Summary Statistics:
ASD Reports: 54
Recent Reports: 5
Annotated variants: 126
Associated CNVs: 5
Evidence score: 4
Gene Score: 2S
Relevance to Autism
Two de novo LoF variants in the MED13L gene (one splice-site, one nonsense) were identified in ASD probands from the Simons Simplex Collection (PMIDs 22542183, 25363768). A third de novo LoF variant in MED13L was identified in a patient from the Deciphering Developmental Disorders Study presenting with ASD and developmental delay (PMID 25533962). Variants in MED13L that result in haploinsufficiency are also associated with intellectual disability with or without congenital heart defects (PMIDs 23403903, 24781760, 25712080). Phenotypic characterization of 66 individuals with MED13L-related intellectual disability in Smol et al., 2018 determined that autistic features were present in 28% (16/58) of this cohort. Phenotypic evaluation of eight individuals with de novo MED13L variants in Trring et al., 2018 demonstrated that two individuals were diagnosed with autism, while a third individual presented with autistic features. Three de novo protein-truncating variants in MED13L were identified in ASD probands from the Autism Sequencing Consortium in Satterstrom et al., 2020; subsequent TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in this report identified MED13L as a candidate gene with a false discovery rate (FDR) 0.01. Additional de novo loss-of-function variants and potentially damaging missense variants in the MED13L gene were reported in ASD probands from the MSSNG cohort and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified MED13L as a gene reaching exome-wide significance (P < 2.5E-06).
Molecular Function
The protein encoded by this gene is a subunit of the Mediator complex, a large complex of proteins that functions as a transcriptional coactivator for most RNA polymerase II-transcribed genes. The encoded protein is involved in early development of the heart and brain. Defects in this gene are a cause of transposition of the great arteries, dextro-looped (DTGA) [MIM:608808].
References
Primary
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Novel de novo heterozygous loss-of-function variants in MED13L and further delineation of the MED13L haploinsufficiency syndrome.
DD, ID
Support
Genetic investigation of syndromic forms of obesity
DD, ID
Support
Diagnostic Yields of Trio-WES Accompanied by CNVseq for Rare Neurodevelopmental Disorders.
Speech delay
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Support
Report of a de novo c.2605C > T (p.Pro869Ser) change in the MED13L gene and review of the literature for MED13L-related intellectual disability
Mental retardation and distinctive facial features
DD, ID, autistic features
Support
Exome Pool-Seq in neurodevelopmental disorders.
ID
Hypotonia
Support
ID, epilepsy/seizures
Support
Large-scale discovery of novel genetic causes of developmental disorders.
ASD, DD, ID
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD/ID
Support
De novo mutations in moderate or severe intellectual disability.
ID
Speech delay, motor delay
Support
Aberrant cyclin C nuclear release induces mitochondrial fragmentation and dysfunction in MED13L syndrome fibroblasts
ID
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Using medical exome sequencing to identify the causes of neurodevelopmental disorders: experience of two clinical units and 216 patients.
ID
Support
Efficient strategy for the molecular diagnosis of intellectual disability using targeted high-throughput sequencing.
ID
Support
Genetic Analysis of Children With Unexplained Developmental Delay and/or Intellectual Disability by Whole-Exome Sequencing
DD, ID
Support
Diagnostic value of partial exome sequencing in developmental disorders.
DD
Epilepsy/seizures, autistic features
Support
De novo mutations in genes of mediator complex causing syndromic intellectual disability: mediatorpathy or transcriptomopathy?
ID
Autistic behavior
Support
Integrating de novo and inherited variants in 42
ASD
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
Genotype-phenotype evaluation of MED13L defects in the light of a novel truncating and a recurrent missense mutation.
DD, ID, epilepsy/seizures
Hypotonia, dysmorphic features
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID
Support
Clinical genome sequencing in an unbiased pediatric cohort.
Mental retardation and distinctive facial features
Congenital heart defects
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Increased diagnostic and new genes identification outcome using research reanalysis of singleton exome sequencing.
ID
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID
Support
Exome Sequencing in 200 Intellectual Disability/Autistic Patients: New Candidates and Atypical Presentations
ID
Support
Is MED13L-related intellectual disability a recognizable syndrome?
Mental retardation and distinctive facial features
ASD or autistic features
Support
Integrated analysis of whole-exome sequencing and transcriptome profiling in males with autism spectrum disorders.
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
Characterization of intellectual disability and autism comorbidity through gene panel sequencing.
ID, ASD or autistic traits
Support
MED13L haploinsufficiency syndrome: A de novo frameshift and recurrent intragenic deletions due to parental mosaicism.
Mental retardation and distinctive facial features
DD, ID
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Recent Recommendation
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Craniosynostosis
ASD
Recent Recommendation
MED13L-related intellectual disability: involvement of missense variants and delineation of the phenotype.
DD, ID
Autistic features
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Redefining the MED13L syndrome.
ID
Autistic features
GEN649R001
splice_site_variant
c.5364+1dup
De novo
Simplex
GEN649R002
stop_gained
c.4076G>A
p.Trp1359Ter
De novo
Simplex
GEN649R003
stop_gained
c.1690C>T
p.Arg564Ter
De novo
Simplex
GEN649R004
stop_gained
c.329G>A
p.Trp110Ter
De novo
Simplex
GEN649R005
frameshift_variant
c.4106del
p.Gly1369GlufsTer19
De novo
Simplex
GEN649R006
missense_variant
c.6005C>T
p.Ser2002Leu
De novo
Simplex
GEN649R007
frameshift_variant
CTGTGT>CT
De novo
Simplex
GEN649R008
missense_variant
c.5695G>A
p.Gly1899Arg
De novo
Simplex
GEN649R009
frameshift_variant
c.6118_6125del
p.Gly2040AsnfsTer32
De novo
Simplex
GEN649R010
frameshift_variant
c.3765del
p.Cys1256ValfsTer2
De novo
Simplex
GEN649R011
frameshift_variant
c.607dup
p.Ser203PhefsTer32
De novo
Simplex
GEN649R012
stop_gained
c.4420A>T
p.Lys1474Ter
De novo
Simplex
GEN649R013
copy_number_gain
De novo
GEN649R014
copy_number_loss
De novo
GEN649R015
copy_number_gain
De novo
GEN649R016
copy_number_gain
De novo
GEN649R017
copy_number_loss
De novo
GEN649R018
frameshift_variant
c.5949_5950del
p.Gln1984AlafsTer31
De novo
GEN649R019
copy_number_gain
Familial
Maternal
GEN649R020
copy_number_loss
De novo
GEN649R021
frameshift_variant
c.1708_1709del
p.Ser570PhefsTer27
De novo
Simplex
GEN649R022
missense_variant
c.3392G>A
p.Cys1131Tyr
De novo
GEN649R023
missense_variant
c.5695G>A
p.Gly1899Arg
De novo
GEN649R024
stop_gained
c.2524C>T
p.Arg842Ter
De novo
GEN649R025
intergenic_variant
G>CT
Unknown
GEN649R026
frameshift_variant
c.2395_2396del
p.Gln799GlyfsTer10
De novo
GEN649R027
missense_variant
c.6317C>T
p.Ala2106Val
Familial
Maternal
GEN649R028
missense_variant
c.6301G>T
p.Val2101Leu
Familial
Paternal
GEN649R029
stop_gained
c.2344G>T
p.Asp782Tyr
De novo
GEN649R030
frameshift_variant
c.257del
p.Phe86SerfsTer9
De novo
GEN649R031
copy_number_loss
Familial
Maternal
Multiplex
GEN649R032
frameshift_variant
c.1708_1709del
p.Ser570PhefsTer27
De novo
Simplex
GEN649R033
frameshift_variant
c.124dup
p.Asp42GlyfsTer13
De novo
GEN649R034
missense_variant
c.6485C>T
p.Thr2162Met
De novo
GEN649R035
frameshift_variant
c.2504del
p.Pro835LeufsTer46
De novo
Simplex
GEN649R036
missense_variant
c.2579A>G
p.Asp860Gly
De novo
Simplex
GEN649R037
splice_site_variant
c.5588_1G>A
p.?
De novo (germline mosaicism)
Multiplex
GEN649R038
missense_variant
c.1718C>T
p.Pro573Leu
De novo
Simplex
GEN649R039
stop_gained
c.5173C>T
p.Gln1725Ter
De novo
GEN649R040
frameshift_variant
c.2399dup
p.Thr801AsnfsTer9
De novo
GEN649R041
missense_variant
c.6280C>T
p.Pro2094Ser
De novo
Simplex
GEN649R042
copy_number_loss
De novo
GEN649R043
copy_number_loss
De novo
GEN649R044
copy_number_loss
De novo
GEN649R045
copy_number_loss
De novo
GEN649R046
stop_gained
c.173T>A
p.Leu58Ter
De novo
GEN649R047
stop_gained
c.5281C>T
p.Pro1761Ser
De novo
GEN649R048
frameshift_variant
c.1152dup
p.Ile385HisfsTer18
Unknown
GEN649R049
frameshift_variant
c.4456del
p.Gln1486SerfsTer25
De novo
GEN649R050
frameshift_variant
c.5156_5157del
p.Arg1719LysfsTer20
De novo
GEN649R051
splice_site_variant
c.5588+1G>A
De novo
Multiplex
GEN649R052
missense_variant
c.6488C>T
p.Ser2163Leu
De novo
GEN649R053
frameshift_variant
c.1708_1709del
p.Ser570PhefsTer27
De novo
GEN649R054
frameshift_variant
c.6289dup
p.Leu2097ProfsTer11
De novo
GEN649R055
frameshift_variant
c.830_845del
p.Arg277GlnfsTer5
De novo
GEN649R056
stop_gained
c.2065C>T
p.Gln689Ter
Unknown
GEN649R057
frameshift_variant
c.3945_3946del
p.Ile1315MetfsTer49
De novo
GEN649R058
missense_variant
c.2600C>T
p.Thr867Ile
De novo
GEN649R059
missense_variant
c.6488C>T
p.Ser2163Leu
Unknown
GEN649R060
missense_variant
c.2930C>T
p.Ala977Val
De novo
GEN649R061
missense_variant
c.6488C>T
p.Ser2163Leu
De novo
GEN649R062
copy_number_loss
De novo
GEN649R063
splice_site_variant
c.1009+1G>C
De novo
GEN649R064
frameshift_variant
c.2340_2343del
p.Thr781MetfsTer19
De novo
GEN649R065
frameshift_variant
c.3914_3915del
p.His1305LeufsTer59
Unknown
GEN649R066
missense_variant
c.2605C>T
p.Pro869Ser
De novo
GEN649R067
frameshift_variant
c.1903dup
p.Ser635LysfsTer8
De novo
GEN649R068
splice_site_variant
c.1009+1G>C
De novo
GEN649R069
splice_site_variant
c.2345-3C>G
De novo
GEN649R070
missense_variant
c.6530C>A
p.Ser2177Tyr
De novo
GEN649R071
missense_variant
c.6008C>T
p.Ser2003Leu
De novo
GEN649R072
splice_site_variant
c.6225+1G>A
De novo
GEN649R073
missense_variant
c.2605C>T
p.Pro869Ser
De novo
GEN649R074
stop_gained
c.5764C>T
p.Gln1922Ter
De novo
GEN649R075
copy_number_loss
De novo
GEN649R076
stop_gained
c.2071C>T
p.Gln691Ter
De novo
GEN649R077
frameshift_variant
c.5861_5890+1del
De novo
GEN649R078
copy_number_loss
De novo
GEN649R079
frameshift_variant
c.6277dup
p.Gln2093ProfsTer15
De novo
GEN649R080
stop_gained
c.5684G>A
p.Arg1895Lys
De novo
GEN649R081
missense_variant
c.3392G>A
p.Cys1131Tyr
De novo
GEN649R082
missense_variant
c.2594T>A
p.Phe865Tyr
De novo
GEN649R083
missense_variant
c.5852T>C
p.Val1951Ala
De novo
GEN649R084
frameshift_variant
c.3279delinsAA
p.Asn1093LysfsTer32
De novo
GEN649R085
frameshift_variant
c.3719dup
p.Asn1241GlufsTer9
De novo
Simplex
GEN649R086
missense_variant
c.6611A>G
p.Asn2204Ser
Unknown
Multiplex
GEN649R087
frameshift_variant
c.6260del
p.Pro2087GlnfsTer4
De novo
GEN649R088
missense_variant
c.2117G>A
p.Gly706Glu
De novo
GEN649R089
frameshift_variant
c.3942_3943del
p.Ile1315GlnfsTer49
De novo
GEN649R090
frameshift_variant
c.1708_1709del
p.Ser570PhefsTer27
De novo
Simplex
GEN649R091
missense_variant
c.5614C>T
p.Arg1872Cys
De novo
GEN649R092
missense_variant
c.2722A>G
p.Thr908Ala
De novo
GEN649R093
splice_site_variant
c.5364+1G>T
De novo
Simplex
GEN649R094
stop_gained
c.2928G>A
p.Trp976Ter
De novo
Simplex
GEN649R095
frameshift_variant
c.1416_1419del
p.Gln473LysfsTer11
De novo
Simplex
GEN649R096
missense_variant
c.2605C>T
p.Pro869Ser
De novo
Simplex
GEN649R097
missense_variant
c.2019A>T
p.Leu673Phe
De novo
Simplex
GEN649R098
splice_site_variant
c.72+1G>T
De novo
GEN649R099
inframe_indel
c.541_556delinsA
p.Val181_His186delinsAsn
De novo
Simplex
GEN649R100
frameshift_variant
c.2320del
p.Ile774PhefsTer27
De novo
Simplex
GEN649R101
frameshift_variant
c.1284_1285insTTTAAGCTTTT
p.Lys429PhefsTer7
De novo
GEN649R102
frameshift_variant
c.5054dup
p.Thr1686HisfsTer28
Unknown
Unknown
GEN649R103
missense_variant
c.6488C>T
p.Ser2163Leu
De novo
GEN649R104
frameshift_variant
c.2318del
p.Ser773LeufsTer28
De novo
Simplex
GEN649R105
missense_variant
c.5210A>G
p.Lys1737Arg
Unknown
GEN649R106
frameshift_variant
c.6331del
p.Gln2111SerfsTer18
De novo
Simplex
GEN649R107
synonymous_variant
c.3550T>C
p.Leu1184%3D
De novo
Simplex
GEN649R108
frameshift_variant
c.1654_1655insATAT
p.Ile552AsnfsTer47
De novo
Simplex
GEN649R109
missense_variant
c.5593C>T
p.Arg1865Trp
De novo
GEN649R110
missense_variant
c.4150A>G
p.Thr1384Ala
De novo
GEN649R111
synonymous_variant
c.4137G>A
p.Pro1379%3D
De novo
GEN649R112
frameshift_variant
c.3292_3296delinsA
p.Ala1098ThrfsTer15
De novo
GEN649R113
stop_gained
c.5920C>T
p.Arg1974Ter
De novo
GEN649R114
missense_variant
c.685G>C
p.Asp229His
De novo
GEN649R115
missense_variant
c.6583C>T
p.His2195Tyr
De novo
GEN649R116
copy_number_loss
Unknown
GEN649R117
splice_site_variant
c.4956-2A>T
De novo
Simplex
GEN649R118a
intron_variant
c.311-42655G>C
Familial
Both parents
GEN649R119a
intron_variant
c.311-42838A>T
Familial
Both parents
GEN649R120
copy_number_loss
De novo
Simplex
GEN649R121
stop_gained
c.2746G>T
p.Glu916Ter
De novo
Multiplex
GEN649R122
missense_variant
c.631G>T
p.Val211Leu
Unknown
Extended multiplex
GEN649R123
missense_variant
c.4273C>A
p.Pro1425Thr
Unknown
Simplex
GEN649R124
copy_number_gain
Unknown
Simplex
GEN649R125
frameshift_variant
c.572del
p.Leu191Ter
Unknown
GEN649R126
frameshift_variant
c.4670dup
p.Ala1558SerfsTer6
De novo
No Common Variants Available
12
Deletion-Duplication
10
No Animal Model Data Available
Summary Statistics:
Total Interactions: 21
Total Publications: 7
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
CCNC
cyclin C
892
P24863
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDK19
cyclin-dependent kinase 19
23097
Q9BWU1
LC-MS/MS
Varjosalo M , et al. 2013
CDK19
cyclin-dependent kinase 19
23097
Q9BWU1
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDK8
cyclin-dependent kinase 8
1024
P49336
LC-MS/MS
Varjosalo M , et al. 2013
CDK8
cyclin-dependent kinase 8
1024
P49336
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
ChIP-chip
Subtil-Rodrguez A , et al. 2013
FBXW7
F-box and WD repeat domain containing 7
55294
Q969H0
MS; IP/WB; Ubiquitination assay
Davis MA , et al. 2013
MED1
mediator complex subunit 1
5469
Q15648
MS; IP/WB; Ubiquitination assay
Davis MA , et al. 2013
MED1
mediator complex subunit 1
5469
Q15648
IP; LC-MS/MS
Huttlin EL , et al. 2015
MED10
mediator complex subunit 10
84246
Q9BTT4
TAP; MudPIT
Sato S , et al. 2004
MED18
mediator complex subunit 18
54797
Q9BUE0
IP; LC-MS/MS
Huttlin EL , et al. 2015
MED19
Mediator of RNA polymerase II transcription subunit 19
219541
A0JLT2
TAP; MudPIT
Sato S , et al. 2004
MED19
Mediator of RNA polymerase II transcription subunit 19
219541
A0JLT2
IP; LC-MS/MS
Huttlin EL , et al. 2015
MED21
mediator complex subunit 21
9412
Q13503
IP; LC-MS/MS
Huttlin EL , et al. 2015
MED26
mediator complex subunit 26
9441
O95402
TAP; MudPIT
Sato S , et al. 2004
MED28
mediator complex subunit 28
80306
Q9H204
TAP; MudPIT
Sato S , et al. 2004
MED29
mediator complex subunit 29
55588
B4DUA7
TAP; MudPIT
Sato S , et al. 2004
MED7
mediator complex subunit 7
9443
O43513
IP; LC-MS/MS
Huttlin EL , et al. 2015
MED9
mediator complex subunit 9
55090
Q9NWA0
TAP; MudPIT
Sato S , et al. 2004
UBC
ubiquitin C
7316
P63279
MS/MS
Kim W , et al. 2011
FMR1
fragile X mental retardation 1
14265
P35922
HITS-CLIP
Darnell JC , et al. 2011