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Relevance to Autism

A de novo nonsense variant in the MLANA gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014), while transmitted protein-truncating variants (PTVs) in this gene were observed in ASD probands from the Autism Sequencing Consortium and the iHART cohort (De Rubeis et al., 2014; Ruzzo et al., 2019). TADA analysis of de novo and transmitted variants from iHART, the Simons Simplex Collection, the Autism Sequencing Consortium, and the Autism Genome Project in Ruzzo et al., 2019 identified MLANA as an ASD candidate gene with a false discovery rate (FDR) < 0.1.

Molecular Function

Involved in melanosome biogenesis by ensuring the stability of GPR143. Plays a vital role in the expression, stability, trafficking, and processing of melanocyte protein PMEL, which is critical to the formation of stage II melanosomes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1100R001 
 stop_gained 
 c.76G>T 
 p.Glu26Ter 
 De novo 
  
 Simplex 
 GEN1100R002 
 stop_gained 
 c.151C>T 
 p.Arg51Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1100R003 
 frameshift_variant 
 c.32_42del 
 p.Gly11GlufsTer11 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Deletion
 2
 
9
Deletion-Duplication
 32
 
9
Duplication
 3
 
9
Duplication
 3
 
9
Duplication
 7
 
9
Duplication
 3
 
9
Duplication
 2
 
9
Duplication
 4
 
9
Deletion
 3
 
9
N/A
 5
 
9
Deletion
 10
 
9
Deletion
 7
 
9
Duplication
 3
 
9
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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