variable obesity by dysregulating gene expression and development of the neuroendocrine hypothala...
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Mytl1a morpholinos were injected into zebrafish embryos at the 1- or 2-cell stage.
Allele Type: Knockdown
Strain of Origin: Not specified
Genetic Background: Not specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: PMID 26833329
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Mytl1a and mytl1b morpholinos were injected into zebrafish embryos at the 1- or 2-cell stage.
Allele Type: Knockdown
Strain of Origin: Not specified
Genetic Background: Not specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: PMID 26833329
Neuronal number: oxytocin expressing1
Decreased
View More
Description: Mytl1a morphants show absence of oxytocin expression in the neuroendocrine preoptic area compared to controls.
In situ hybridization (ish)
1 to 2-cell stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Neuronal number: oxytocin expressing1
Decreased
View More
Description: Mytl1a and Mytlb double morphants show absence of oxytocin expression in the neuroendocrine preoptic area compared to controls.
In situ hybridization (ish)
1 to 2-cell stage
Decreased
View More
Description: Mytl1a and Mytlb double morphants show absence of AVP expression in the neuroendocrine preoptic area compared to controls.
In situ hybridization (ish)
1 to 2-cell stage
No change
In situ hybridization (ish)
1 to 2-cell stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
No Interactions Available