Summary Statistics:
ASD Reports: 130
Recent Reports: 22
Annotated variants: 288
Associated CNVs: 11
Evidence score: 5
Gene Score: 2S
Relevance to Autism
Mutations in the MECP2 gene underlie Rett syndrome, an autism spectrum disorder. Some studies have found that rare variations in the MECP2 gene are associated with autism, while others have looked and found no variants in autistic patients. It appears that EGR2 and MECP2 can regulate each other's expression (Swanberg et al., 2009).
Molecular Function
The encoded protein has methylation-dependent transcriptional repressor activity . It is also involved in regulation of RNA splicing.
References
Primary
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2.
Rett syndrome
Positive Association
MECP2 structural and 3'-UTR variants in schizophrenia, autism and other psychiatric diseases: a possible association with autism.
ASD
SCZ
Negative Association
No mutations in the coding region of the Rett syndrome gene MECP2 in 59 autistic patients.
Rett syndrome
Support
Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders.
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Epilepsy/seizures
Rett syndrome
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
ASD, DD/ID
Support
De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability.
SCZ
Support
Comprehensive Analysis of Rare Variants of 101 Autism-Linked Genes in a Hungarian Cohort of Autism Spectrum Disorder Patients.
ASD
Rett syndrome
Support
MECP2 duplication syndrome
Support
Neurodevelopmental disorders in males related to the gene causing Rett syndrome in females (MECP2).
ID
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ASD, ID, epilepsy/seizures
Support
Astrocytic Gap Junctions Contribute to Aberrant Neuronal Synchronization in a Mouse Model of MeCP2 Duplication Syndrome
MECP2 duplication syndrome
Support
Epilepsy/seizures
DD
Support
Next-generation sequencing using a pre-designed gene panel for the molecular diagnosis of congenital disorders in pediatric patients.
DD, epilepsy/seizures
Developmental regression, hypotonia
Support
Phenotypic and genetic spectrum of epilepsy with myoclonic atonic seizures
ID, epilepsy/seizures
Support
A MECP2 missense mutation within the MBD domain in a Brazilian male with autistic disorder.
ASD
Support
Mosaic MECP2 variants in males with classical Rett syndrome features, including stereotypical hand movements.
Rett syndrome
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
ASD, DD, ID
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Rett syndrome
DD, ID, hypotonia
Support
De novo variants in neurodevelopmental disorders-experiences from a tertiary care center
DD, epilepsy/seizures
Support
ASD
ADHD, DD, ID, epilepsy/seizures
Support
Using whole-exome sequencing to identify inherited causes of autism.
ASD
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
DD, ID
Epilepsy/seizures, ASD, stereotypies
Support
In-frame deletion in MECP2 causes mild nonspecific mental retardation.
ID
Support
Mapping autosomal recessive intellectual disability: combined microarray and exome sequencing identifies 26 novel candidate genes in 192 consanguin...
ID
Support
Autism spectrum disorder and comorbid neurodevelopmental disorders (ASD-NDDs): Clinical and genetic profile of a pediatric cohort
ASD
DD, ID, epilepsy/seizures
Support
MECP2 missense mutations outside the canonical MBD and TRD domains in males with intellectual disability.
ID
ASD
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
A novel familial MECP2 mutation in a young boy: clinical and molecular findings.
ID
Epilepsy
Support
Diagnostic value of partial exome sequencing in developmental disorders.
DD
Support
Diagnostic yield of patients with undiagnosed intellectual disability
DD, ID
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Genome sequencing broadens the range of contributing variants with clinical implications in schizophrenia
SCZ
Support
Atypcial Rett syndrome, ASD, DD
Support
Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders.
ASD
Support
Neurological Diseases With Autism Spectrum Disorder: Role of ASD Risk Genes.
ASD
ID, epilepsy/seizures
Support
Aberrant brain functional and structural developments in MECP2 duplication rats
MECP2 duplication syndrome
Support
MECP2 is highly mutated in X-linked mental retardation.
ID
Support
Familial cases and male cases with MECP2 mutations.
Rett syndrome, X-linked intellectual disability
Support
Genetic Testing in Patients with Neurodevelopmental Disorders: Experience of 511 Patients at Cincinnati Children's Hospital Medical Center
ASD, DD
Epilepsy/seizures
Support
ID, epilepsy/seizures
Support
Mutations in epilepsy and intellectual disability genes in patients with features of Rett syndrome.
Rett syndrome
Epilepsy
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Submicroscopic duplication in Xq28 causes increased expression of the MECP2 gene in a boy with severe mental retardation and features of Rett syndr...
ID
RTT
Support
Diagnostic exome sequencing of syndromic epilepsy patients in clinical practice.
DD, epilepsy/seizures
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.
DD
Behavioral abnormalities (self-injurious, aggressi
Support
Graded and pan-neural disease phenotypes of Rett Syndrome linked with dosage of functional MeCP2
Support
The expanding role of MBD genes in autism: identification of a MECP2 duplication and novel alterations in MBD5, MBD6, and SETDB1.
ASD
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
DD, ID
ASD, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
MECP2 mutation in male patients with non-specific X-linked mental retardation.
ID
Support
A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology.
DD
Support
Detecting cryptic clinically relevant structural variation in exome-sequencing data increases diagnostic yield for developmental disorders
DD, ID, epilepsy/seizures
Support
ASD
Somatosensory behaviors
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Stereotypic behavior
Support
Characterization of intellectual disability and autism comorbidity through gene panel sequencing.
ID, ASD or autistic traits
Support
Chromosome 2 deletion encompassing the MAP2 gene in a patient with autism and Rett-like features.
ASD
Support
Clinical and molecular genetic characterization of familial MECP2 duplication syndrome in a Chinese family.
MECP2 duplication syndrome
ASD, ID, epilepsy/seizures
Support
Deep phenotyping and whole-exome sequencing improved the diagnostic yield for nuclear pedigrees with neurodevelopmental disorders
ADHD, DD, ID
Support
Identification of Intellectual Disability Genes in Female Patients with A Skewed X Inactivation Pattern.
ID
Support
Next Generation Sequencing of 134 Children with Autism Spectrum Disorder and Regression
ASD
Developmental regression, epilepsy/seizures
Support
ASD, ID, epilepsy/seizures
Support
Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study.
ID
Epilepsy, ASD
Support
Elucidation of the phenotypic spectrum and genetic landscape in primary and secondary microcephaly.
Microcephaly
DD, ID
Support
Comprehensive genome sequencing analyses identify novel gene mutations and copy number variations associated with infant developmental delay or intellectual disability (DD/ID)
DD, ID
Stereotypy
Support
A mutation in the rett syndrome gene, MECP2, causes X-linked mental retardation and progressive spasticity in males.
ID
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Rett syndrome
Support
Report of a novel missense mutation in the MECP2 gene in a middle-aged man with intellectual disability syndrome
DD, ID, epilepsy/seizures
Support
Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders.
ID, epilepsy
ADHD
Support
Diagnostic Yields of Trio-WES Accompanied by CNVseq for Rare Neurodevelopmental Disorders.
DD, ID
Support
Identification of MeCP2 mutations in a series of females with autistic disorder.
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean
DD
Support
The MECP2 variant c.925C>T (p.Arg309Trp) causes intellectual disability in both males and females without classic features of Rett syndrome.
ID
Epilepsy/seizures
Support
Targeted re-sequencing for early diagnosis of genetic causes of childhood epilepsy: the Italian experience from the 'beyond epilepsy' project
DD, epilepsy/seizures
Autistic behavior
Support
ASD
DD, ID, epilepsy/seizures
Support
A partial MECP2 duplication in a mildly affected adult male: a putative role for the 3' untranslated region in the MECP2 duplication phenotype.
ASD
ADHD, epilepsy
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
DD, ID
Autistic behavior, stereotypy
Support
Preserved speech variant is allelic of classic Rett syndrome.
Rett syndrome
Support
Asperger syndrome and early-onset schizophrenia associated with a novel MECP2 deleterious missense variant.
ASD
SCZ
Support
Genome sequencing of 320 Chinese children with epilepsy: a clinical and molecular study
ASD, DD, epilepsy/seizures
Support
Efficient strategy for the molecular diagnosis of intellectual disability using targeted high-throughput sequencing.
ID
Support
The Clinical and Genetic Features of Co-occurring Epilepsy and Autism Spectrum Disorder in Chinese Children.
ASD, epilepsy/seizures
Support
Study of MECP2 gene in Rett syndrome variants and autistic girls.
Rett syndrome
ASD
Support
Identification of autism-related MECP2 mutations by whole-exome sequencing and functional validation.
ASD
Support
Identification of Region-Specific Cytoskeletal and Molecular Alterations in Astrocytes of Mecp2 Deficient Animals
Rett syndrome
Support
DD
ASD, epilepsy/seizures
Support
Comprehensive molecular testing in patients with high functioning autism spectrum disorder.
ASD
Support
Next-Generation Sequencing in Korean Children With Autism Spectrum Disorder and Comorbid Epilepsy
ASD
Epilepsy/seizures, Rett syndrome
Support
DD, epilepsy/seizures
Highly Cited
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex.
Highly Cited
MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin.
Recent Recommendation
MECP2 genomic structure and function: insights from ENCODE.
Recent Recommendation
Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function.
Recent Recommendation
Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR.
Recent Recommendation
Deletion of Mecp2 in Sim1-expressing neurons reveals a critical role for MeCP2 in feeding behavior, aggression, and the response to stress.
Recent Recommendation
Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders
Rett syndrome
Recent Recommendation
L1 retrotransposition in neurons is modulated by MeCP2.
Recent Recommendation
Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor.
Recent Recommendation
Genetic modifiers of MeCP2 function in Drosophila.
Recent Recommendation
Further delineation of the MECP2 duplication syndrome phenotype in 59 French male patients, with a particular focus on morphological and neurologic...
MECP2 duplication syndrome
Stereotypic movements
Recent Recommendation
Dysfunction in GABA signalling mediates autism-like stereotypies and Rett syndrome phenotypes.
Recent Recommendation
An AT-hook domain in MeCP2 determines the clinical course of Rett syndrome and related disorders.
Recent Recommendation
A MECP2 mutation in a highly conserved aminoacid causing mental retardation in a male.
ID
Recent Recommendation
GluD1 is a common altered player in neuronal differentiation from both MECP2-mutated and CDKL5-mutated iPS cells.
Recent Recommendation
Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.
Recent Recommendation
Bisphenol A delays the perinatal chloride shift in cortical neurons by epigenetic effects on the Kcc2 promoter.
Recent Recommendation
Increased binding of MeCP2 to the GAD1 and RELN promoters may be mediated by an enrichment of 5-hmC in autism spectrum disorder (ASD) cerebellum.
Recent Recommendation
MeCP2 deficiency disrupts axonal guidance, fasciculation, and targeting by altering Semaphorin 3F function.
Recent Recommendation
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
Recent Recommendation
Oligodendrocyte lineage cells contribute unique features to Rett syndrome neuropathology.
Recent Recommendation
Reciprocal co-regulation of EGR2 and MECP2 is disrupted in Rett syndrome and autism.
ASD, RTT
Recent Recommendation
Overexpression of methyl-CpG binding protein 2 impairs T(H)1 responses.
Recent Recommendation
Transcriptional regulation of the MET receptor tyrosine kinase gene by MeCP2 and sex-specific expression in autism and Rett syndrome.
GEN157R001
missense_variant
c.397C>A
p.Arg133Cys
De novo
Simplex
GEN157R002
missense_variant
c.464T>C
p.Phe155Ser
De novo
Simplex
GEN157R003
missense_variant
c.473C>T
p.Thr158Met
De novo
Simplex
GEN157R004
stop_gained
c.837C>T
De novo
Simplex
GEN157R005
frameshift_variant
c.694insT
Stop after 27 out of frame AA's
Unknown
Not maternal
Simplex
GEN157R006
missense_variant
c.316C>T
p.Arg106Trp
Unknown
Not maternal
Multiplex
GEN157R007
synonymous_variant
c.656C>T
p.(=)
Familial
Paternal
Multiplex
GEN157R008
synonymous_variant
c.1307C>T
p.(=)
Unknown
Not maternal
Simplex
GEN157R009
missense_variant
c.1214C>T
p.Pro405Leu
De novo
GEN157R010
missense_variant
c.587C>G
p.Thr196Ser
GEN157R011
missense_variant
c.1127C>G
p.Pro376Arg
GEN157R012
frameshift_variant
c.1558insA
GEN157R013
missense_variant
c.1127C>G
p.Pro376Arg
GEN157R014
3_prime_UTR_variant
c.6809T>C
Familial
Maternal
GEN157R015
3_prime_UTR_variant
c.1638G>C
Familial
Maternal
GEN157R016
frameshift_variant
c.1193_1233del
p.Leu398HisfsTer5
De novo
GEN157R017
stop_gained
c.880C>T
p.Arg294Ter
De novo
GEN157R018
stop_gained
c.1216G>A
p.Glu406Lys
Familial
Maternal
Multi-generational
GEN157R019
missense_variant
c.419C>T
p.Ala140Val
Familial
Maternal
Multi-generational
GEN157R020
stop_gained
c.502C>T
p.Arg168Ter
GEN157R021
stop_gained
c.763C>T
p.Arg255Ter
GEN157R022
missense_variant
c.608C>T
p.Pro203Leu
Unknown
Unknown
GEN157R023
synonymous_variant
c.656C>T
p.(=)
GEN157R024
synonymous_variant
c.1145C>T
p.(=)
GEN157R025
intron_variant
IVS2-61C>G
GEN157R026
missense_variant
c.410A>G
p.Glu137Gly
GEN157R027
missense_variant
c.499C>T
p.Arg167Trp
Familial
Maternal
Multiplex
GEN157R028
missense_variant
c.1196C>T
p.Pro399Leu
GEN157R029
missense_variant
c.1358G>A
p.Arg453Gln
GEN157R030
missense_variant
c.850A>G
p.Lys284Glu
GEN157R031
intron_variant
CT>GT
GEN157R032
synonymous_variant
c.849C>G
p.(=)
GEN157R033
synonymous_variant
c.897C>T
p.Ala299=
GEN157R034
synonymous_variant
c.1035A>G
p.(=)
GEN157R035
synonymous_variant
c.1160C>T
p.Ser387Phe
GEN157R036
inframe_deletion
c.1161_1400del
p.Pro388_Glu467del
Familial
Maternal
GEN157R037
copy_number_gain
Familial
Maternal
Simplex
GEN157R038
missense_variant
c.674C>T
p.Pro225Leu
De novo
GEN157R039
missense_variant
c.964C>T
p.Pro322Ser
Familial
Maternal
GEN157R040
missense_variant
c.479C>G
p.Thr160Arg
GEN157R041
synonymous_variant
c.582C>T
p.(=)
GEN157R042
missense_variant
c.1189G>A
p.Glu397Lys
GEN157R043
synonymous_variant
c.1233C>T
p.Pro411=
GEN157R044
missense_variant
c.641C>G
p.Ala214Gly
Familial
Maternal
Simplex
GEN157R045
synonymous_variant
c.819G>T
p.(=)
Familial
Paternal
GEN157R046
copy_number_gain
Familial
Paternal
Multiplex
GEN157R047
missense_variant
c.719C>G
p.Thr240Ser
Familial
Maternal
Multiplex
GEN157R048
missense_variant
c.719C>G
p.Thr240Ser
Familial
Maternal
Simplex
GEN157R049
missense_variant
c.1108G>A
p.Ala370Thr
Familial
Maternal
Simplex
GEN157R050
intron_variant
c.63-44T>C
Unknown
Unknown
Unknown
GEN157R051
synonymous_variant
c.312A>G
p.Gly104=
Unknown
Unknown
Unknown
GEN157R052
intron_variant
c.413+94C>T
Unknown
Unknown
Unknown
GEN157R053
intron_variant
c.413+102A>G
Unknown
Unknown
Unknown
GEN157R054
synonymous_variant
c.786C>T
p.Arg262=
Unknown
Unknown
Unknown
GEN157R055
synonymous_variant
c.870C>T
p.Ala290=
Unknown
Unknown
Unknown
GEN157R056
synonymous_variant
c.978C>T
p.Ile326=
Unknown
Unknown
Unknown
GEN157R057
synonymous_variant
c.1071A>G
p.Lys357=
Unknown
Unknown
Unknown
GEN157R058
synonymous_variant
c.1371G>A
p.Thr457=
Unknown
Unknown
Unknown
GEN157R059
synonymous_variant
c.65T>C
p.(=)
Unknown
Unknown
Unknown
GEN157R060
frameshift_variant
c.1200_1222del
p.Pro401ArgfsTer8
De novo
Simplex
GEN157R061
missense_variant
c.596C>G
p.Pro199Arg
Familial
Maternal
Multiplex
GEN157R062
stop_gained
c.1447G>T
p.Glu483Ter
Familial
Maternal
Multiplex
GEN157R063
missense_variant
c.604C>T
p.Arg202Cys
De novo
Simplex
GEN157R064
missense_variant
c.398G>T
p.Arg133Leu
De novo
Simplex
GEN157R065
stop_gained
c.423C>G
p.Tyr141Ter
De novo
Simplex
GEN157R066
frameshift_variant
c.432del
p.Arg145AlafsTer6
De novo
Simplex
GEN157R067
stop_gained
c.502C>T
p.Arg168Ter
De novo
Simplex
GEN157R068
missense_variant
c.674C>G
p.Pro225Arg
De novo
Simplex
GEN157R069
stop_gained
c.763C>T
p.Arg255Ter
De novo
Simplex
GEN157R070
stop_gained
c.808C>T
p.Arg270Ter
De novo
Simplex
GEN157R071
frameshift_variant
c.806del
p.Ala269ValfsTer32
De novo
Simplex
GEN157R072
stop_gained
c.880C>T
p.Arg294Ter
De novo
Simplex
GEN157R073
frameshift_variant
c.1157del
p.Glu386GlyfsTer35
De novo
Simplex
GEN157R074
frameshift_variant
c.1158_1198del
p.Glu386AspfsTer5
De novo
Simplex
GEN157R075
frameshift_variant
c.1159del
p.Ser387ProfsTer34
De novo
Simplex
GEN157R076
frameshift_variant
c.1165_1233del69ins21
p.Pro389_Pro411del23ins7
De novo
Simplex
GEN157R077
stop_gained
c.1357C>T
p.Arg453Ter
De novo
Simplex
GEN157R078
missense_variant
c.397C>T
p.Arg133Cys
De novo
Simplex
GEN157R079
stop_gained
c.763C>T(c.799C>T)
p.Arg255Ter (p.Arg267Ter)
De novo
Simplex
GEN157R080
missense_variant
c.473C>T(c.509C>T)
p.Thr158Met (p.Thr170Met)
De novo
Simplex
GEN157R081
missense_variant
c.397C>T(c.433C>T)
p.Arg133Cys (p.Arg145Cys)
De novo
Simplex
GEN157R082
missense_variant
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R083
stop_gained
c.502C>T
p.Arg168Ter
De novo
Simplex
GEN157R084a
complex_structural_alteration
c.954A>T
p.Glu318Asp
Familial
Maternal
Multi-generational
GEN157R084b
complex_structural_alteration
NM_004992.3:c.1097_1235delins50bp
p.Arg354_Val412delins41
Familial
Maternal
Multi-generational
GEN157R085
stop_gained
c.1483G>T
p.Glu495Ter
Familial
Maternal
Multiplex
GEN157R086
stop_gained
c.763C>T
p.Arg255Ter
Unknown
Unknown
GEN157R087
missense_variant
c.1366G>A
p.Ala456Thr
Unknown
GEN157R088
frameshift_variant
c.771_814del
p.Met258ProfsTer70
De novo
GEN157R089
missense_variant
c.316C>T
p.Arg106Trp
De novo
GEN157R090
frameshift_variant
c.21del
p.Ala8ArgfsTer36
De novo
GEN157R091
missense_variant
c.554G>T
p.Gly185Val
Familial
Maternal
Multiplex
GEN157R092
missense_variant
c.499C>T
p.Arg167Trp
Familial
Maternal
Multiplex
GEN157R093
missense_variant
c.925C>T
p.Arg309Trp
De novo
GEN157R094
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R095
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R096
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R097
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R098
missense_variant
c.925C>T
p.Gln309Ter
Familial
Maternal
GEN157R099
missense_variant
c.419C>T
p.Ala140Val
Familial
Maternal
Multiplex
GEN157R100
stop_gained
c.880C>T
p.Arg294Ter
Unknown
GEN157R101
frameshift_variant
GGGGGGCTGGTGGGGTCCTCGGAGCTCTCGGGCTCAGGTGGAGGT>G
p.Pro398fsTer
Familial
Maternal
GEN157R102
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R103
stop_gained
c.799C>T
p.Arg267Ter
De novo
GEN157R104
stop_gained
c.538C>T
p.Arg180Ter
Unknown
Not maternal
GEN157R105
stop_gained
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R106
stop_gained
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R107
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN157R108
copy_number_loss
De novo
GEN157R109
missense_variant
c.397C>T
p.Arg133Cys
De novo
GEN157R110
missense_variant
c.915G>T
p.Lys305Asn
De novo
GEN157R111
missense_variant
c.491G>T
p.Ser164Ile
De novo (germline mosaicism)
Multiplex (dizygotic twins)
GEN157R112
frameshift_variant
c.1164_1207del
p.Pro389Ter
De novo
Multiplex
GEN157R113
frameshift_variant
c.722dup
p.Pro242AlafsTer6
De novo
Multiplex
GEN157R114
stop_gained
c.1447G>T;c.1483G>T
p.Glu483Ter;p.Glu495Ter
Familial
Maternal
Multiplex
GEN157R115
stop_gained
c.800G>A
p.Arg267Gln
Unknown
Simplex
GEN157R116
frameshift_variant
c.1167_1200del
p.Pro390AlafsTer8
Unknown
Simplex
GEN157R117
copy_number_gain
Familial
Maternal
GEN157R118
stop_gained
c.502C>T
p.Arg168Ter
De novo
GEN157R119
missense_variant
c.569G>A
p.Arg190His
Familial
Multi-generational
GEN157R120
missense_variant
c.397C>T
p.Arg133Cys
Familial
Maternal
Multiplex
GEN157R121
missense_variant
c.916C>T
p.Arg306Ter
Familial
Maternal
Multi-generational
GEN157R122
missense_variant
c.397C>T
p.Arg133Cys
Familial
Maternal
Multi-generational
GEN157R123a
stop_gained
c.1164_1207del
p.Lys389Ter
Familial
Maternal
Simplex
GEN157R123b
stop_gained
c.1227_1229del
p.Glu409del
Familial
Maternal
Simplex
GEN157R124
missense_variant
c.1409G>A
p.Arg470His
Familial
Maternal
Simplex
GEN157R125
missense_variant
c.441C>G
p.Asp147Glu
Familial
Maternal
Multiplex
GEN157R126
intron_variant
c.21C>G
p.Ala7=
De novo
GEN157R127
stop_gained
c.502C>T
p.Arg168Ter
De novo
GEN157R128
frameshift_variant
c.1157_1197del
p.Glu386AlafsTer5
De novo
GEN157R129
missense_variant
c.455C>T
p.Ala152Val
De novo
Simplex
GEN157R130
missense_variant
c.1162C>T
p.Pro388Ser
Familial
Maternal
Simplex
GEN157R131
stop_gained
c.880C>T
p.Arg294Ter
De novo
Simplex
GEN157R132
stop_gained
c.844C>T
p.Arg282Ter
De novo
Simplex
GEN157R133
copy_number_gain
Familial
Maternal
Multi-generational
GEN157R134
copy_number_gain
De novo
GEN157R135
missense_variant
c.397C>T
p.Arg133Cys
De novo
GEN157R136
frameshift_variant
c.1309dup
p.Glu437GlyfsTer11
De novo
GEN157R137
stop_gained
c.808C>T
p.Arg270Ter
De novo
GEN157R138
stop_gained
c.538C>T
p.Arg180Ter
De novo
Simplex
GEN157R139
stop_gained
c.799C>T
p.Arg267Ter
De novo
Simplex
GEN157R140
frameshift_variant
c.746del
p.Gly249ValfsTer11
Familial
Maternal
Simplex
GEN157R141
stop_gained
c.538C>T
p.Arg180Ter
Unknown
Not maternal
Simplex
GEN157R142
missense_variant
c.1108G>A
p.Ala370Thr
De novo
Simplex
GEN157R143
missense_variant
c.307C>T
p.Arg103Trp
De novo
Simplex
GEN157R144
frameshift_variant
c.1138_1144del
p.His380ThrfsTer39
Familial
Maternal
Multiplex
GEN157R145
frameshift_variant
c.806del
p.Ala269ValfsTer32
De novo
GEN157R146
missense_variant
c.473C>T
p.Thr158Met
De novo
Multi-generational
GEN157R147
missense_variant
c.473C>T
p.Thr158Met
De novo
GEN157R148
copy_number_loss
De novo
GEN157R149
missense_variant
c.398G>A
p.Arg133His
De novo
GEN157R150
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R151
stop_gained
c.844C>T
p.Arg282Ter
De novo
GEN157R152
frameshift_variant
c.1416_1417del
p.Ile473CysfsTer25
De novo
GEN157R153
missense_variant
c.509C>T
p.Thr170Met
De novo
GEN157R154
missense_variant
c.473C>T
p.Thr158Met
De novo
GEN157R155
missense_variant
c.1208C>G
p.Pro403Arg
Familial
Maternal
GEN157R156
missense_variant
c.1216G>A
p.Glu406Lys
Familial
Maternal
GEN157R157
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN157R158
stop_gained
c.763C>T
p.Arg255Ter
De novo
GEN157R159
frameshift_variant
c.47_57del
p.Gly16GlufsTer22
Unknown
GEN157R160
missense_variant
c.397C>T
p.Arg133Cys
De novo
GEN157R161
missense_variant
c.916C>T
p.Arg306Ter
De novo
GEN157R162
missense_variant
c.509C>T
p.Thr170Met
De novo
GEN157R163
copy_number_gain
Familial
Maternal
GEN157R164
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R165
stop_gained
c.686C>A
p.Pro229His
De novo
GEN157R166
stop_gained
c.502C>T
p.Arg168Ter
Unknown
GEN157R167
stop_gained
c.880C>T
p.Arg294Ter
De novo
GEN157R168
missense_variant
c.352C>T
p.Arg118Trp
Unknown
Unknown
GEN157R169
missense_variant
c.433C>T
p.Arg145Cys
De novo
Unknown
GEN157R170
missense_variant
c.1104C>G
p.Ser368Arg
Unknown
Unknown
GEN157R171
stop_gained
c.538C>T
p.Arg180Ter
Unknown
Unknown
GEN157R172
missense_variant
c.433C>T
p.Arg145Cys
De novo
Unknown
GEN157R173
stop_gained
c.916C>T
p.Arg306Ter
Unknown
Unknown
GEN157R174
missense_variant
c.952C>T
p.Arg318Cys
Unknown
Unknown
GEN157R175
frameshift_variant
c.1193_1199del
p.Leu398HisfsTer21
Familial
Maternal
GEN157R176
missense_variant
c.845A>G
p.Glu282Gly
De novo
Simplex
GEN157R177
missense_variant
c.673C>A
p.Pro225Thr
De novo
GEN157R178
missense_variant
c.602C>T
p.Ala201Val
Unknown
GEN157R179
missense_variant
c.403A>G
p.Lys135Glu
Unknown
GEN157R180
missense_variant
c.455C>G
p.Pro152Arg
Unknown
GEN157R181
frameshift_variant
c.1157_1185del
p.Glu386AlafsTer9
Unknown
Unknown
GEN157R182
missense_variant
c.397C>T
p.Arg133Cys
Unknown
Unknown
GEN157R183
stop_gained
c.502C>T
p.Arg168Ter
Unknown
Unknown
GEN157R184
missense_variant
c.439A>G
p.Lys147Glu
Unknown
Unknown
GEN157R185
frameshift_variant
c.1158_1164del
p.Ser387ArgfsTer32
Unknown
Unknown
GEN157R186
copy_number_gain
Familial
Maternal
Unknown
GEN157R187
stop_gained
c.820C>T
p.Gln274Ter
Unknown
Unknown
GEN157R188
stop_gained
c.1363G>T
p.Ala455Ser
Unknown
GEN157R189
copy_number_loss
De novo
GEN157R190
deletion
De novo
GEN157R191
delins
De novo
GEN157R192
deletion
De novo
GEN157R193
deletion
De novo
GEN157R194
frameshift_variant
c.1200_1243del
p.Pro401Ter
De novo
GEN157R195
stop_gained
c.1198_1239delinsTGAGGACTTGAG
p.Pro400_Ser413delinsTer
De novo
GEN157R196
translocation
De novo
GEN157R197
copy_number_gain
Unknown
GEN157R198
missense_variant
c.467A>G
p.Lys156Arg
Unknown
GEN157R199
missense_variant
c.473C>T
p.Thr158Met
Unknown
GEN157R200
missense_variant
c.824T>C
p.Val275Ala
Unknown
GEN157R201
5_prime_UTR_variant
c.-187_-186del
Unknown
GEN157R202
missense_variant
c.674C>G
p.Pro225Arg
Unknown
GEN157R203
missense_variant
c.509C>T
p.Thr170Met
De novo
GEN157R204
stop_gained
c.502C>T
p.Arg168Ter
De novo
GEN157R205
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R206
missense_variant
c.509C>T
p.Thr170Met
De novo
GEN157R207
missense_variant
c.473C>T
p.Thr158Met
De novo
GEN157R208
missense_variant
c.473C>T
p.Thr158Met
De novo
GEN157R209
frameshift_variant
c.59_60del
p.Arg20ThrfsTer21
De novo
GEN157R210
stop_gained
c.844C>T
p.Arg282Ter
De novo
GEN157R211
missense_variant
c.1208C>G
p.Pro403Arg
Familial
Maternal
GEN157R212
frameshift_variant
c.1416_1417del
p.Ile473CysfsTer25
De novo
GEN157R213
missense_variant
c.500G>C
p.Arg167Pro
Unknown
Multiplex
GEN157R214
frameshift_variant
c.91del
p.Gln31ArgfsTer13
Unknown
GEN157R215
stop_gained
c.763C>T
p.Arg255Ter
De novo
Simplex
GEN157R216
missense_variant
c.455C>T
p.Ala152Val
Familial
Maternal
GEN157R217
frameshift_variant
c.1164_1198del
p.Lys389ThrfsTer4
De novo
GEN157R218
stop_gained
c.916C>T
p.Arg306Ter
Unknown
GEN157R219
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R220
frameshift_variant
c.1158_1201del
p.Glu386AspfsTer4
Unknown
GEN157R221
missense_variant
c.961C>T
p.Arg321Trp
De novo
GEN157R222
frameshift_variant
c.791del
p.Gly264AlafsTer37
De novo
GEN157R223
stop_gained
c.799C>T
p.Arg267Ter
Unknown
GEN157R224
missense_variant
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R225
missense_variant
c.434G>A
p.Arg145His
De novo
Simplex
GEN157R226
missense_variant
c.352C>T
p.Arg118Trp
De novo
Simplex
GEN157R227
missense_variant
c.710C>G
p.Pro237Arg
De novo
GEN157R228
missense_variant
c.686C>T
p.Pro229Leu
De novo
GEN157R229
stop_gained
c.427G>T
p.Ala143Ser
De novo
GEN157R230
missense_variant
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R231
missense_variant
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R232
stop_gained
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R233
stop_gained
c.799C>T
p.Arg267Ter
De novo
Simplex
GEN157R234
missense_variant
c.710C>G
p.Pro237Arg
De novo
Simplex
GEN157R235
missense_variant
c.710C>G
p.Pro237Arg
De novo
Simplex
GEN157R236
missense_variant
c.433C>T
p.Arg145Cys
De novo
Simplex
GEN157R237
frameshift_variant
c.1164_1207del
p.Lys389Ter
De novo
GEN157R238
frameshift_variant
c.1136_1152del
p.His379LeufsTer20
De novo
GEN157R239
missense_variant
c.925C>T
p.Gln309Ter
De novo
GEN157R240
missense_variant
c.916C>T
p.Arg306Ter
De novo
GEN157R241
missense_variant
c.851C>T
p.Pro284Leu
De novo
GEN157R242
missense_variant
c.508A>G
p.Thr170Ala
De novo
GEN157R243
missense_variant
c.437C>G
p.Ser146Cys
De novo
GEN157R244
missense_variant
c.352C>T
p.Arg118Trp
De novo
GEN157R245
missense_variant
c.215G>A
p.Gly72Asp
De novo
GEN157R246
stop_gained
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R247
missense_variant
c.710C>G
p.Pro237Arg
De novo
GEN157R248
missense_variant
c.941C>G
p.Pro314Arg
De novo
Simplex
GEN157R249
missense_variant
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R250
frameshift_variant
c.1164_1207del
p.Lys389Ter
De novo
GEN157R251
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R252
missense_variant
c.509C>T
p.Thr170Met
De novo
GEN157R253
missense_variant
c.917G>A
p.Arg306Gln
De novo
GEN157R254
stop_gained
c.916C>T
p.Arg306Ter
De novo
GEN157R255
missense_variant
c.710C>G
p.Pro237Arg
De novo
Simplex
GEN157R256
missense_variant
c.952C>T
p.Arg318Cys
De novo
Simplex
GEN157R257
stop_gained
c.844C>T
p.Arg282Ter
De novo
Simplex
GEN157R258
missense_variant
c.952C>T
p.Arg318Cys
De novo
Simplex
GEN157R259
frameshift_variant
c.1122del
p.Lys375ArgfsTer46
Familial
Maternal
Multiplex
GEN157R260
frameshift_variant
c.23_27del
p.Ala8GlufsTer32
De novo
Simplex
GEN157R261
frameshift_variant
c.842dup
p.Arg282ProfsTer61
De novo
Simplex
GEN157R262
missense_variant
c.491C>G
p.Pro164Arg
De novo
Simplex
GEN157R263
missense_variant
c.433C>T
p.Arg145Cys
De novo
Simplex
GEN157R264
stop_gained
c.538C>T
p.Arg180Ter
De novo
Simplex
GEN157R265
missense_variant
c.952C>T
p.Arg318Cys
De novo
Simplex
GEN157R266
missense_variant
c.910C>T
p.Leu313Phe
Unknown
GEN157R267
stop_gained
c.916C>T
p.Arg306Ter
De novo
Simplex
GEN157R268
missense_variant
c.455C>T
p.Ala152Val
Unknown
Simplex
GEN157R269
frameshift_variant
c.148_152del
p.Glu50ArgfsTer5
Unknown
Simplex
GEN157R270
missense_variant
c.1376C>T
p.Ala459Val
Unknown
Simplex
GEN157R271
missense_variant
c.1030C>T
p.Arg344Trp
Unknown
Not maternal
GEN157R272
stop_gained
c.844C>T
p.Arg282Ter
De novo
Simplex
GEN157R273
missense_variant
c.509C>T
p.Thr170Met
Unknown
Simplex
GEN157R274
frameshift_variant
c.1197_1222delinsAGC
p.Pro400AlafsTer9
Unknown
GEN157R275
frameshift_variant
c.1233dup
p.Thr412HisfsTer5
Unknown
GEN157R276
missense_variant
c.433C>T
p.Arg145Cys
Unknown
GEN157R277
missense_variant
c.724C>A
p.Pro242Thr
Familial
Maternal
GEN157R278
missense_variant
c.433C>T
p.Arg145Cys
De novo
GEN157R279
missense_variant
c.433C>T
p.Arg145Cys
De novo
GEN157R280
frameshift_variant
c.792_795del
p.Arg265SerfsTer35
De novo
GEN157R281
copy_number_loss
Unknown
GEN157R282
frameshift_variant
c.842del
p.Gly281AlafsTer20
De novo
GEN157R283
frameshift_variant
c.1200_1243del
p.Pro401Ter
Unknown
GEN157R284
missense_variant
c.916C>T
p.Arg306Ter
Unknown
GEN157R285
missense_variant
c.952C>T
p.Arg318Cys
Unknown
GEN157R286
splice_region_variant
c.378-3C>G
p.?
Unknown
No Common Variants Available
X
Deletion-Duplication
21
X
Deletion-Duplication
78
Summary Statistics:
# of Reports: 2
# of Models: 13
External Links
Model Summary
Knockdown of mecp2 in zebrafish results in decreased axonal and dendritic architecture, which is likely driven by decreased expression of axonal guidance genes sema3f, sema5b, and robo2. Mecp2 morphants show increased apoptosis. They also exhibit reduced response to tactile stimuli even though the muscle fiber morphology is not changed. Mecp2 null mutants likewise show a decrease in dendritic architecture and decreased expression of sema3f, sema5b, and robo2. These effects in morpholino-induced morphants could be rescued by injection of mecp2 mRNA and ameliorated by injection of sema3f, sema5b, or robo2 mRNA. Loss of mecp2 also results in initial growth retardation and deficits in gastrointestinal function. These are accompanied by decreased in innate immune response measured in the number of neutrophils, but no change in the number of microglia or macrophages is observed. Likewise, mecp2 loss results in profound loss of tnfa function, a proinflammatory cytokine. Transient changes in il1b and il10 are observed as well, suggestive of increased inflammatory signaling, which are followed by resolution of inflammation. Injection of mecp2 mRNA temporarily increases mecp2 expression, but this effect is only temporary. Injection of tnfa mRNA does not rescue the immune response or the initial reduced growth deficits in mecp2-null mutants. Moreover, mecp2-null mutants show abnormal gene expression profile, measured by RNA sequencing.
References
Primary
Methyl-CpG Binding Protein 2 (Mecp2) Regulates Sensory Function Through Sema5b and Robo2.
Additional
Mecp2 regulates tnfa during zebrafish embryonic development and acute inflammation.
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Splice-blocking morpholino (5-CTCACCTCTGCTGACAACAAAATAA-3) was selected for knocking down Mecp2. Freshly fertilized zebrafish eggs were injected with mecp2 morpholino (800 microM) at the one- to two-cell stage in a volume of approximately 1 nl.
Allele Type: Knockdown
Strain of Origin: AB
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Mecp2 null mutants carried q63/q63 nonsense mutation generated through N-ethyl-N-nitrosourea (ENU)-mutagenesis. Mutant line contains a premature stop codon in the mecp2 gene that truncates the protein before the methyl binding domain (MBD) and transcriptional repression domain (TRD).
Allele Type: Knockout
Strain of Origin: AB
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Model Type:
Genetic
Model Genotype:
Homozygous
Mutation:
Mecp2-null mutants (carrying q63/q63 nonsense mutation generated through N-ethyl-N-nitrosourea (ENU)-mutagenesis) co-injected with mecp2 morpholino. Freshly fertilized zebrafish eggs were injected with mecp2 morpholino (800 microM) at the one- to two-cell stage in a volume of approximately 1 nl.
Allele Type: Knockout
Strain of Origin: AB
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Mutant line contains a premature stop codon in the mecp2 gene (mecp2^Q63*) that truncates the protein before the methyl binding domain (MBD) and transcriptional repression domain (TRD).
Allele Type: Knockout
Strain of Origin: AB
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Zebrafish embryos at one-cell stage were injected with anti-sense morpholino oligonucleotide designed to block initiation of zebrafish mecp2 protein translation (Gao et al., 2015).
Allele Type: Knockdown
Strain of Origin: AB
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Axon architecture: axon length1
Sustained effect
View More
Description: Co-injection of mecp2 mRNA rescues the reduction in the total projection length of trigeminal ganglion neurons in mecp2 MO morphants.
Immunofluorescence staining
24 hpf
Dendritic architecture: dendritic length1
Decreased
View More
Description: Mecp2 MO morphants showed significantly less peripheral projections from trigeminal ganglion neurons compared to WT controls.
Immunofluorescence staining
24 hpf
Axon architecture: axon length1
Decreased
View More
Description: Mecp2 MO morphants showed a significant reduction in total length of peripheral axon projections compared to controls.
Immunofluorescence staining
24 hpf
Decreased
View More
Description: Mecp2 MO morphants showed a reduction in responseness to tactile stimulation compared to controls.
General observations
48 hpf
Increased
View More
Description: Mecp2 MO morphants showed a significant increase in the level of apoptosis compared to controls.
Tunel assay
16, 24 hpf
Decreased
View More
Description: Mecp2 MO morphants showed a reduction in expression of sema3f gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Decreased
View More
Description: Mecp2 MO morphants showed a reduction in expression of robo2 gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Abnormal
View More
Description: Mecp2 MO morphants showed misregulation in expression of 1123 genes with a minimum of 2-fold change compared to controls, of which 1005 (607 downregulated and 398 upregulated) had a mammalian ortholog and 118 (43 downregulated and 75 upregulated) didn't.
Gene expression microarray
24 hpf
Decreased
View More
Description: Mecp2 MO morphants showed a reduction in expression of sema5b gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Muscular fiber morphology1
No change
Immunohistochemistry
Not reported
Not Reported:
Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Social behavior
Dendritic architecture: dendritic length1
Decreased
View More
Description: Mecp2-null mutants showed a significant reduction in the mean dendrite length of trigeminal ganglion neurons compared to WT controls.
Immunofluorescence staining
24 hpf
Digestive system function: gastrointestinal motility2
Decreased
View More
Description: mecp2-null mutants showed green/yellow discoloration in the GI tracts indicative of an accumulation of, or disruption in, flow of bile compared to controls. At 7 dpf, dark yellow droplets were regularly observed in the GI tracts of mecp2-null mutants, consistent with bile overproduction.
General observations
4-7 dpf
Decreased
View More
Description: mecp2-null mutants showed growth retardation compared to controls.
General observations
2 dpf
Increased
View More
Description: mecp2-null mutants showed an increase in neutrophil number compared to controls.
Fluorescence microscopy
4-5 dpf
Increased
View More
Description: mecp2-null mutants showed an increase in neutrophil number in the GI tract compared to controls.
Fluorescence microscopy
2-5 dpf
Abnormal
View More
Description: mecp2-null mutants showed abnormal gene expression compared to controls. Specifically, 3837 transcripts were significantly upregulated and 4217 transcripts were significantly downregulated compared to controls.
Rna sequencing
6 hpf
Decreased
View More
Description: mecp2-null mutants showed a decrease in tnfa expression compared to controls.
Confocal microscopy
3 dpf
Increased
View More
Description: mecp2-null mutants showed an increase in il1b expression compared to controls.
Quantitative pcr (qrt-pcr)
5-6 dpf
Decreased
View More
Description: Mecp2-null mutants showed a reduction in expression of sema5b gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Decreased
View More
Description: mecp2-null mutants showed a decrease in tnfa expression as part of innate immune response compared to controls.
Quantitative pcr (qrt-pcr)
3 dpf
Increased
View More
Description: mecp2-null mutants showed an increase in il10 expression compared to controls.
Quantitative pcr (qrt-pcr)
5-6 dpf
Decreased
View More
Description: Mecp2-null mutants showed a reduction in expression of sema3f gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Increased
View More
Description: mecp2-null mutants showed an increase in crp expression compared to controls.
Quantitative pcr (qrt-pcr)
4-5 dpf
Decreased
View More
Description: Mecp2-null mutants showed a reduction in expression of robo2 gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
Decreased
View More
Description: Starting at 6 hpf, when tnfa expression is detectable in wild-type controls, mecp2-null mutants showed a decrease in tnfa expression compared to controls.
Quantitative pcr (qrt-pcr)
6 hpf - 7 dpf
No change
General observations
7 dpf
No change
Fluorescence microscopy
3 dpf
No change
Fluorescence microscopy
5 dpf
No change
Phagocytosis assay
3 dpf
No change
Fluorescence microscopy
3-5 dpf
No change
Quantitative pcr (qrt-pcr)
3 dpf
No change
Quantitative pcr (qrt-pcr)
0-3 dpf
No change
Quantitative pcr (qrt-pcr)
1-7 dpf
No change
Quantitative pcr (qrt-pcr)
1-4, 7 dpf
No change
Quantitative pcr (qrt-pcr)
3 dpf
No change
Quantitative pcr (qrt-pcr)
1-4, 7 dpf
No change
Quantitative pcr (qrt-pcr)
1-7 dpf
No change
Quantitative pcr (qrt-pcr)
1-7 dpf
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Decreased
View More
Description: Mecp2-null mutants injected with mecp2 MO showed a decrease in expression of sema5b gene compared to controls.
Quantitative pcr (qrt-pcr)
24 hpf
No change
Quantitative pcr (qrt-pcr)
24 hpf
No change
Quantitative pcr (qrt-pcr)
24 hpf
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
No change
Fluorescence microscopy
3 dpf
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Increased
View More
Description: mecp2 morphants showed an increase in neutrophil number in the GI tract compared to controls.
Fluorescence microscopy
2 dpf
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Summary Statistics:
Total Interactions: 522
Total Publications: 117
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
7-Sep
septin 7
989
A8K3D0
ChIP
Ballestar E , et al. 2004
ABCB1
ATP-binding cassette, sub-family B (MDR/TAP), member 1
5243
A4D1D2
ChIP
El-Osta A and Wolffe AP 2001
ABCG2
ATP-binding cassette, sub-family G (WHITE), member 2
9429
Q9UNQ0
ChIP
To KK , et al. 2006
ACTL6A
actin-like 6A
86
O96019
IP; LC-MS/MS
Tsujimura K , et al. 2015
ADAM12
ADAM metallopeptidase domain 12
8038
O43184
Supershift assay; ChIP
Ray BK , et al. 2012
ADORA2A
adenosine A2a receptor
135
P29274
ChIP
Buira SP , et al. 2009
ANKRD2
ankyrin repeat domain 2 (stretch responsive muscle)
26287
Q9GZV1
Protein microarray; GST; DNA affinity precipitation
Belgrano A , et al. 2011
APOE
apolipoprotein E
348
P02649
ChIP
Ballestar E , et al. 2003
Arx
aristaless related homeobox
170302
Q96QS3
ChIP
Dhawan S , et al. 2011
BAZ1A
bromodomain adjacent to zinc finger domain, 1A
11177
Q9NRL2
IP; LC-MS/MS
Huttlin EL , et al. 2015
BBX
bobby sox homolog (Drosophila)
56987
A8K6U2
IP; LC-MS/MS
Huttlin EL , et al. 2015
BIRC2
baculoviral IAP repeat containing 2
329
Q13490
ChIP
Ballestar E , et al. 2004
BLM
Bloom syndrome, RecQ helicase-like
641
P54132
IP; LC-MS/MS
Huttlin EL , et al. 2015
BRD4
bromodomain containing 4
23476
O60885
ChIP-chip
Yasui DH , et al. 2007
BRIX1
BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
55299
Q8TDN6
IP; LC-MS/MS
Huttlin EL , et al. 2015
BRSK2
BR serine/threonine kinase 2
9024
Q8IWQ3
ChIP-chip
Yasui DH , et al. 2007
C10ORF2
chromosome 10 open reading frame 2
56652
Q96RR1
IP; LC-MS/MS
Huttlin EL , et al. 2015
C11ORF57
chromosome 11 open reading frame 57
55216
Q6ZUT1
IP; LC-MS/MS
Huttlin EL , et al. 2015
C18ORF21
UPF0711 protein C18orf21
83608
Q32NC0
IP; LC-MS/MS
Huttlin EL , et al. 2015
C3ORF17
chromosome 3 open reading frame 17
25871
Q6NW34
IP; LC-MS/MS
Huttlin EL , et al. 2015
C9ORF114
chromosome 9 open reading frame 114
51490
Q5T280
IP; LC-MS/MS
Huttlin EL , et al. 2015
CBX3
chromobox homolog 3
11335
Q13185
ChIP
Agarwal N , et al. 2007
CCNA2
cyclin A2
890
P20248
ChIP
Jamaluddin MD , et al. 2007
CD70
CD70 molecule
970
P32970
ChIP
Zhou Y , et al. 2011
Cdk10
cyclin-dependent kinase 10
234854
Q0VH02
RNA immunoprecipitation (RIP)
Long SW , et al. 2010
CDK5
cyclin-dependent kinase 5
1020
Q00535
in vivo kinase assay
Liang Z , et al. 2015
CDK5R1
cyclin-dependent kinase 5, regulatory subunit 1 (p35)
8851
Q15078
in vivo kinase assay
Liang Z , et al. 2015
CDKL5
cyclin-dependent kinase-like 5
6792
O76039
GST; IP/WB
Mari F , et al. 2005
CDKN2A
cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)
1029
P42771
ChIP
Lin RK , et al. 2006
CEBPA
CCAAT/enhancer binding protein (C/EBP), alpha
1050
P49715
ChIP
Tada Y , et al. 2006
CEBPZ
CCAAT/enhancer binding protein (C/EBP), zeta
10153
Q03701
IP; LC-MS/MS
Huttlin EL , et al. 2015
CENPV
centromere protein V
201161
Q7Z7K6
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHMP1A
charged multivesicular body protein 1A
5119
A6NG32
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHRFAM7A
CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion
89832
Q494W8
ChIP-chip
Yasui DH , et al. 2011
CHRNA7
cholinergic receptor, nicotinic, alpha 7 (neuronal)
1139
P36544
ChIP-chip
Yasui DH , et al. 2011
CHUK
conserved helix-loop-helix ubiquitous kinase
1147
O15111
IP/WB; in vitro kinase assay
Khoshnan A and Patterson PH 2012
CLU
clusterin
1191
P10909
ChIP
Gibson JH , et al. 2010
CRMP1
collapsin response mediator protein 1
1400
B3KT07
ChIP
Gibson JH , et al. 2010
CROCC
ciliary rootlet coiled-coil, rootletin
9696
Q5TZA2
ChIP
Artuso R , et al. 2011
CSE1L
CSE1 chromosome segregation 1-like (yeast)
1434
P55060
ChIP
Ballestar E , et al. 2004
CTCF
CCCTC-binding factor (zinc finger protein)
10664
B5MC38
ChIP
Nagarajan RP , et al. 2009
DDX21
DEAD (Asp-Glu-Ala-Asp) box helicase 21
9188
Q9NR30
IP; LC-MS/MS
Huttlin EL , et al. 2015
DDX23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
9416
Q9BUQ8
IP; LC-MS/MS
Tsujimura K , et al. 2015
DDX24
DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
57062
Q9GZR7
IP; LC-MS/MS
Huttlin EL , et al. 2015
DDX25
DEAD (Asp-Glu-Ala-Asp) box helicase 25
29118
Q9UHL0
IP; LC-MS/MS
Tsujimura K , et al. 2015
DDX27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
55661
Q96GQ7
IP; LC-MS/MS
Tsujimura K , et al. 2015
DDX31
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
64794
Q9H8H2
IP; LC-MS/MS
Huttlin EL , et al. 2015
DDX3X
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked
1654
O00571
IP; LC-MS/MS
Tsujimura K , et al. 2015
DDX50
DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
79009
Q9BQ39
IP; LC-MS/MS
Tsujimura K , et al. 2015
DDX51
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
317781
Q8N8A6
IP; LC-MS/MS
Huttlin EL , et al. 2015
DDX54
DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
79039
Q8TDD1
IP; LC-MS/MS
Huttlin EL , et al. 2015
DDX56
DEAD (Asp-Glu-Ala-Asp) box helicase 56
54606
Q9NY93
IP; LC-MS/MS
Huttlin EL , et al. 2015
DGCR8
DiGeorge syndrome critical region gene 8
54487
Q8WYQ5
IP; LC-MS/MS
Huttlin EL , et al. 2015
DHX16
DEAH (Asp-Glu-Ala-His) box polypeptide 16
8449
O60231
IP; LC-MS/MS
Tsujimura K , et al. 2015
DHX30
DEAH (Asp-Glu-Ala-His) box polypeptide 30
22907
Q7L2E3
IP; LC-MS/MS
Tsujimura K , et al. 2015
DHX36
DEAH (Asp-Glu-Ala-His) box polypeptide 36
170506
Q9H2U1
IP; LC-MS/MS
Tsujimura K , et al. 2015
DHX37
DEAH (Asp-Glu-Ala-His) box polypeptide 37
57647
Q8IY37
IP; LC-MS/MS
Tsujimura K , et al. 2015
DHX9
DEAH (Asp-Glu-Ala-His) box polypeptide 9
1660
Q08211
IP; LC-MS/MS
Tsujimura K , et al. 2015
DLX5
distal-less homeobox 5
1749
P56178
ChIP; WB; qRT-PCR; Southern blot; ChIP-loop assay
Horike S , et al. 2004
DLX6
distal-less homeobox 6
1750
J3KR92
ChIP; WB; qRT-PCR; Southern blot; ChIP-loop assay
Horike S , et al. 2004
DNM1
dynamin 1
1759
Q05193
ChIP
Gibson JH , et al. 2010
E2F1
E2F transcription factor 1
1869
Q01094
Luciferase reporter assay
Matsumura S , et al. 2009
EGR2
early growth response 2
1959
P11161
ChIP
Swanberg SE , et al. 2008
EIF2AK2
eukaryotic translation initiation factor 2-alpha kinase 2
5610
P19525
IP; LC-MS/MS
Huttlin EL , et al. 2015
EP300
E1A binding protein p300
2033
Q9Y6B2
IP/WB; in vitro acetylation assay
Zocchi L and Sassone-Corsi P 2012
ESF1
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
51575
Q9H501
IP; LC-MS/MS
Huttlin EL , et al. 2015
ESR1
estrogen receptor 1
2099
P03372
ChIP
Rasti M , et al. 2011
FCF1
FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
51077
Q4FZ45
IP; LC-MS/MS
Huttlin EL , et al. 2015
FHIT
fragile histidine triad gene
2272
P49789
ChIP
Lin RK , et al. 2006
FHL1
four and a half LIM domains 1
2273
Q13642
ChIP
Ballestar E , et al. 2004
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP; RNA immunoprecipitation (RIP)
Ascano M Jr , et al. 2012
FOXG1
forkhead box G1
2290
P55316
IP/WB
Dastidar SG , et al. 2012
Frg1
FSHD region gene 1
14300
P97376
RNA immunoprecipitation (RIP)
Long SW , et al. 2010
FUS
fused in sarcoma
2521
P35637
in vivo splicing assay; Co-localization
Coady TH and Manley JL 2015
FXR2
Fragile X retardation 2
9513
P51116
IP; LC-MS/MS
Huttlin EL , et al. 2015
GABRB3
gamma-aminobutyric acid (GABA) A receptor, beta 3
2562
P28472
ChIP
Hogart A , et al. 2007
GAD1
glutamate decarboxylase 1 (brain, 67kDa)
2571
Q8IVA8
ChIP; Methylated DNA immunoprecipitation (MeDIP)
Zhubi A , et al. 2014
GAD2
Glutamate decarboxylase 2
2572
Q05329
ChIP; Methylated DNA immunoprecipitation (MeDIP)
Zhubi A , et al. 2014
GNB1
guanine nucleotide binding protein (G protein), beta polypeptide 1
2782
P62873
ChIP
Gibson JH , et al. 2010
GNL2
guanine nucleotide binding protein-like 2 (nucleolar)
29889
Q13823
IP; LC-MS/MS
Huttlin EL , et al. 2015
GSTP1
glutathione S-transferase pi 1
2950
P09211
ChIP
Stirzaker C , et al. 2004
GTF2B
general transcription factor IIB
2959
Q00403
GST
Kaludov NK and Wolffe AP 2000
GTF2F2
general transcription factor IIF, polypeptide 2, 30kDa
2963
P13984
ChIP-chip
Yasui DH , et al. 2007
GTPBP10
GTP-binding protein 10 (putative)
85865
A4D1E9
IP; LC-MS/MS
Huttlin EL , et al. 2015
GTPBP4
GTP binding protein 4
23560
D2CFK9
IP; LC-MS/MS
Huttlin EL , et al. 2015
H19
H19 fetal liver mRNA
14955
N/A
Luciferase reporter assay
Drewell RA , et al. 2002
HDAC1
histone deacetylase 1
3065
Q13547
IP/WB; GST
Nan X , et al. 1998
HDAC2
histone deacetylase 2
3066
Q92769
GST
Nan X , et al. 1998
HIPK2
homeodomain interacting protein kinase 2
28996
Q9H2X6
Y2H; IP/WB; in vitro kinase assay
Bracaglia G , et al. 2009
HIRA
HIR histone cell cycle regulation defective homolog A (S. cerevisiae)
7290
P54198
IP; LC-MS/MS
Huttlin EL , et al. 2015
HIST1H1T
Histone H1t
3010
P22492
IP; LC-MS/MS
Huttlin EL , et al. 2015
HIST2H2BF
histone cluster 2, H2bf
440689
Q5QNW6
IP; LC-MS/MS
Huttlin EL , et al. 2015
HMGN1
high mobility group nucleosome binding domain 1
3150
P05114
ChIP
Abuhatzira L , et al. 2011
HNRNPA1
heterogeneous nuclear ribonucleoprotein A1
3178
P09651
ChIP-chip
Yasui DH , et al. 2007
HNRNPA1
heterogeneous nuclear ribonucleoprotein A1
3178
P09651
IP; LC-MS/MS
Tsujimura K , et al. 2015
HNRNPA2B1
heterogeneous nuclear ribonucleoprotein A2/B1
3181
P22626
ChIP-chip
Yasui DH , et al. 2007
HNRNPA3
heterogeneous nuclear ribonucleoprotein A3
220988
P51991
IP; LC-MS/MS
Tsujimura K , et al. 2015
HNRNPC
heterogeneous nuclear ribonucleoprotein C (C1/C2)
3183
P07910
IP; LC-MS/MS
Tsujimura K , et al. 2015
HNRNPF
eterogeneous nuclear ribonucleoprotein F
3185
P52597
UV-cross-linking assay; EMSA
Newnham CM , et al. 2010
HNRNPH1
heterogeneous nuclear ribonucleoprotein H1 (H)
3187
P31943
IP; LC-MS/MS
Tsujimura K , et al. 2015
HNRNPK
heterogeneous nuclear ribonucleoprotein K
3190
P61978
IP; LC-MS/MS
Tsujimura K , et al. 2015
HRAS
v-Ha-ras Harvey rat sarcoma viral oncogene homolog
3265
P01112
ChIP-chip
Yasui DH , et al. 2007
HSPB1
heat shock 27kDa protein 1
3315
P04792
Luciferase reporter assay; ChIP
Leoh LS , et al. 2012
ID1
inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
3397
P41134
ChIP
Peddada S , et al. 2006
ID2
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
3398
Q02363
ChIP
Peddada S , et al. 2006
ID3
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
3399
Q02535
ChIP
Peddada S , et al. 2006
ID4
inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
3400
P47928
ChIP
Peddada S , et al. 2006
IGF2
insulin-like growth factor 2 (somatomedin A)
3481
P01344
ChIP
Ballestar E , et al. 2003
IGFBP2
insulin-like growth factor binding protein 2, 36kDa
3485
P18065
ChIP
Ballestar E , et al. 2004
IL6
interleukin 6 (interferon, beta 2)
3569
B4DVM1
ChIP
Dandrea M , et al. 2009
ITGB3BP
integrin beta 3 binding protein (beta3-endonexin)
23421
Q13352
IP; LC-MS/MS
Huttlin EL , et al. 2015
JMJD1C
jumonji domain containing 1C
221037
Q15652
IP/WB
Sez MA , et al. 2015
JUNB
jun B proto-oncogene
3726
P17275
ChIP
Yasui DH , et al. 2007
KHSRP
KH-type splicing regulatory protein
8570
Q92945
ChIP-chip
Yasui DH , et al. 2007
KIF25-AS1
KIF25 antisense RNA 1
100505879
Q9Y6Z4
ChIP
Artuso R , et al. 2011
KPNA3
karyopherin alpha 3 (importin alpha 4)
3839
O00505
IP; LC-MS/MS
Huttlin EL , et al. 2015
KPNA3
karyopherin alpha 3 (importin alpha 4)
3839
O00505
IP; LC-MS/MS; IP/WB; in vitro binding assay
Baker SA , et al. 2015
KPNA4
karyopherin alpha 4 (importin alpha 3)
3840
O00629
IP; LC-MS/MS
Huttlin EL , et al. 2015
KPNA4
karyopherin alpha 4 (importin alpha 3)
3840
O00629
IP; LC-MS/MS; IP/WB; in vitro binding assay
Baker SA , et al. 2015
KPNB1
karyopherin (importin) beta 1
3837
Q14974
ChIP-chip
Yasui DH , et al. 2007
LBR
lamin B receptor
3930
Q14739
IP/WB
Guarda A , et al. 2009
LENG8
leukocyte receptor cluster (LRC) member 8
114823
Q96PV6
IP; LC-MS/MS
Huttlin EL , et al. 2015
LOC407840
oviduct protein p20
407840
Q6Q2J3
Far Western Blot
Carro S , et al. 2004
MAGEA1
melanoma antigen family A, 1 (directs expression of antigen MZ2-E)
4100
P43355
ChIP
Wischnewski F , et al. 2007
MAGEA2
melanoma antigen family A, 2
4101
P43356
ChIP
Wischnewski F , et al. 2007
MAGEA3
melanoma antigen family A, 3
4102
P43357
ChIP
Wischnewski F , et al. 2007
MEF2C
myocyte enhancer factor 2C
4208
Q06413
Reporter assay
Zweier M , et al. 2010
METAP2
methionyl aminopeptidase 2
10988
P50579
IP; LC-MS/MS
Huttlin EL , et al. 2015
MGMT
O-6-methylguanine-DNA methyltransferase
4255
P16455
ChIP
Danam RP , et al. 2005
MINA
MYC induced nuclear antigen
84864
Q8IUF8
IP; LC-MS/MS
Huttlin EL , et al. 2015
miR-432
microRNA 432
574451
N/A
Luciferase reporter assay; IP/WB
Das E and Bhattacharyya NP 2014
MIR132
microRNA 132
406921
N/A
Luciferase reporter assay
Alvarez-Saavedra M , et al. 2010
MIR152
microRNA 152
406943
N/A
ChIP
Ji W , et al. 2012
MKI67
antigen identified by monoclonal antibody Ki-67
4288
P46013
IP; LC-MS/MS
Huttlin EL , et al. 2015
MLH1
mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)
4292
P40692
ChIP
Xiong Y , et al. 2006
MPP1
membrane protein, palmitoylated 1, 55kDa
4354
Q96Q89
ChIP
Ballestar E , et al. 2004
MT1A
metallothionein 1A
4489
P04731
ChIP
Majumder S , et al. 2005
MYBBP1A
MYB binding protein (P160) 1a
10514
Q9BQG0
IP; LC-MS/MS
Huttlin EL , et al. 2015
NAT10
N-acetyltransferase 10 (GCN5-related)
55226
B4DFD5
IP; LC-MS/MS
Huttlin EL , et al. 2015
NCOR1
nuclear receptor corepressor 1
9611
O75376
GST
Kokura K , et al. 2001
NEMF
nuclear export mediator factor
9147
O60524
IP/WB; GST
Long SW , et al. 2010
NET1
neuroepithelial cell transforming 1
10276
Q5SQI5
ChIP
Ballestar E , et al. 2004
NEUROG1
neurogenin 1
4762
F1T0H3
ChIP
Shu L , et al. 2011
NFATC2IP
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein
84901
Q8NCF5
ChIP
Artuso R , et al. 2011
NFIC
nuclear factor I/C (CCAAT-binding transcription factor)
4782
B7Z4T6
Supershift assay
Ray BK , et al. 2012
NFIX
nuclear factor I/X (CCAAT-binding transcription factor)
4784
Q14938
Supershift assay
Ray BK , et al. 2012
NFY
Nuclear transcription factor Y subunit alpha
4800
P23511
ChIP-Seq
Vitezic M , et al. 2014
NLE1
notchless homolog 1 (Drosophila)
54475
Q9NVX2
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOC2L
nucleolar complex associated 2 homolog (S. cerevisiae)
26155
Q9Y3T9
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOL6
nucleolar protein 6 (RNA-associated)
65083
Q9H6R4
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOL8
nucleolar protein 8
55035
A6H8Z4
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOP16
NOP16 nucleolar protein
51491
Q6PIM0
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOP2
NOP2 nucleolar protein
4839
P46087
IP; LC-MS/MS
Huttlin EL , et al. 2015
NOS2
nitric oxide synthase 2, inducible
4843
P35228
ChIP
Angrisano T , et al. 2012
NOS3
nitric oxide synthase 3 (endothelial cell)
4846
P60323
ChIP
Fish JE , et al. 2005
NSD1
nuclear receptor binding SET domain protein 1
64324
Q96L73
IP; LC-MS/MS
Huttlin EL , et al. 2015
NUP133
nucleoporin 133kDa
55746
Q8WUM0
ChIP-chip
Yasui DH , et al. 2007
NVL
nuclear VCP-like
4931
B4DF43
IP; LC-MS/MS
Huttlin EL , et al. 2015
OR4K1
olfactory receptor, family 4, subfamily K, member 1
79544
Q8NGD4
ChIP
Artuso R , et al. 2011
OR4Q3
olfactory receptor, family 4, subfamily Q, member 3
441669
Q8NH05
ChIP
Artuso R , et al. 2011
PAM
peptidylglycine alpha-amidating monooxygenase
5066
P19021
ChIP
Ballestar E , et al. 2004
PAX6
paired box 6
5080
P26367
ChIP
Ballestar E , et al. 2003
PCDHB1
protocadherin beta 1
29930
Q9Y5F3
ChIP
Miyake K , et al. 2011
PCDHB7
protocadherin beta 7
56129
Q9Y5E2
ChIP
Miyake K , et al. 2011
PDCD11
programmed cell death 11
22984
Q14690
IP; LC-MS/MS
Huttlin EL , et al. 2015
Per1
period homolog 1 (Drosophila)
18626
O35973
ChIP
Alvarez-Saavedra M , et al. 2010
Per2
period circadian clock 2
18627
O54943
ChIP
Alvarez-Saavedra M , et al. 2010
PGK1
phosphoglycerate kinase 1
5230
P00558
ChIP
Ballestar E , et al. 2004
PIKFYVE
phosphoinositide kinase, FYVE finger containing
200576
Q9Y2I7
ChIP
Ballestar E , et al. 2003
PLA2G16
phospholipase A2, group XVI
11145
P53816
ChIP-chip
Yasui DH , et al. 2007
PRDX1
peroxiredoxin 1
5052
Q06830
ChIP-chip
Yasui DH , et al. 2007
PRPF3
PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)
9129
O43395
IP/WB; GST
Long SW , et al. 2010
PRPF40B
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
25766
Q6NWY9
GST; ChIP
Buschdorf JP and Strtling WH 2003
PSIP1
PC4 and SFRS1 interacting protein 1
11168
O75475
Protein microarray; GST; IP/WB
Leoh LS , et al. 2012
PWP2
PWP2 periodic tryptophan protein homolog (yeast)
5822
Q15269
IP; LC-MS/MS
Huttlin EL , et al. 2015
RARB
retinoic acid receptor, beta
5915
F1D8S6
ChIP
Ballestar E , et al. 2003
RASSF1
Ras association (RalGDS/AF-6) domain family member 1
11186
Q9NS23
ChIP
Ballestar E , et al. 2003
RBAK
RB-associated KRAB zinc finger
57786
Q9NYW8
IP; LC-MS/MS
Huttlin EL , et al. 2015
RBM28
RNA binding motif protein 28
55131
B4DU52
IP; LC-MS/MS
Huttlin EL , et al. 2015
RELN
reelin
5649
P78509
ChIP; Methylated DNA immunoprecipitation (MeDIP)
Zhubi A , et al. 2014
RET
ret proto-oncogene
5979
P07949
ChIP
Gonzales ML , et al. 2012
RNASEH2A
ribonuclease H2, subunit A
10535
O75792
ChIP-chip
Yasui DH , et al. 2007
RPF2
ribosome production factor 2 homolog (S. cerevisiae)
84154
Q9H7B2
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL10A
ribosomal protein L10a
4736
P62906
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL12
ribosomal protein L12
6136
P30050
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL13
ribosomal protein L13
6137
A8K4C8
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL15
ribosomal protein L15
6138
P61313
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL17
ribosomal protein L17
6139
P18621
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL18
ribosomal protein L18
6141
Q07020
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL26L1
ribosomal protein L26-like 1
51121
Q9UNX3
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL27
ribosomal protein L27
6155
P61353
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL29
ribosomal protein L29
6159
P47914
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL3
ribosomal protein L3
6122
P39023
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL32
ribosomal protein L32
6161
P62910
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL36
ribosomal protein L36
25873
Q9Y3U8
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL5
ribosomal protein L5
6125
A2RUM7
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL7A
ribosomal protein L7a
6130
P62424
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPL8
ribosomal protein L8
6132
P62917
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPLP2
ribosomal protein, large, P2
6181
P05387
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPP40
ribonuclease P/MRP 40kDa subunit
10799
O75818
IP; LC-MS/MS
Huttlin EL , et al. 2015
RPS8
ribosomal protein S8
6202
P62241
IP; LC-MS/MS
Huttlin EL , et al. 2015
RRP1B
ribosomal RNA processing 1 homolog B (S. cerevisiae)
23076
Q14684
IP; LC-MS/MS
Huttlin EL , et al. 2015
RRP7A
ribosomal RNA processing 7 homolog A (S. cerevisiae)
27341
Q9Y3A4
IP; LC-MS/MS
Huttlin EL , et al. 2015
RRP8
ribosomal RNA processing 8, methyltransferase, homolog (yeast)
23378
O43159
IP; LC-MS/MS
Huttlin EL , et al. 2015
SDAD1
SDA1 domain containing 1
55153
Q9NVU7
IP; LC-MS/MS
Huttlin EL , et al. 2015
SDHD
succinate dehydrogenase complex, subunit D, integral membrane protein
6392
O14521
ChIP-chip
Yasui DH , et al. 2007
SIN3B
SIN3 transcription regulator homolog B (yeast)
23309
O75182
IP; LC-MS/MS
Tsujimura K , et al. 2015
SIRT1
sirtuin 1
23411
A8K128
IP/WB; in vitro deacetylation assay
Zocchi L and Sassone-Corsi P 2012
SKI
v-ski sarcoma viral oncogene homolog (avian)
6497
P12755
GST; IP/WB
Kokura K , et al. 2001
SLC6A2
solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
6530
P23975
ChIP
Esler M , et al. 2009
SMARCA2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
6595
P51531
IP/WB
Harikrishnan KN , et al. 2005
SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
6598
Q12824
IP/WB
Harikrishnan KN , et al. 2005
SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
6601
Q8TAQ2
IP; LC-MS/MS
Tsujimura K , et al. 2015
SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
6603
Q92925
IP; LC-MS/MS
Tsujimura K , et al. 2015
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
6605
Q969G3
IP/WB
Harikrishnan KN , et al. 2005
SMC3
structural maintenance of chromosomes 3
9126
Q9UQE7
IP/WB
Gonzales ML , et al. 2012
SNURF
SNRPN upstream reading frame
8926
Q9Y675
ChIP-chip
Yasui DH , et al. 2007
SP1
Sp1 transcription factor
6667
P08047
IP/WB
Koch C and Strtling WH 2004
SPNS1
spinster homolog 1 (Drosophila)
83985
Q9H2V7
ChIP
Artuso R , et al. 2011
SRBD1
S1 RNA binding domain 1
55133
Q8N5C6
IP; LC-MS/MS
Huttlin EL , et al. 2015
SRSF7
serine/arginine-rich splicing factor 7
6432
Q16629
ChIP-chip
Yasui DH , et al. 2007
SRSF8
Serine/arginine-rich splicing factor 8
10929
Q9BRL6-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
STMN4
stathmin-like 4
81551
Q9H169
ChIP-chip
Yasui DH , et al. 2007
SYT3
synaptotagmin III
20981
G3X9Y1
ChIP-chip
Yasui DH , et al. 2007
TAF1A
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
9015
A8K4K5
IP; LC-MS/MS
Huttlin EL , et al. 2015
TAF1B
TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
9014
Q53T94
IP; LC-MS/MS
Huttlin EL , et al. 2015
TAF1C
TATA box-binding protein-associated factor RNA polymerase I subunit C
9013
Q15572-6
IP; LC-MS/MS
Huttlin EL , et al. 2015
TAF1D
TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
79101
Q9H5J8
IP; LC-MS/MS
Huttlin EL , et al. 2015
TEX10
testis expressed 10
54881
Q9NXF1
IP; LC-MS/MS
Huttlin EL , et al. 2015
TFB1M
transcription factor B1, mitochondrial
51106
E5KTM5
IP; LC-MS/MS
Huttlin EL , et al. 2015
TGFB1
transforming growth factor, beta 1
7040
P01137
IP/WB; GST
Matsumura S , et al. 2009
TOP3A
topoisomerase (DNA) III alpha
7156
Q13472
IP; LC-MS/MS
Huttlin EL , et al. 2015
TP53
tumor protein p53
7157
P04637
IP/WB; GST
Arabsolghar R , et al. 2012
TRIP12
thyroid hormone receptor interactor 12
9320
Q14669
IP; LC-MS/MS
Huttlin EL , et al. 2015
TRMT1L
tRNA methyltransferase 1 homolog (S. cerevisiae)-like
81627
B4DXX1
IP; LC-MS/MS
Huttlin EL , et al. 2015
TRPC6
Short transient receptor potential channel 6
7225
Q9Y210
qRT-PCR; Peptide microarray; IP/WB; Immunofluorescence; Electrophysiology
Griesi-Oliveira K , et al. 2014
TSPAN4
tetraspanin 4
7106
O14817
ChIP-chip
Yasui DH , et al. 2007
TSSC1
tumor suppressing subtransferable candidate 1
7260
Q53HC9
ChIP
Artuso R , et al. 2011
TUBGCP5
tubulin, gamma complex associated protein 5
114791
E9PB12
ChIP-chip
Yasui DH , et al. 2007
UCHL1
ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
7345
P09936
ChIP-chip
Yasui DH , et al. 2007
URB1
URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
9875
O60287
IP; LC-MS/MS
Huttlin EL , et al. 2015
URB2
URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
9816
Q14146
IP; LC-MS/MS
Huttlin EL , et al. 2015
VEGFA
vascular endothelial growth factor A
7422
P15692
EMSA
Lapchak PH , et al. 2004
WDR36
WD repeat domain 36
134430
Q68E02
IP; LC-MS/MS
Huttlin EL , et al. 2015
WDR83OS
WD repeat domain 83 opposite strand
51398
Q9Y284
ChIP-chip
Yasui DH , et al. 2007
YBX1
Y box binding protein 1
4904
P67809
IP/WB
Young JI , et al. 2005
YBX1
Y box binding protein 1
4904
P67809
IP; LC-MS/MS
Tsujimura K , et al. 2015
ZCCHC17
zinc finger, CCHC domain containing 17
51538
Q9NP64
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF354A
zinc finger protein 354A
6940
O60765
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF483
zinc finger protein 483
158399
Q8TF39
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF593
Zinc finger protein 593
51042
O00488
IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF800
zinc finger protein 800
168850
Q2TB10
IP; LC-MS/MS
Huttlin EL , et al. 2015
Arrdc4
arrestin domain containing 4
66412
Q8VD69
ChIP
Horike S , et al. 2004
ATRX
alpha thalassemia/mental retardation syndrome X-linked homolog (human)
22589
Q61687
qRT-PCR; ChIP; Chromatin conformation capture
Kernohan KD , et al. 2014
Cacna2d3
calcium channel, voltage-dependent, alpha2/delta subunit 3
12294
Q9Z1L5
ChIP
Horike S , et al. 2004
Camk2a
calcium/calmodulin-dependent protein kinase II alpha
12322
P11798
IP; LC-MS/MS
Li R , et al. 2016
Camk2b
calcium/calmodulin-dependent protein kinase II, beta
12323
P28652
IP; LC-MS/MS
Li R , et al. 2016
Camk2d
calcium/calmodulin-dependent protein kinase II, delta
108058
Q6PHZ2
IP; LC-MS/MS
Li R , et al. 2016
Camk2g
calcium/calmodulin-dependent protein kinase II gamma
12325
Q923T9
IP; LC-MS/MS
Li R , et al. 2016
CamKII
Calcium/calmodulin-dependent protein kinase type II subunit delta
108058
Q6PHZ2
M2 affinity gel assay; IP/WB; Immunohistochemistry; qRT-PCR; in vitro kinase assay
Zhou Z , et al. 2006
CamKIV
Calcium/calmodulin-dependent protein kinase type IV
P08414
IP/WB; ChIP; in vitro kinase assay; qRT-PCR
Tao J , et al. 2009
Cbx1
chromobox 1
12412
P83917
IP; LC-MS/MS
Li R , et al. 2016
Cbx3
chromobox 3
12417
P23198
IP; LC-MS/MS
Li R , et al. 2016
Cbx5
chromobox homolog 5
23468
P45973
IP/WB
Agarwal N , et al. 2007
Cbx5
chromobox homolog 5
23468
P45973
IP; LC-MS/MS
Li R , et al. 2016
Cdk7
cyclin-dependent kinase 7
12572
Q03147
IP; LC-MS/MS
Li R , et al. 2016
Cntn2
contactin 2
21367
Q61330
ChIP
Horike S , et al. 2004
Crh
corticotropin releasing hormone
12918
Q8CIT0
ChIP
McGill BE , et al. 2006
Csnk2b
casein kinase 2, beta polypeptide
13001
P67871
IP; LC-MS/MS
Li R , et al. 2016
Cyc1
cytochrome c-1
66445
Q9D0M3
ChIP
Horike S , et al. 2004
Ddx1
DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
104721
Q91VR5
IP; LC-MS/MS
Tsujimura K , et al. 2015
Ddx10
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
77591
Q80Y44
IP; LC-MS/MS
Tsujimura K , et al. 2015
Ddx17
DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
67040
Q501J6
IP; LC-MS/MS
Tsujimura K , et al. 2015
Ddx5
DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
13207
Q8BTS0
IP; LC-MS/MS; IP/WB
Tsujimura K , et al. 2015
Ddx5
DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
13207
Q8BTS0
IP; LC-MS/MS
Li R , et al. 2016
DGCR8
Microprocessor complex subunit DGCR8
94223
Q9EQM6
GST; IP/WB; FRET
Cheng TL , et al. 2014
Dgcr8
Microprocessor complex subunit DGCR8
94223
Q9EQM6
IP/WB
Tsujimura K , et al. 2015
Dhx9
DEAH (Asp-Glu-Ala-His) box polypeptide 9
13211
O70133
IP; LC-MS/MS; IP/WB
Li R , et al. 2016
Dlx3
distal-less homeobox 3
13393
Q64205
ChIP
Horike S , et al. 2004
Dlx4
distal-less homeobox 4
1748
Q92988
ChIP
Horike S , et al. 2004
Dmpk
dystrophia myotonica-protein kinase
13400
P54265
ChIP
Horike S , et al. 2004
Dmwd
dystrophia myotonica-containing WD repeat motif
13401
Q08274
ChIP
Horike S , et al. 2004
Drosha
Ribonuclease 3
14000
Q5HZJ0
IP/WB
Tsujimura K , et al. 2015
Eif5b
eukaryotic translation initiation factor 5B
226982
Q05D44
IP; LC-MS/MS
Li R , et al. 2016
Evc
Ellis van Creveld gene syndrome
59056
P57680
ChIP
Horike S , et al. 2004
Exosc4
exosome component 4
109075
Q542B0
ChIP
Horike S , et al. 2004
Fam19a1
family with sequence similarity 19, member A1
320265
Q7TPG8
ChIP
Horike S , et al. 2004
Fam203a
family with sequence similarity 203, member A
59053
Q8C3I8
ChIP
Horike S , et al. 2004
Fbxo46
F-box protein 46
243867
Q8BG80
ChIP
Horike S , et al. 2004
Foxa3
forkhead box A3
15377
P35584
ChIP
Horike S , et al. 2004
Fras1
Fraser syndrome 1 homolog (human)
231470
Q80T14
ChIP
Horike S , et al. 2004
Fus
fused in sarcoma
233908
P56959
IP; LC-MS/MS; IP/WB
Li R , et al. 2016
Fut8
fucosyltransferase 8
53618
Q9WTS2
ChIP
Horike S , et al. 2004
Fxyd1
FXYD domain containing ion transport regulator 1
56188
Q9Z239
ChIP
Jordan C , et al. 2007
Gad1
glutamate decarboxylase 1 (brain, 67kDa)
14415
P48318
ChIP
Dong E , et al. 2005
Gad2
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
14417
P48320
ChIP
Dong E , et al. 2005
Gpaa1
GPI anchor attachment protein 1
14731
Q9WTK3
ChIP
Horike S , et al. 2004
Gria2
glutamate receptor, ionotropic, AMPA2 (alpha 2)
14800
P23819
RNA-Seq; ChIP; qRT-PCR
Li R , et al. 2016
Grina
glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
66168
Q9ESF4
ChIP
Horike S , et al. 2004
Grm2
glutamate receptor, metabotropic 2
108068
Q14BI2
ChIP
Matrisciano F , et al. 2011
Hdac1
Histone deacetylase 1
433759
O09106
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hdac1
Histone deacetylase 1
433759
O09106
IP; LC-MS/MS; IP/WB
Li R , et al. 2016
Hdac2
Histone deacetylase 2
15182
P70288
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
53379
O88569
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpc
heterogeneous nuclear ribonucleoprotein C
15381
Q9Z204
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpc
heterogeneous nuclear ribonucleoprotein C
15381
Q9Z204
IP; LC-MS/MS
Li R , et al. 2016
Hnrnpd
heterogeneous nuclear ribonucleoprotein D
11991
Q60668
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpf
heterogeneous nuclear ribonucleoprotein F
98758
Q9Z2X1
IP; LC-MS/MS
Li R , et al. 2016
Hnrnph1
heterogeneous nuclear ribonucleoprotein H1
59013
O35737
IP; LC-MS/MS
Li R , et al. 2016
Hnrnph2
heterogeneous nuclear ribonucleoprotein H2
56258
P70333
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnph2
heterogeneous nuclear ribonucleoprotein H2
56258
P70333
IP; LC-MS/MS
Li R , et al. 2016
Hnrnpm
heterogeneous nuclear ribonucleoprotein M
76936
Q9D0E1
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpm
heterogeneous nuclear ribonucleoprotein M
76936
Q9D0E1
IP; LC-MS/MS
Li R , et al. 2016
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
51810
Q8VEK3
IP; LC-MS/MS
Tsujimura K , et al. 2015
Hnrnpul2
heterogeneous nuclear ribonucleoprotein U-like 2
68693
Q00PI9
IP; LC-MS/MS
Li R , et al. 2016
Ifng
interferon gamma
15978
P01580
ChIP
Yang T , et al. 2012
Igfbp3
insulin-like growth factor binding protein 3
24484
P15473
ChIP
Itoh M , et al. 2007
Irf2bp1
interferon regulatory factor 2 binding protein 1
272359
Q8R3Y8
ChIP
Horike S , et al. 2004
Itga3
integrin alpha 3
16400
Q62470
ChIP
Horike S , et al. 2004
Jakmip1
janus kinase and microtubule interacting protein 1
76071
Q8BVL9
ChIP
Horike S , et al. 2004
Kat7
K(lysine) acetyltransferase 7
217127
Q1AJD0
ChIP
Horike S , et al. 2004
Kirrel2
kin of IRRE like 2 (Drosophila)
243911
Q7TSU7
ChIP
Lee W , et al. 2014
Lrrc7
leucine rich repeat containing 7
242274
Q80TE7
ChIP
Horike S , et al. 2004
Maf1
MAF1 homolog (S. cerevisiae)
68877
Q9D0U6
ChIP
Horike S , et al. 2004
Matr3
matrin 3
17184
Q8K310
IP; LC-MS/MS
Li R , et al. 2016
Mbd2
methyl-CpG binding domain protein 2
17191
Q9Z2E1
IP; LC-MS/MS
Li R , et al. 2016
Mbd3
methyl-CpG binding domain protein 3
17192
Q9Z2D8
IP; LC-MS/MS
Li R , et al. 2016
Meg3
maternally expressed 3 (non-protein coding)
17263
Q8CCV7
ChIP
Jordan C , et al. 2007
miR-132
microRNA 132
387150
N/A
qRT-PCR; IP/WB; Immunofluorescence
Sadegh MK , et al. 2015
miR-212
microRNA 212
387208
N/A
qRT-PCR; IP/WB; Immunofluorescence
Sadegh MK , et al. 2015
Mir106a
microRNA 106a
723829
N/A
ChIP-chip
Wu H , et al. 2010
Mir124b
microRNA 124b
387234
N/A
ChIP-chip
Wu H , et al. 2010
Mir128-2
microRNA 128-2
723815
N/A
ChIP-chip
Wu H , et al. 2010
Mir134
microRNA 134
387152
N/A
ChIP-chip
Wu H , et al. 2010
Mir135a1
microRNA 135a-1
387153
N/A
ChIP-chip
Wu H , et al. 2010
Mir137
microRNA 137
387155
N/A
ChIP-chip
Wu H , et al. 2010
Mir139
microRNA 139
387157
N/A
ChIP-chip
Wu H , et al. 2010
Mir142
microRNA 142
387160
N/A
ChIP-chip
Wu H , et al. 2010
Mir143
microRNA 143
387161
N/A
ChIP-chip
Wu H , et al. 2010
Mir145
microRNA 145
387163
N/A
ChIP-chip
Wu H , et al. 2010
Mir148b
microRNA 148b
724064
N/A
ChIP-chip
Wu H , et al. 2010
Mir150
microRNA 150
387168
N/A
ChIP-chip
Wu H , et al. 2010
Mir151
microRNA 151
387169
N/A
ChIP-chip
Wu H , et al. 2010
Mir154
microRNA 154
387172
N/A
ChIP-chip
Wu H , et al. 2010
Mir17
microRNA 17
723905
N/A
ChIP-chip
Wu H , et al. 2010
Mir18
microRNA 18
387135
N/A
ChIP-chip
Wu H , et al. 2010
Mir181c
microRNA 181c
723819
N/A
ChIP-chip
Wu H , et al. 2010
Mir181d
microRNA 181d
100049549
N/A
ChIP-chip
Wu H , et al. 2010
Mir193b
microRNA 193b
100124432
N/A
ChIP-chip
Wu H , et al. 2010
Mir195
microRNA 195
387190
N/A
ChIP-chip
Wu H , et al. 2010
Mir19a
microRNA 19a
723891
N/A
ChIP-chip
Wu H , et al. 2010
Mir204
microRNA 204
387200
N/A
ChIP-chip
Wu H , et al. 2010
Mir205
microRNA 205
387201
N/A
ChIP-chip
Wu H , et al. 2010
Mir207
microRNA 207
387203
N/A
ChIP-chip
Wu H , et al. 2010
Mir20a
microRNA 20a
387139
N/A
ChIP-chip
Wu H , et al. 2010
Mir211
microRNA 211
387207
N/A
ChIP-chip
Wu H , et al. 2010
Mir25
microRNA 25
723926
N/A
ChIP-chip
Wu H , et al. 2010
Mir28
microRNA 28
723830
N/A
ChIP-chip
Wu H , et al. 2010
Mir299
microRNA 299
723927
N/A
ChIP-chip
Wu H , et al. 2010
Mir300
microRNA 300
723833
N/A
ChIP-chip
Wu H , et al. 2010
Mir302a
microRNA 302a
723920
N/A
ChIP-chip
Wu H , et al. 2010
Mir302b
microRNA 302b
723948
N/A
ChIP-chip
Wu H , et al. 2010
Mir302c
microRNA 302c
723835
N/A
ChIP-chip
Wu H , et al. 2010
Mir302d
microRNA 302d
723928
N/A
ChIP-chip
Wu H , et al. 2010
Mir30c-1
microRNA 30c-1
387227
N/A
ChIP-chip
Wu H , et al. 2010
Mir30e
microRNA 30e
723836
N/A
ChIP-chip
Wu H , et al. 2010
Mir323
microRNA 323
723839
N/A
ChIP-chip
Wu H , et al. 2010
Mir326
microRNA 326
723840
N/A
ChIP-chip
Wu H , et al. 2010
Mir329
microRNA 329
723842
N/A
ChIP-chip
Wu H , et al. 2010
Mir33
microRNA 33
723897
N/A
ChIP-chip
Wu H , et al. 2010
Mir330
microRNA 330
724063
N/A
ChIP-chip
Wu H , et al. 2010
Mir338
microRNA 338
723844
N/A
ChIP-chip
Wu H , et al. 2010
Mir339
microRNA 339
723898
N/A
ChIP-chip
Wu H , et al. 2010
Mir341
microRNA 341
723846
N/A
ChIP-chip
Wu H , et al. 2010
Mir345
microRNA 345
723946
N/A
ChIP-chip
Wu H , et al. 2010
Mir34b
microRNA 34b
723849
N/A
ChIP-chip
Wu H , et al. 2010
Mir34c
microRNA 34c
723932
N/A
ChIP-chip
Wu H , et al. 2010
Mir365-1
microRNA 365-1
723899
N/A
ChIP-chip
Wu H , et al. 2010
Mir367
microRNA 367
723911
N/A
ChIP-chip
Wu H , et al. 2010
Mir369
microRNA 369
723933
N/A
ChIP-chip
Wu H , et al. 2010
Mir370
microRNA 370
723854
N/A
ChIP-chip
Wu H , et al. 2010
Mir376a
microRNA 376a
723855
N/A
ChIP-chip
Wu H , et al. 2010
Mir376b
microRNA 376b
723934
N/A
ChIP-chip
Wu H , et al. 2010
Mir376c
microRNA 376c
723856
N/A
ChIP-chip
Wu H , et al. 2010
Mir377
microRNA 377
723857
N/A
ChIP-chip
Wu H , et al. 2010
Mir378
microRNA 378
723889
N/A
ChIP-chip
Wu H , et al. 2010
Mir379
microRNA 379
723858
N/A
ChIP-chip
Wu H , et al. 2010
Mir380
microRNA 380
723859
N/A
ChIP-chip
Wu H , et al. 2010
Mir381
microRNA 381
723935
N/A
ChIP-chip
Wu H , et al. 2010
Mir382
microRNA 382
723912
N/A
ChIP-chip
Wu H , et al. 2010
Mir409
microRNA 409
723862
N/A
ChIP-chip
Wu H , et al. 2010
Mir410
microRNA 410
723863
N/A
ChIP-chip
Wu H , et al. 2010
Mir411
microRNA 411
723936
N/A
ChIP-chip
Wu H , et al. 2010
Mir412
microRNA 412
723913
N/A
ChIP-chip
Wu H , et al. 2010
Mir449a
microRNA 449a
723868
N/A
ChIP-chip
Wu H , et al. 2010
Mir449b
microRNA 449b
100190765
N/A
ChIP-chip
Wu H , et al. 2010
Mir453
microRNA 453
100124484
N/A
ChIP-chip
Wu H , et al. 2010
Mir485
microRNA 485
723875
N/A
ChIP-chip
Wu H , et al. 2010
Mir487b
microRNA 487b
723940
N/A
ChIP-chip
Wu H , et al. 2010
Mir488
microRNA 488
735253
N/A
ChIP-chip
Wu H , et al. 2010
Mir494
microRNA 494
723878
N/A
ChIP-chip
Wu H , et al. 2010
Mir495
microRNA 495
751522
N/A
ChIP-chip
Wu H , et al. 2010
Mir496
microRNA 496
751524
N/A
ChIP-chip
Wu H , et al. 2010
Mir497
microRNA 497
751537
N/A
ChIP-chip
Wu H , et al. 2010
Mir539
microRNA 539
723917
N/A
ChIP-chip
Wu H , et al. 2010
Mir541
microRNA 541
723941
N/A
ChIP-chip
Wu H , et al. 2010
Mir543
microRNA 543
723881
N/A
ChIP-chip
Wu H , et al. 2010
Mir544
microRNA 544
100124450
N/A
ChIP-chip
Wu H , et al. 2010
Mir654
microRNA 654
100124453
N/A
ChIP-chip
Wu H , et al. 2010
Mir666
microRNA 666
751521
N/A
ChIP-chip
Wu H , et al. 2010
Mir671
microRNA 671
735264
N/A
ChIP-chip
Wu H , et al. 2010
Mir7-1
microRNA 7-1
723902
N/A
ChIP-chip
Wu H , et al. 2010
Mir708
microRNA 708
735284
N/A
ChIP-chip
Wu H , et al. 2010
Mir758
microRNA 758
791071
N/A
ChIP-chip
Wu H , et al. 2010
Mir802
microRNA 802
791074
N/A
ChIP-chip
Wu H , et al. 2010
Mir882
microRNA 882
100124461
N/A
ChIP-chip
Wu H , et al. 2010
Mir9-1
microRNA 9-1
387133
N/A
ChIP-chip
Wu H , et al. 2010
Mir93
microRNA 93
723885
N/A
ChIP-chip
Wu H , et al. 2010
Mrpl1
mitochondrial ribosomal protein L1
94061
Q9D3F3
ChIP
Horike S , et al. 2004
Mug1
murinoglobulin 1
17836
P28665
ChIP
Horike S , et al. 2004
Mug2
murinoglobulin 2
17837
P28666
ChIP
Horike S , et al. 2004
Myo3a
myosin IIIA
667663
F6QNG5
ChIP
Horike S , et al. 2004
Mypop
Myb-related transcription factor, partner of profilin
232934
Q8R4U1
ChIP
Horike S , et al. 2004
Nanos2
nanos homolog 2 (Drosophila)
378430
I6ZHM2
ChIP
Horike S , et al. 2004
Nfasc
neurofascin
269116
E9PW06
ChIP
Horike S , et al. 2004
Nfkbiz
nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
80859
Q9EST8
ChIP
Horike S , et al. 2004
NFY
Nuclear transcription factor Y subunit alpha
18044
P23708
ChIP-Seq
Vitezic M , et al. 2014
Ngfr
nerve growth factor receptor (TNFR superfamily, member 16)
18053
Q8CFT3
ChIP
Horike S , et al. 2004
Nnmt
nicotinamide N-methyltransferase
18113
O55239
ChIP
Horike S , et al. 2004
Npm1
nucleophosmin 1
18148
Q61937
IP; LC-MS/MS
Li R , et al. 2016
Nrxn3
neurexin III
18191
Q6P9K9
ChIP
Horike S , et al. 2004
Olr1
oxidized low density lipoprotein (lectin-like) receptor 1
108078
Q9EQ09
ChIP
Horike S , et al. 2004
Oplah
5-oxoprolinase (ATP-hydrolysing)
75475
Q8K010
ChIP
Horike S , et al. 2004
Oprm1
opioid receptor, mu 1
18390
P42866
ChIP
Hwang CK , et al. 2007
Pax5
paired box gene 5
18507
Q02650
ChIP
Horike S , et al. 2004
Pcdh20
protocadherin 20
219257
Q8BIZ0
ChIP
Lee W , et al. 2014
Peg10
paternally expressed 10
170676
Q7TN75
ChIP
Horike S , et al. 2004
Phb
prohibitin
18673
P67778
ChIP
Horike S , et al. 2004
Plec1
plectin
18810
E9QN87
ChIP
Horike S , et al. 2004
Pomc
"NPP "
18976
P01193
qRT-PCR; ChIP; Chromatin conformation capture
Torres-Andrade R , et al. 2014
Ppp1r9a
protein phosphatase 1, regulatory (inhibitor) subunit 9A
243725
Q7TN74
ChIP
Horike S , et al. 2004
Prmt6
protein arginine N-methyltransferase 6
99890
Q6NZB1
IP/WB
Dhawan S , et al. 2011
Prpf19
pre-mRNA processing factor 19
28000
Q99KP6
IP; LC-MS/MS
Li R , et al. 2016
Prpf40a
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
56194
Q9R1C7
Far Western Blot
Bedford MT , et al. 1997
Psip1
PC4 and SFRS1 interacting protein 1
101739
Q99JF8
IP; LC-MS/MS; IP/WB
Li R , et al. 2016
Pura
purine rich element binding protein A
19290
P42669
IP; LC-MS/MS
Li R , et al. 2016
Rbbp4
retinoblastoma binding protein 4
19646
Q60972
IP; LC-MS/MS
Li R , et al. 2016
Rbbp5
retinoblastoma binding protein 5
213464
Q8BX09
ChIP
Horike S , et al. 2004
Rbmx
RNA binding motif protein, X chromosome
19655
Q9WV02
IP; LC-MS/MS
Tsujimura K , et al. 2015
Reln
reelin
19699
Q60841
ChIP
Jordan C , et al. 2007
Rsph6a
radial spoke head 6 homolog A (Chlamydomonas)
83434
Q8CDR2
ChIP
Horike S , et al. 2004
Safb2
scaffold attachment factor B2
224902
Q80YR5
IP; LC-MS/MS
Li R , et al. 2016
Sap18
Sin3-associated polypeptide 18
20220
O55128
IP; LC-MS/MS
Li R , et al. 2016
Sgce
sarcoglycan, epsilon
20392
O70258
ChIP
Horike S , et al. 2004
Six5
sine oculis-related homeobox 5
20475
P70178
ChIP
Horike S , et al. 2004
Smarca1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
93761
Q6PGB8
IP; LC-MS/MS
Tsujimura K , et al. 2015
Smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
67155
Q6DIC0
IP; LC-MS/MS
Li R , et al. 2016
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
20586
Q3TKT4
IP; LC-MS/MS
Tsujimura K , et al. 2015
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
20586
Q3TKT4
IP; LC-MS/MS
Li R , et al. 2016
Smarcc1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
20588
P97496
IP; LC-MS/MS
Tsujimura K , et al. 2015
Smarcc2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
68094
Q6PDG5
IP; LC-MS/MS
Li R , et al. 2016
Smarcd1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
83797
Q61466
IP; LC-MS/MS
Li R , et al. 2016
Smarcd2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
83796
Q99JR8
IP; LC-MS/MS
Li R , et al. 2016
Smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
66993
Q6P9Z1
IP; LC-MS/MS
Li R , et al. 2016
Smc1a
structural maintenance of chromosomes 1A
24061
Q9CU62
IP/WB; ChIP
Kernohan KD , et al. 2010
Smc1a
structural maintenance of chromosomes 1A
24061
Q9CU62
IP; LC-MS/MS
Li R , et al. 2016
Smc3
structural maintenance of chromosomes 3
13006
Q9CW03
IP; LC-MS/MS
Li R , et al. 2016
SNAT1
solute carrier family 38, member 1
105727
Q8K2P7
Immunofluorescence; qRT-PCR
Jin LW , et al. 2015
Snrpd3
small nuclear ribonucleoprotein D3
67332
P62320
IP; LC-MS/MS
Li R , et al. 2016
Snrpn
small nuclear ribonucleoprotein N
20646
P63163
ChIP
Samaco RC , et al. 2004
Soat1
sterol O-acyltransferase 1
20652
Q61263
ChIP
Horike S , et al. 2004
SP1
trans-acting transcription factor 1
20683
O89090
ChIP-Seq
Vitezic M , et al. 2014
Spi1
spleen focus forming virus (SFFV) proviral integration oncogene spi1
20375
P17433
GST; IP/WB
Suzuki M , et al. 2003
Sprn
shadow of prion protein
212518
Q8BWU1
ChIP
Horike S , et al. 2004
Srsf4
serine/arginine-rich splicing factor 4
57317
Q8VE97
IP; LC-MS/MS
Tsujimura K , et al. 2015
Srsf6
serine/arginine-rich splicing factor 6
67996
Q3TWW8
IP; LC-MS/MS
Tsujimura K , et al. 2015
Srsf7
serine/arginine-rich splicing factor 7
225027
Q8BL97
IP; LC-MS/MS
Tsujimura K , et al. 2015
St3gal1
ST3 beta-galactoside alpha-2,3-sialyltransferase 1
20442
P54751
ChIP
Horike S , et al. 2004
Syt13
synaptotagmin XIII
80976
Q9EQT6
ChIP
Horike S , et al. 2004
Tac4
tachykinin 4
93670
Q99N14
ChIP
Horike S , et al. 2004
Tardbp
TAR DNA binding protein
230908
Q921F2
RNA immunoprecipitation (RIP); IP; MS
Sephton CF , et al. 2010
Tardbp
TAR DNA binding protein
230908
Q921F2
IP; LC-MS/MS; IP/WB
Li R , et al. 2016
Tmod3
tropomodulin 3
50875
Q9JHJ0
IP; LC-MS/MS
Li R , et al. 2016
Trp53bp1
transformation related protein 53 binding protein 1
27223
P70399
IP; LC-MS/MS
Li R , et al. 2016
Trpc3
transient receptor potential cation channel, subfamily C, member 3
22065
Q9QZC1
ChIP
Li W , et al. 2012
Tsix
X (inactive)-specific transcript, antisense
22097
N/A
ChIP
Son J , et al. 2012
Uba1y
ubiquitin-activating enzyme, Chr Y
22202
P31254
ChIP
Horike S , et al. 2004
Uqcrc1
ubiquinol-cytochrome c reductase core protein I
22273
Q9CZ13
ChIP
Kriaucionis S , et al. 2006
Vamp7
vesicle-associated membrane protein 7
20955
P70280
ChIP
Matarazzo MR , et al. 2006
Zbtb16
zinc finger and BTB domain containing 16
235320
Q3UQ17
ChIP
Horike S , et al. 2004
Acta2
smooth muscle alpha-actin
81633
B0BMT0
EMSA; ChIP
Hu B , et al. 2011
ATRX
alpha thalassemia/mental retardation syndrome X-linked
246284
P70486
Y2H
Nan X , et al. 2007
Bdnf
brain-derived neurotrophic factor
24225
P23363
ChIP
Chen WG , et al. 2003
Bdnf
brain-derived neurotrophic factor
24225
P23363
ChIP-qPCR
Liang Z , et al. 2015
Creb1
cAMP responsive element binding protein 1
81646
P15337
IP/WB
Tai DJ , et al. 2016
Dnmt1
DNA (cytosine-5-)-methyltransferase 1
84350
Q9Z330
IP/WB
Kimura H and Shiota K 2002
FOXG1
forkhead box G1
24370
Q00939
IP/WB
Dastidar SG , et al. 2012
Gadd45b
Growth arrest and DNA-damage-inducible 45 beta
299626
Q5U3Z2
qRT-PCR; MSRE assay
Kigar SL , et al. 2015
Gfap
glial fibrillary acidic protein
24387
P47819
ChIP
Setoguchi H , et al. 2006
Grin2b
glutamate receptor, ionotropic, N-methyl D-aspartate 2B
24410
Q00960
ChIP
Lee S , et al. 2008
H2afx
H2A histone family, member X
500987
D3ZXP3
IP/WB
Thambirajah AA , et al. 2011
H3f3b
H3 histone, family 3B
117056
B0BMY8
IP/WB
Thambirajah AA , et al. 2011
Hmgb1
high-mobility group box 1
25459
P63159
GST
Dintilhac A and Bernus J 2001
Nfkbia
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
18035
Q9Z1E3
XChIP
Mann J , et al. 2006
NLGN1
neuroligin 1
116647
Q62765
IP/WB; ChIP; Fluorescence Polarization (FP)
Bie B , et al. 2014
Pdyn
prodynorphin
29190
F1M7S3
ChIP
Reed B , et al. 2012
Pias1
protein inhibitor of activated STAT, 1
300772
G3V9T0
in vitro SUMOylation assay; IP/WB; in vivo SUMOylation assay; Co-localization
Tai DJ , et al. 2016
Pparg
peroxisome proliferator-activated receptor gamma
25664
O88275
ChIP
Mann J , et al. 2009
Rbpj
recombination signal binding protein for immunoglobulin kappa J region
679028
N/A
IP/WB
Mann J , et al. 2006
Rcor1
REST corepressor 1
314458
P49743
IP/WB
Lunyak VV , et al. 2002
Sin3a
SIN3 homolog A, transcription regulator (yeast)
363067
D3ZBP2
GST; IP/WB
Nan X , et al. 1998
Suv39h1
suppressor of variegation 3-9 homolog 1 (Drosophila)
302553
B1H256
IP/WB
Lunyak VV , et al. 2002
CA2
carbonic anhydrase II
396257
P07630
ChIP
Rietveld LE , et al. 2002
gs17
gastrula-specific protein 17
397898
P07733
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
hes4-a
hairy and enhancer of split 4
398579
Q90Z12
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
sin3b
SIN3 homolog B, transcription regulator (yeast)
100036844
A1L1H5
IP/WB
Jones PL , et al. 1998
SOX2
Transcription factor Sox-2
398000
O42569
Antibody Microarray
Bestman JE , et al. 2015
t-a
T, brachyury homolog
399275
P24781
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
tcea1
transcription elongation factor A (SII), 1
594866
Q91980
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
tfcp2
transcription factor CP2
403094
Q6NZH6
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
trim33
tripartite motif containing 33
733198
Q56R14
Methylated DNA immunoprecipitation (MeDIP); Bisulfite sequencing
Bogdanovi O and Veenstra GJ 2011
id1
inhibitor of DNA binding 1
30493
Q6IQW5
ChIP
Gao H , et al. 2015