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Relevance to Autism

Application of a modified transmission disequilibrium test to 13,052 male ASD probands from the Simons Simplex Collection and the SPARK cohort and 2,295 male sibling controls in Wang et al., 2023 identified MAGEC3 as a gene displaying significant overtransmission of rare X-linked damaging variants to ASD probands versus male sibling controls (P = 2.10E-07, chromosome-X-wide Bonferroni corrected P = 0.00017); this gene also passed exome-wide significance (exome-wide Bonferroni corrected P = 0.0041). A study examining rare hemizygous knockouts in male ASD probands had previously identified the same MAGEC3 nonsense variant (p.Gln193Ter) in two separate male probands; this variant was not observed in female ASD probands or in either male or female controls in this study (Lim et al., 2013). Additional hemizygous variants in MAGEC3 have also been identified in male ASD probands from the AGRE cohort, including a frameshift variant identified in both ASD-affected brothers in a multiplex family (Chahrour et al., 2012; Cirnigliaro et al., 2023).

Molecular Function

This gene is a member of the MAGEC gene family. The members of this family are not expressed in normal tissues, except for testis, and are expressed in tumors of various histological types. The MAGEC genes are clustered on chromosome Xq26-q27.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD
Support
Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders.
ASD
Support
Whole-exome sequencing and homozygosity analysis implicate depolarization-regulated neuronal genes in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1427R001 
 missense_variant 
 c.880C>G 
 p.Leu294Val 
 Unknown 
  
 Extended multiplex 
 GEN1427R002 
 stop_gained 
 c.577C>T 
 p.Gln193Ter 
 Unknown 
  
 Unknown 
 GEN1427R003 
 stop_gained 
 c.577C>T 
 p.Gln193Ter 
 Unknown 
  
 Unknown 
 GEN1427R004 
 frameshift_variant 
 c.653_656dup 
 p.Gly220HisfsTer13 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion
 1
 
X
Duplication
 1
 
X
Deletion-Duplication
 21
 
X
Deletion
 2
 
X
Deletion
 1
 
X
Deletion
 1
 
X
Deletion-Duplication
 1
 
X
Deletion
 2
 
X
Duplication
 4
 
X
Deletion-Duplication
 1
 
X
Deletion-Duplication
 9
 

No Animal Model Data Available

No PIN Data Available
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