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Relevance to Autism

De novo missense variants in the MYH9 gene have been identified in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014) and the SPARK cohort (Wang et al., 2020), as well as in probands from the German Mental Retardation Network (Rauch et al., 2012) and the Deciphering Developmental Disorders 2017 study. Single-molecular molecular inversion probe (smMIP) sequencing of 3,363 probands from cohorts with a primary diagnosis of ASD in Wang et al., 2020 identified 26 individuals with missense variants with CADD scores 30 in the MYH9 gene. A rare coding-synonymous variant in the MYH9 gene was identifed within a risk haplotype on chromosome 22 that co-segregated with ASD in a large, 47-member, multigenerational pedigree with 11 cases of autism spectrum disorder (Marchani et al., 2012). Functional analysis of the ASD-associated p.Arg1571Gln missense variant, which was originally identified in an SSC proband, in Drosophila in Marcogliese et al., 2022 demonstrated a gain-of-function effect (increased lethality when overexpressed compared to reference protein; a gain-of-function effect was also observed in wing-size-based-assay).

Molecular Function

This gene encodes a conventional non-muscle myosin; this protein should not be confused with the unconventional myosin-9a or 9b (MYO9A or MYO9B). The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD
DD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Identification of rare variants from exome sequence in a large pedigree with autism
ASD
Support
Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study.
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1230R001 
 missense_variant 
 c.4712G>A 
 p.Arg1571Gln 
 De novo 
  
 Simplex 
 GEN1230R002 
 missense_variant 
 c.4726C>T 
 p.Arg1576Trp 
 De novo 
  
  
 GEN1230R003 
 missense_variant 
 c.3914C>T 
 p.Ala1305Val 
 De novo 
  
  
 GEN1230R004 
 missense_variant 
 c.2369G>A 
 p.Cys790Tyr 
 De novo 
  
  
 GEN1230R005 
 missense_variant 
 c.2279C>T 
 XP_005261671.1:p.Ala760Val 
 Familial 
 Maternal 
  
 GEN1230R006 
 missense_variant 
 c.4027C>T 
 XP_005261671.1:p.Arg1343Trp 
 Familial 
 Maternal 
  
 GEN1230R007 
 missense_variant 
 c.4027C>T 
 XP_005261671.1:p.Arg1343Trp 
 Familial 
 Maternal 
  
 GEN1230R008 
 missense_variant 
 c.4838G>A 
 XP_005261671.1:p.Arg1613Gln 
 Familial 
 Maternal 
  
 GEN1230R009 
 missense_variant 
 c.5018G>A 
 XP_005261671.1:p.Arg1673His 
 Familial 
 Paternal 
  
 GEN1230R010 
 missense_variant 
 c.5758G>A 
 XP_005261671.1:p.Glu1920Lys 
 Familial 
 Paternal 
  
 GEN1230R011 
 missense_variant 
 c.5693G>A 
 p.Arg1898His 
 Familial 
 Paternal 
  
 GEN1230R012 
 missense_variant 
 c.73G>A 
 p.Asp25Asn 
 Familial 
 Paternal 
 Simplex 
 GEN1230R013 
 missense_variant 
 c.3709G>A 
 XP_005261671.1:p.Glu1237Lys 
 Familial 
 Paternal 
  
 GEN1230R014 
 missense_variant 
 c.3709G>A 
 XP_005261671.1:p.Glu1237Lys 
 Familial 
 Paternal 
  
 GEN1230R015 
 missense_variant 
 c.3736G>A 
 XP_005261671.1:p.Glu1246Lys 
 Familial 
 Maternal 
 Simplex 
 GEN1230R016 
 missense_variant 
 c.2311G>A 
 XP_005261671.1:p.Asp771Asn 
 Unknown 
  
  
 GEN1230R017 
 missense_variant 
 c.5725C>T 
 XP_005261671.1:p.Arg1909Trp 
 Unknown 
  
  
 GEN1230R018 
 missense_variant 
 c.5311G>A 
 XP_005261671.1:p.Asp1771Asn 
 Unknown 
  
  
 GEN1230R019 
 missense_variant 
 c.5311G>A 
 XP_005261671.1:p.Asp1771Asn 
 Unknown 
  
  
 GEN1230R020 
 missense_variant 
 c.5692C>T 
 p.Arg1898Cys 
 Unknown 
  
  
 GEN1230R021 
 missense_variant 
 c.2140C>T 
 XP_005261671.1:p.Arg714Cys 
 Unknown 
  
  
 GEN1230R022 
 missense_variant 
 c.2269G>A 
 p.Gly757Ser 
 Unknown 
  
  
 GEN1230R023 
 missense_variant 
 c.5743C>T 
 XP_005261671.1:p.Arg1915Trp 
 Unknown 
  
  
 GEN1230R024 
 missense_variant 
 c.4361G>A 
 XP_005261671.1:p.Arg1454His 
 Unknown 
  
 Simplex 
 GEN1230R025 
 missense_variant 
 c.1048G>A 
 p.Gly350Ser 
 Unknown 
  
  
 GEN1230R026 
 missense_variant 
 c.4511G>A 
 XP_005261671.1:p.Arg1504Gln 
 Unknown 
  
  
 GEN1230R027 
 missense_variant 
 c.3736G>A 
 XP_005261671.1:p.Glu1246Lys 
 Unknown 
  
  
 GEN1230R028 
 missense_variant 
 c.2257G>A 
 XP_005261671.1:p.Gly753Ser 
 Unknown 
  
  
 GEN1230R029 
 missense_variant 
 c.2257G>A 
 XP_005261671.1:p.Gly753Ser 
 Unknown 
  
  
 GEN1230R030 
 missense_variant 
 c.934G>A 
 p.Gly312Arg 
 Unknown 
  
 Simplex 
 GEN1230R031 
 stop_gained 
 c.5089A>T 
 XP_005261671.1:p.Lys1697Ter 
 Unknown 
  
  
 GEN1230R032 
 missense_variant 
 c.4027C>T 
 XP_005261671.1:p.Arg1343Trp 
 Unknown 
  
  
 GEN1230R033 
 missense_variant 
 c.4838G>A 
 XP_005261671.1:p.Arg1613Gln 
 Unknown 
  
  
 GEN1230R034 
 missense_variant 
 c.2570C>A 
 XP_005261671.1:p.Pro857Gln 
 Unknown 
  
  
 GEN1230R035 
 missense_variant 
 c.4028G>A 
 XP_005261671.1:p.Arg1343Gln 
 Unknown 
  
  
 GEN1230R036 
 missense_variant 
 c.943G>T 
 p.Asp315Tyr 
 Unknown 
  
  
 GEN1230R037 
 missense_variant 
 c.3278C>T 
 XP_005261671.1:p.Ala1093Val 
 Unknown 
  
  
 GEN1230R038 
 missense_variant 
 c.3101A>C 
 p.Glu1034Ala 
 Unknown 
  
  
 GEN1230R039 
 missense_variant 
 c.1279C>T 
 p.Arg427Cys 
 Unknown 
  
  
 GEN1230R040 
 missense_variant 
 c.575C>T 
 p.Ala192Val 
 Unknown 
  
  
 GEN1230R041 
 missense_variant 
 c.4789C>T 
 XP_005261671.1:p.Arg1597Trp 
 Unknown 
  
  
 GEN1230R042 
 missense_variant 
 c.4789C>T 
 XP_005261671.1:p.Arg1597Trp 
 Unknown 
  
  
 GEN1230R043 
 missense_variant 
 c.4789C>T 
 XP_005261671.1:p.Arg1597Trp 
 Unknown 
  
  
 GEN1230R044 
 missense_variant 
 c.4771G>A 
 p.Val1591Met 
 Unknown 
  
  
 GEN1230R045 
 missense_variant 
 c.3166C>T 
 XP_005261671.1:p.Arg1056Cys 
 Unknown 
  
  
 GEN1230R046 
 missense_variant 
 c.3736G>A 
 XP_005261671.1:p.Glu1246Lys 
 Unknown 
  
  
 GEN1230R047 
 missense_variant 
 c.934G>A 
 p.Gly312Arg 
 Unknown 
  
  
 GEN1230R048 
 missense_variant 
 c.1088C>T 
 p.Ala363Val 
 Unknown 
  
  
 GEN1230R049 
 missense_variant 
 c.1088C>T 
 p.Ala363Val 
 Unknown 
  
  
 GEN1230R050 
 missense_variant 
 c.166G>A 
 p.Val56Met 
 Unknown 
  
  
 GEN1230R051 
 missense_variant 
 c.5707G>A 
 p.Ala1903Thr 
 De novo 
  
 Simplex 
 GEN1230R052 
 missense_variant 
 c.1933A>G 
 p.Thr645Ala 
 De novo 
  
 Simplex 
 GEN1230R053 
 synonymous_variant 
 c.4008C>T 
 p.Asp1336%3D 
 Familial 
  
 Extended multiplex 
 GEN1230R054 
 synonymous_variant 
 c.5277C>T 
 p.Ile1759%3D 
 De novo 
  
  
 GEN1230R055 
 synonymous_variant 
 c.3816C>T 
 p.Ala1272%3D 
 De novo 
  
  
 GEN1230R056 
 synonymous_variant 
 c.3756G>A 
 p.Ala1252%3D 
 De novo 
  
  
 GEN1230R057 
 missense_variant 
 c.3547C>T 
 p.His1183Tyr 
 De novo 
  
  
 GEN1230R058 
 synonymous_variant 
 c.3195C>T 
 p.Ala1065%3D 
 De novo 
  
  
 GEN1230R059 
 synonymous_variant 
 c.4407G>A 
 p.Ala1469%3D 
 De novo 
  
  
 GEN1230R060 
 missense_variant 
 c.506C>G 
 p.Ser169Cys 
 De novo 
  
  
 GEN1230R061 
 splice_region_variant 
 c.-19-7C>A 
  
 De novo 
  
  
 GEN1230R062 
 missense_variant 
 c.5189G>A 
 p.Arg1730His 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
22
Duplication
 1
 
22
Duplication
 1
 
22
Deletion-Duplication
 23
 
22
Deletion
 4
 
22
Duplication
 1
 

No Animal Model Data Available

 

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