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Relevance to Autism

Rare variants in the MED12 gene were initially identified in ASD probands in Beyer et al., 2002, and more recently X-linked variants in MED12 have been observed in male ASD probands from the Simons Simplex Collection (Wang et al., 2020). Mutations in MED12 are associated with several syndromic forms of intellectual disability, including Opitz-Kaveggia syndrome (Risheg et al., 2007), Lujan-Fryns syndrome (Schwartz et al., 2007), and X-linked Ohdo syndrome (Vulto-van Silfhout et al., 2013). A review of phenotypes associated with MED12-related syndromes reported that behavioral abnormalities, including autistic features, were frequently observed in individuals with Lujan-Fryns syndrome (Graham and Schwartz, 2013). Polla et al., 2020 characterized a cohort of 18 females presenting with neurodevelopmental disorders and harboring de novo variants in MED12; de novo protein-truncating MED12 variants were found to associate with a severe syndromic phenotype consisting of intellectual disability, facial dysmorphism, short stature, skeletal abnormalities, feeding difficulties, and other variable abnormalities, whereas de novo missense variants in MED12 were associated with a less specific but homogeneous phenotype including severe intellectual disability, autism spectrum disorder or autistic features, limited speech, and other variable anomalies. Autism spectrum disorder had previously been observed in two female patients with de novo MED12 missense variants from cohorts with intellectual disability (Fieremans et al., 2016; Halvardson et al., 2016). While no genetic association has been observed between a 12-bp duplication in the MED12 gene and autism in a German population cohort (Beyer et al., 2002) and in the SCAP cohort (Michaelis et al., 2000), genetic association between this duplication and schizophrenia has been observed in a northern European population cohort (Philibert 2006).

Molecular Function

The initiation of transcription is controlled in part by a large protein assembly known as the preinitiation complex. A component of this preinitiation complex is a 1.2 MDa protein aggregate called Mediator. This Mediator component binds with a CDK8 subcomplex which contains the protein encoded by this gene, mediator complex subunit 12 (MED12), along with MED13, CDK8 kinase, and cyclin C. The CDK8 subcomplex modulates Mediator-polymerase II interactions and thereby regulates transcription initiation and reinitation rates. The MED12 protein is essential for activating CDK8 kinase. Defects in this gene cause X-linked Opitz-Kaveggia syndrome, also known as FG syndrome, and Lujan-Fryns syndrome.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Association studies of the HOPA dodecamer duplication variant in different subtypes of autism.
ASD
Negative Association
The HOPA gene dodecamer duplication is not a significant etiological factor in autism.
ASD
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
DD/ID
Support
Mutations in MED12 cause X-linked Ohdo syndrome.
ID
ASD
Support
ASD
DD, ID, epilepsy/seizures
Support
Mutations in HECW2 are associated with intellectual disability and epilepsy.
ASD, ID, epilepsy/seizures
Support
Functional relationships between recessive inherited genes and genes with de novo variants in autism spectrum disorder
ASD
Support
A noncoding, regulatory mutation implicates HCFC1 in nonsyndromic intellectual disability.
ID
Support
DD, ID
Autistic features
Support
Identification of Intellectual Disability Genes in Female Patients with A Skewed X Inactivation Pattern.
ID
ASD
Support
Targeted Next-Generation Sequencing in Patients with Suggestive X-Linked Intellectual Disability.
ID
Support
Mediator links epigenetic silencing of neuronal gene expression with x-linked mental retardation.
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Support
Comprehensive molecular testing in patients with high functioning autism spectrum disorder.
ASD
Support
Diagnostic exome sequencing of syndromic epilepsy patients in clinical practice.
DD, epilepsy/seizures, microcephaly
Support
Integrating de novo and inherited variants in 42
ASD
Support
Nonsyndromic X-linked intellectual deficiency in three brothers with a novel MED12 missense mutation [c.5922G>T (p.Glu1974His)].
ID
Support
Exome Pool-Seq in neurodevelopmental disorders.
ID
Behavioral anomalies
Support
Diagnostic yield of patients with undiagnosed intellectual disability
DD, ID
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Dysmorphic features
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
DD, microcephaly
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
MED12 related disorders
Lujan-Fryns syndrome
Autistic features
Support
DD, ID
Support
De novo mutations in genes of mediator complex causing syndromic intellectual disability: mediatorpathy or transcriptomopathy?
ID
Highly Cited
The original Lujan syndrome family has a novel missense mutation (p.N1007S) in the MED12 gene.
ID, DD
ASD
Highly Cited
A recurrent mutation in MED12 leading to R961W causes Opitz-Kaveggia syndrome.
ID, DD
Highly Cited
The genomic structure and developmental expression patterns of the human OPA-containing gene (HOPA).
Recent Recommendation
Zebrafish Trap230/Med12 is required as a coactivator for Sox9-dependent neural crest, cartilage and ear development.
Recent Recommendation
A meta-analysis of the association of the HOPA12bp polymorphism and schizophrenia.
SCZ
Recent Recommendation
De novo variants in MED12 cause X-linked syndromic neurodevelopmental disorders in 18 females
ID
ASD or autistic features
Recent Recommendation
MED12 mutations link intellectual disability syndromes with dysregulated GLI3-dependent Sonic Hedgehog signaling.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN158R001 
 inframe_deletion 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN158R002 
 inframe_insertion 
  
  
  
  
  
 GEN158R003 
 missense_variant 
 c.3101T>G 
 p.Phe1034Cys 
 Unknown 
  
 Simplex 
 GEN158R004 
 missense_variant 
 c.2881C>T 
 p.Arg961Trp 
 Familial 
 Maternal 
 Multi-generational (4/6 families) 
 GEN158R005 
 missense_variant 
 c.3020A>G 
 p.Asn1007Ser 
 Familial 
 Maternal 
 Multi-generational 
 GEN158R006 
 missense_variant 
 c.3443G>A 
 p.Arg1148His 
 Familial 
 Maternal 
 Multi-generational 
 GEN158R007 
 missense_variant 
 c.3493T>C 
 p.Ser1165Pro 
 Familial 
 Maternal 
 Multiplex 
 GEN158R008 
 missense_variant 
 c.5185C>A 
 p.His1729Asn 
 De novo 
  
 Simplex 
 GEN158R009 
 stop_gained 
 c.5919C>A 
 p.Tyr1973Ter 
 De novo 
  
 Multi-generational 
 GEN158R010 
 inframe_deletion 
 c.736_741del 
 p.Asp246_Gly247del 
 Familial 
 Maternal 
 Simplex 
 GEN158R011 
 missense_variant 
 c.5922G>T 
 p.Gln1974His 
 Familial 
 Maternal 
 Multi-generational 
 GEN158R012 
 inframe_insertion 
  
 p.Gln2113delinsGlnGlnGlnHisGln 
 De novo 
  
  
 GEN158R013 
 missense_variant 
 c.1562G>A 
 p.Arg521His 
 De novo 
  
  
 GEN158R014 
 missense_variant 
 c.3646G>A 
 p.Val1216Met 
 De novo 
  
 Simplex 
 GEN158R015 
 missense_variant 
 c.887G>A 
 p.Arg296Gln 
 De novo 
  
  
 GEN158R016 
 missense_variant 
 c.2881C>T 
 p.Arg961Trp 
 Familial 
 Maternal 
  
 GEN158R017 
 missense_variant 
 c.2545T>C 
 p.Ser849Pro 
 De novo 
  
  
 GEN158R018 
 missense_variant 
 c.4342G>A 
 p.Gly1448Arg 
 Familial 
 Maternal 
  
 GEN158R019 
 missense_variant 
 c.5009C>T 
 p.Ser1670Phe 
 Familial 
 Maternal 
  
 GEN158R020 
 missense_variant 
 c.1619G>A 
 p.Arg540His 
 Familial 
 Maternal 
 Simplex 
 GEN158R021 
 missense_variant 
 c.4325A>G 
 p.His1442Arg 
 Familial 
 Maternal 
 Simplex 
 GEN158R022 
 splice_site_variant 
 c.1249-1G>C 
  
 De novo 
  
  
 GEN158R023 
 splice_site_variant 
 c.1249-2A>G 
  
 De novo 
  
  
 GEN158R024 
 stop_gained 
 c.5919C>A 
 p.Tyr1973Ter 
 De novo 
  
  
 GEN158R025 
 stop_gained 
 c.6231C>A 
 p.Tyr2077Ter 
 De novo 
  
  
 GEN158R026 
 stop_gained 
 c.6268C>T 
 p.Gln2090Ter 
 De novo 
  
  
 GEN158R027 
 stop_gained 
 c.6280C>T 
 p.Gln2094Ter 
 De novo 
  
  
 GEN158R028 
 stop_gained 
 c.6448C>T 
 p.Gln2150Ter 
 De novo 
  
  
 GEN158R029 
 missense_variant 
 c.514G>C 
 p.Glu172Gln 
 De novo 
  
  
 GEN158R030 
 missense_variant 
 c.2735C>T 
 p.Ser912Leu 
 De novo 
  
  
 GEN158R031 
 missense_variant 
 c.2786T>A 
 p.Val929Asp 
 De novo 
  
  
 GEN158R032 
 missense_variant 
 c.3412C>T 
 p.Arg1138Trp 
 De novo 
  
  
 GEN158R033 
 missense_variant 
 c.3412C>T 
 p.Arg1138Trp 
 De novo 
  
  
 GEN158R034 
 missense_variant 
 c.3646G>A 
 p.Val1216Met 
 De novo 
  
  
 GEN158R035 
 missense_variant 
 c.3653G>A 
 p.Gly1218Glu 
 De novo 
  
  
 GEN158R036 
 missense_variant 
 c.3932T>A 
 p.Val1311Glu 
 De novo 
  
  
 GEN158R037 
 missense_variant 
 c.4070G>A 
 p.Arg1357His 
 De novo 
  
  
 GEN158R038 
 missense_variant 
 c.4400G>A 
 p.Arg1467Gln 
 De novo 
  
  
 GEN158R039 
 missense_variant 
 c.1717T>C 
 p.Phe573Leu 
 Unknown 
  
 Unknown 
 GEN158R040 
 missense_variant 
 c.5260C>T 
 p.Pro1754Ser 
 Familial 
 Maternal 
  
 GEN158R041 
 missense_variant 
 c.3454A>G 
 p.Ile1152Val 
 Familial 
 Maternal 
  
 GEN158R042 
 missense_variant 
 c.2455C>T 
 p.Arg819Trp 
 De novo 
  
  
 GEN158R043 
 missense_variant 
 c.4082T>C 
 p.Leu1361Ser 
 De novo 
  
  
 GEN158R044 
 missense_variant 
 c.2351G>A 
 p.Arg784His 
 De novo 
  
  
 GEN158R045 
 missense_variant 
 c.3412C>T 
 p.Arg1138Trp 
 De novo 
  
  
 GEN158R046 
 missense_variant 
 c.823C>G 
 p.Leu275Val 
 Familial 
 Maternal 
 Extended multiplex 
 GEN158R047 
 missense_variant 
 c.2735C>T 
 p.Ser912Leu 
 De novo 
  
 Simplex 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN158C001 
 inframe_insertion 
  
 N/A 
 GlnGlnHisGln 
 Northern European 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion
 1
 
X
Duplication
 1
 
X
Deletion
 1
 
X
Deletion-Duplication
 21
 
X
Duplication
 2
 
X
Deletion
 2
 
X
Duplication
 1
 
X
Duplication
 2
 
X
Duplication
 1
 
X
Deletion-Duplication
 15
 
X
Duplication
 1
 

No Animal Model Data Available

 

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