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Relevance to Autism

1p21.3 microdeletions affecting MIR137 have been identified in individuals with ASD (Carter et al., 2011), intellectual disability (Willemsen et al., 2011), and syndromic obesity (D'Angelo et al., 2015; Tucci et al., 2016). MIR137 resides within a locus on chromosome 1p21.3 that was found to be highly associated with schizophrenia in meta-analyses combining multiple genome-wide association studies (Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium 2011; Cross-Disorder Group of the Psychiatric Genomics Consortium 2013; Ripke et al., 2013; Schizophrenia Working Group of the Psychiatric Genomics Consortium 2014). A rare functional enhancer variant approximately 3.6 kb upstream of MIR137 (1:g.98515539A>T) was found to be associated with schizophrenia and bipolar disorder (Duan et al., 2014). Partial loss of Mir137 in heterozygous conditional-knockout mice was found to result in dysregulated synaptic plasticity, repetitive behavior, and impaired learning and social behavior; treatment with the Pde10a inhibitor papaverine or knockdown of Pde10a ameliorated these deficits (Cheng et al., 2018).

Molecular Function

microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Hemizygous deletions on chromosome 1p21.3 involving the DPYD gene in individuals with autism spectrum disorder.
ASD
Positive Association
Genome-wide association study identifies five new schizophrenia loci.
SCZ
Positive Association
Biological insights from 108 schizophrenia-associated genetic loci.
SCZ
Positive Association
Genome-wide association analysis identifies 13 new risk loci for schizophrenia.
SCZ
Positive Association
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
ASD, ADHD, BPD, MDD, SCZ
Support
Two New Cases of 1p21.3 Deletions and an Unbalanced Translocation t(8;12) among Individuals with Syndromic Obesity.
Obesity
DD, ID, autistic features
Support
A rare functional noncoding variant at the GWAS-implicated MIR137/MIR2682 locus might confer risk to schizophrenia and bipolar disorder.
SCZ, BPD
Support
Chromosome 1p21.3 microdeletions comprising DPYD and MIR137 are associated with intellectual disability.
ID
Autistic features
Support
MIR137 is the key gene mediator of the syndromic obesity phenotype of patients with 1p21.3 microdeletions.
Obesity
ASD, DD, ID
Recent recommendation
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1049R001 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1049R002 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN1049R003 
 copy_number_loss 
  
  
 Familial 
  
 Multiplex 
 GEN1049R004 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R005 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R006 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R007 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN1049R008 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1049R009 
 5KB_upstream_variant 
  
  
  
  
  
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 16
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Deletion
 8
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Deletion
 4
 
1
Duplication
 1
 

Model Summary

Mice with homozygous germline KO of miR-137 or neural selective CKO show postnatal lethality with decrease in body and brain size, while heterozygotes show deficits in synaptic plasticity and learning, repetitive behavior, impaired social interaction, and elevated PDE10a. Treatment with Pde10a or KD of Pde10a rescues deficits in mir137 HT mice.

References

Type
Title
Author, Year
Primary
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.
Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mir137 gene was disrupted via homologous recombination in ES cells, where two loxP sites were inserted -2kb unstream and -0.6kb downstream of the Mir137 gene. Conditional ready mice were crossed with Zp3-Cre mic to delete Mir137 in the germline.
Allele Type: Knockout
Strain of Origin: Not reported
Genetic Background: 129S6/SvEvTac
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synapse density1
Increased
 Immunohistochemistry
 P18, 8 weeks
Brain size1
Decreased
 Measurement of tissue weight
 P16
Renal morphology1
Decreased
 Gross necroscopy
 P14
Mortality/lethality1
Decreased
 Kaplan-meier survival curve
 P0-3.4 months
Size/growth1
Decreased
 Body weight measurement
 P16
Digestive system development1
Decreased
 Gross necroscopy
 P14
Respiratory system development1
Decreased
 Gross necroscopy
 P14
Cardiovascular development and function1
Decreased
 Gross necroscopy
 P14
Gene expression1
Abnormal
 Tandem mass tagging (tmt)
 P12
Targeted expression1
Decreased
 Polymerase chain reaction (pcr)
 E15.5, p0, p14
Protein expression level evidence1
Increased
 Western blot
 P12
Cardiovascular development and function1
 No change
 Histology
 P14
Digestive system development1
 No change
 Histology
 P14
Renal morphology1
 No change
 Histology
 P14
Respiratory system development1
 No change
 Histology
 P14
Size/growth1
 No change
 Gross necroscopy
 P0
Gene expression1
 No change
 Polymerase chain reaction (pcr)
 E15.5, p0, p14
Protein expression level evidence1
 No change
 Western blot
 P12
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

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