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Relevance to Autism

1p21.3 microdeletions affecting MIR137 have been identified in individuals with ASD (Carter et al., 2011), intellectual disability (Willemsen et al., 2011), and syndromic obesity (D'Angelo et al., 2015; Tucci et al., 2016). MIR137 resides within a locus on chromosome 1p21.3 that was found to be highly associated with schizophrenia in meta-analyses combining multiple genome-wide association studies (Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium 2011; Cross-Disorder Group of the Psychiatric Genomics Consortium 2013; Ripke et al., 2013; Schizophrenia Working Group of the Psychiatric Genomics Consortium 2014). A rare functional enhancer variant approximately 3.6 kb upstream of MIR137 (1:g.98515539A>T) was found to be associated with schizophrenia and bipolar disorder (Duan et al., 2014). Partial loss of Mir137 in heterozygous conditional-knockout mice was found to result in dysregulated synaptic plasticity, repetitive behavior, and impaired learning and social behavior; treatment with the Pde10a inhibitor papaverine or knockdown of Pde10a ameliorated these deficits (Cheng et al., 2018).

Molecular Function

microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Hemizygous deletions on chromosome 1p21.3 involving the DPYD gene in individuals with autism spectrum disorder.
ASD
Positive Association
Genome-wide association analysis identifies 13 new risk loci for schizophrenia.
SCZ
Positive Association
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
ASD, ADHD, BPD, MDD, SCZ
Positive Association
Genome-wide association study identifies five new schizophrenia loci.
SCZ
Positive Association
Biological insights from 108 schizophrenia-associated genetic loci.
SCZ
Support
MIR137 is the key gene mediator of the syndromic obesity phenotype of patients with 1p21.3 microdeletions.
Obesity
ASD, DD, ID
Support
Two New Cases of 1p21.3 Deletions and an Unbalanced Translocation t(8;12) among Individuals with Syndromic Obesity.
Obesity
DD, ID, autistic features
Support
A rare functional noncoding variant at the GWAS-implicated MIR137/MIR2682 locus might confer risk to schizophrenia and bipolar disorder.
SCZ, BPD
Support
Chromosome 1p21.3 microdeletions comprising DPYD and MIR137 are associated with intellectual disability.
ID
Autistic features
Recent recommendation
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1049R001 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1049R002 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN1049R003 
 copy_number_loss 
  
  
 Familial 
  
 Multiplex 
 GEN1049R004 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R005 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R006 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1049R007 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN1049R008 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1049R009 
 5KB_upstream_variant 
  
  
  
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1049C001 
 intron_variant 
 rs1625579 
  
  
 Discovery stage: 9,394 SCZ cases and 12,462 controls from 17 studies. Replication stage: 8,442 independent SCZ cases and 21,397 independent controls. 
 Discovery 
 GEN1049C002 
 intron_variant 
 rs2802535 
  
  
 Pyschiatrics Genomic Consortium (PGC): 33,332 cases (with ASD, ADHD, bipolar disorder, major depressive disorder, and schizophrenia) and 27,888 controls 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 16
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Deletion
 8
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Deletion
 4
 
1
Duplication
 1
 

Model Summary

Mice with homozygous germline KO of miR-137 or neural selective CKO show postnatal lethality with decrease in body and brain size, while heterozygotes show deficits in synaptic plasticity and learning, repetitive behavior, impaired social interaction, and elevated PDE10a. Treatment with Pde10a or KD of Pde10a rescues deficits in mir137 HT mice.

References

Type
Title
Author, Year
Primary
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.

M_MIR137_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mir137 gene was disrupted via homologous recombination in ES cells, where two loxP sites were inserted -2kb unstream and -0.6kb downstream of the Mir137 gene. Conditional ready mice were crossed with Zp3-Cre mic to delete Mir137 in the germline.
Allele Type: Knockout
Strain of Origin: Not reported
Genetic Background: 129S6/SvEvTac
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_MIR137_2_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mir137 gene was disrupted via homologous recombination in ES cells, where two loxP sites were inserted -2kb unstream and -0.6kb downstream of the Mir137 gene. Conditional ready mice were crossed with Zp3-Cre mic to delete Mir137 in the germline.
Allele Type: Knockout
Strain of Origin: Not reported
Genetic Background: 129S6/SvEvTac
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_MIR137_3_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of the microRNA Mir137 gene using Nestin-Cre, in neuronal, glial and other cell types in the central and peripheral nervous system
Allele Type: Conditional loss-of-function
Strain of Origin: Not reported
Genetic Background: 129S6/SvEvTac
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_MIR137_4_CKO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Conditional heterozygous deletion of the microRNA Mir137 gene using Nestin-Cre, in neuronal, glial and other cell types in the central and peripheral nervous system
Allele Type: Conditional loss-of-function
Strain of Origin: Not reported
Genetic Background: 129S6/SvEvTac
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_MIR137_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synapse density1
Increased
Description: Mutants show increase in psd95 and synaptophysin immunofluorescence intensity compared with controls in the hippocampus ca1, indicating synaptic overgrowth.
Exp Paradigm: NA
 Immunohistochemistry
 P18, 8 weeks
Brain size1
Decreased
Description: Mutants show decrease in brain weight compared with controls.
Exp Paradigm: NA
 Measurement of tissue weight
 P16
Size/growth1
Decreased
Description: Mutants show decrease in body weight compared with controls.
Exp Paradigm: NA
 Body weight measurement
 P16
Digestive system development1
Decreased
Description: Mutants show reduction in the size of the liver compared with controls.
Exp Paradigm: NA
 Gross necroscopy
 P14
Respiratory system development1
Decreased
Description: Mutants show reduction in the size of the kidney compared with controls.
Exp Paradigm: NA
 Gross necroscopy
 P14
Cardiovascular development and function1
Decreased
Description: Mutants show reduction in the size of the heart compared with controls.
Exp Paradigm: NA
 Gross necroscopy
 P14
Renal morphology1
Decreased
Description: Mutants show reduction in the size of the lung compared with controls.
Exp Paradigm: NA
 Gross necroscopy
 P14
Mortality/lethality1
Decreased
Description: Mutants show decrease in survival and postnatal lethality around p21 compared with controls.
Exp Paradigm: NA
 Kaplan-meier survival curve
 P0-3.4 months
Targeted expression1
Decreased
Description: Mutants show decrease in levels of mature mir-137 compared with controls, in the whole brain, hippocampus and cortex.
Exp Paradigm: NA
 Polymerase chain reaction (pcr)
 E15.5, p0, p14
Protein expression level evidence1
Increased
Description: Mutants show increase in protein levels of pde10a compared with controls.
Exp Paradigm: NA
 Western blot
 P12
Gene expression1
Abnormal
Description: Mutants show differentially expressed genes compared with controls. upregulated proteins were involved in dna replication, nervous system development, and chromatin remodeling. downregulated proteins were involved in peptidase activity regulation, acute-phase response, and regulation of neurotransmitter secretion. gria3, gabrb1 and psd-95 core complex genes are downregulated in mutant brains. fam3c, pde10a, epha7, foxp1, shroom2, are upregulated.
Exp Paradigm: NA
 Tandem mass tagging (tmt)
 P12
Cardiovascular development and function1
 No change
 Histology
 P14
Digestive system development1
 No change
 Histology
 P14
Renal morphology1
 No change
 Histology
 P14
Respiratory system development1
 No change
 Histology
 P14
Size/growth1
 No change
 Gross necroscopy
 P0
Gene expression1
 No change
 Polymerase chain reaction (pcr)
 E15.5, p0, p14
Protein expression level evidence1
 No change
 Western blot
 P12
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_MIR137_2_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synapse density1
Increased
Description: Mutants show increase in psd95 and synaptophysin immunofluorescence intensity compared with controls in the hippocampus ca1, indicating synaptic overgrowth.
Exp Paradigm: NA
 Immunohistochemistry
 P18, 8 weeks
Social memory1
Decreased
Description: Mutants show no change in time spent with a familiar social stimulus over a non-familiar social stimulus compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-3 months
Social memory1
Decreased
Description: Mutants show fewer entries into the novel-mouse zone and spent less time with the novel mouse compared to controls.
Exp Paradigm: NA
 Social recognition test
 2-3 months
Social approach1
Decreased
Description: Mutants show no change in time spent with a social stimulus or in an empty chamber compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-3 months
Mortality/lethality1
Increased
Description: Mutants show decrease in survival compared with controls.
Exp Paradigm: NA
 Kaplan-meier survival curve
 P0-3.4 months
Spatial reference memory1
Decreased
Description: Mutants show higher latency to targets and fewer target crossings in the probe trial compared with controls.
Exp Paradigm: NA
 Morris water maze test
 2-3 months
Spatial working memory1
Decreased
Description: Mutants show increase in latency to reach the platform compared with controls.
Exp Paradigm: NA
 Morris water maze test
 2-3 months
Spatial working memory1
Decreased
Description: Mutants failed to diminish the latency of the first entry to the hiding box compared with controls.
Exp Paradigm: NA
 Barnes maze test
 2-3 months
Spatial reference memory1
Decreased
Description: Mutants visited the target hole less often and spent less time in the target quadrant compared with controls.
Exp Paradigm: NA
 Barnes maze test
 2-3 months
Protein expression level evidence1
Increased
Description: Mutants show increase in protein levels of pde10a compared with controls.
Exp Paradigm: NA
 Western blot
 P12
Targeted expression1
Decreased
Description: Mutants show decrease in levels of mature mir-137 compared with controls, in the whole brain, hippocampus and cortex.
Exp Paradigm: NA
 Polymerase chain reaction (pcr)
 E15.5, p0, p14
Protein phosphorylation1
Decreased
Description: Mutants show reduced phosphorylation of camp-dependent protein kinase (pka) compared with controls.
Exp Paradigm: NA
 Western blot
 P12
Cardiovascular development and function1
 No change
 Histology
 P14
Cardiovascular development and function1
 No change
 Gross necroscopy
 P14
Digestive system development1
 No change
 Histology
 P14
Digestive system development1
 No change
 Gross necroscopy
 P14
Renal morphology1
 No change
 Histology
 P14
Renal morphology1
 No change
 Gross necroscopy
 P14
Respiratory system development1
 No change
 Histology
 P14
Respiratory system development1
 No change
 Gross necroscopy
 P14
Size/growth1
 No change
 Body weight measurement
 P16
Protein expression level evidence1
 No change
 Western blot
 P12
General locomotor activity: ambulatory activity1
 No change
 Barnes maze test
 2-3 months
Swimming ability1
 No change
 Morris water maze test
 2-3 months
Brain size1
 No change
 Measurement of tissue weight
 P16
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Maternal behavior, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory

M_MIR137_3_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synapse density1
Increased
Description: Mutants show increase in synaptic growth compared with controls in the hippocampus and cortex.
Exp Paradigm: NA
 Immunohistochemistry
 P18
Synapse density1
Increased
Description: Mutants show increase in psd95 and synaptophysin protein levels compared with controls in the hippocampus and cortex.
Exp Paradigm: NA
 Western blot
 P18
Mortality/lethality1
Increased
Description: Mutants show decrease in survival and postnatal lethality by p28 compared with controls.
Exp Paradigm: NA
 Kaplan-meier survival curve
 P0-3.4 months
Targeted expression1
Decreased
Description: Mutants show decrease in levels of mature mir-137 compared with controls, in the hippocampus.
Exp Paradigm: NA
 Quantitative pcr (qrt-pcr)
 E15.5, p0, p14
General characteristics1
 No change
 Gross necroscopy
 E15.5
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_MIR137_4_CKO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Self grooming: artificial stress evoked1
Increased
Description: Mutants show increase in self-grooming in the presence of a social stimulus compared with controls.
Exp Paradigm: NA
 Reciprocal social interaction test
 2-3 months
Synapse density1
Increased
Description: Mutants show increase in psd95 and synaptophysin protein levels compared with controls in the hippocampus and cortex.
Exp Paradigm: NA
 Western blot
 P18
Dendritic architecture: spine density1
Increased
Description: Mutants show increase in spine density in the hippocampus ca1 region compared with controls, indicating a deficiency in pruning.
Exp Paradigm: NA
 Golgi-cox staining
 2 weeks
Dendritic architecture: dendritic tree complexity1
Increased
Description: Mutants show increase in dendritic tree complexity in the hippocampus ca1 region compared with controls.
Exp Paradigm: NA
 Golgi-cox staining
 2 weeks
Synapse density1
Increased
Description: Mutants show increase in synaptic growth compared with controls in the hippocampus and cortex.
Exp Paradigm: NA
 Immunohistochemistry
 P18
Dendritic architecture: dendritic length1
Increased
Description: Mutants show increase in dendritic length in the hippocampus ca1 region compared with controls.
Exp Paradigm: NA
 Golgi-cox staining
 2 weeks
Synaptic plasticity: hippocampal ltp1
Decreased
Description: Mutants show attenuated hippocampal ltp compared with controls.
Exp Paradigm: NA
 Field potential recordings
 2-3 months
Presynaptic function: paired-pulse facilitation1
Decreased
Description: Mutants show significant reduction in ppf at the 50ms interval compared with controls but not at 20, 100, 200 or 400ms intervals.
Exp Paradigm: NA
 Paired-pulse ratio
 2-3 months
Synaptic transmission1
Decreased
Description: Mutants show decrease in e/i ratio compared with controls.
Exp Paradigm: Epscs and ipscs were pharmacologically isolated by using inhibitors specific to glutamate or gaba receptors. e/i ratios by sequentially recording evoked synaptic responses, first in the absence of any inhibitors to obtain total synaptic currents (that is, epsc + ipsc), second in the presence of nbqx or apv to obtain ipsc, and finally in the presence of nbqx, apv, or picrotoxin to verify the ipsc component.
 Whole-cell patch clamp
 2-3 months
Self grooming: perseveration1
Increased
Description: Mutants exhibit longer bouts of self-grooming compared with controls.
Exp Paradigm: NA
 Grooming behavior assessments
 2-3 months
Repetitive digging1
Increased
Description: Mutants bury more marbles compared with controls.
Exp Paradigm: NA
 Marble-burying test
 2-3 months
Social approach1
Decreased
Description: Mutants show no change in time spent with a social stimulus or in an empty chamber compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-3 months
Social memory1
Decreased
Description: Mutants show no change in time spent with a familiar social stimulus over a non-familiar social stimulus compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-3 months
Social memory1
Decreased
Description: Mutants show fewer entries into the novel-mouse zone and spent less time with the novel mouse compared to controls.
Exp Paradigm: NA
 Social recognition test
 2-3 months
Social interaction1
Decreased
Description: Mutants show decrease in total time spent in contact with the social stimulus mouse compared with controls.
Exp Paradigm: NA
 Reciprocal social interaction test
 2-3 months
Anxiety1
Increased
Description: Mutants show reduced entries into the central zone of the open field compared with controls.
Exp Paradigm: NA
 Open field test
 2-3 months
Spatial reference memory1
Decreased
Description: Mutants show higher latency to targets and fewer target crossings in the probe trial compared with controls.
Exp Paradigm: NA
 Morris water maze test
 2-3 months
Spatial working memory1
Decreased
Description: Mutants show increase in latency to reach the platform compared with controls.
Exp Paradigm: NA
 Morris water maze test
 2-3 months
Spatial working memory1
Decreased
Description: Mutants failed to diminish the latency of the first entry to the hiding box compared with controls.
Exp Paradigm: NA
 Barnes maze test
 2-3 months
Spatial reference memory1
Decreased
Description: Mutants visited the target hole less often and spent less time in the target quadrant compared with controls.
Exp Paradigm: NA
 Barnes maze test
 2-3 months
Protein expression level evidence1
Increased
Description: Mutants show increase in protein levels of pde10a compared with controls.
Exp Paradigm: NA
 Western blot
 P12
Targeted expression1
Decreased
Description: Mutants show decrease in levels of mature mir-137 compared with controls, in the hippocampus.
Exp Paradigm: NA
 Quantitative pcr (qrt-pcr)
 E15.5, p0, p14
Protein phosphorylation1
Decreased
Description: Mutants show reduced phosphorylation of camp-dependent protein kinase (pka) compared with controls.
Exp Paradigm: NA
 Western blot
 P12
General characteristics1
 No change
 Gross necroscopy
 E15.5
Mortality/lethality1
 No change
 Kaplan-meier survival curve
 P0-3.4 months
General locomotor activity: ambulatory activity1
 No change
 Barnes maze test
 2-3 months
Swimming ability1
 No change
 Morris water maze test
 2-3 months
Apoptosis: brain cells1
 No change
 Immunohistochemistry
 P0, p18, 2 months
 Not Reported: Circadian sleep/wake cycle, Communications, Immune response, Maternal behavior, Physiological parameters, Seizure, Sensory

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