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Relevance to Autism

LRRC7-knockout mice show changes in the protein content of the postsynaptic density and exhibit impaired short-term and spatial memory, increased anxiety and aggression, and abnormal motor behavior (Carlisle et al., 2011). De novo loss-of-function (LoF) variant in LRRC7 have also been identified in ASD probands (Yuen et al., 2015; Zhou et al., 2022). More recently, Willim et al., 2024 identified 33 individuals (one of them previously described) with a dominant neurodevelopmental disorder caused by heterozygous missense or loss-of-function variants in LRRC7 that was characterized by intellectual disability, autism, ADHD, aggression and, in several cases, hyperphagia-associated obesity. Moreover, Willim et al., 2024 found that a variant in the PDZ domain of LRRC7 interfered with synaptic targeting of Densin-180 (the protein encoded by LRRC7) in primary cultured neurons, while variants in the LRR domain impaired binding of Densin-180 to newly identified candidate binding partners.

Molecular Function

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Deletion of densin-180 results in abnormal behaviors associated with mental illness and reduces mGluR5 and DISC1 in the postsynaptic density fraction.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Exome Pool-Seq in neurodevelopmental disorders.
ID, epilepsy/seizures
Support
Whole-genome sequencing of quartet families with autism spectrum disorder.
ASD
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Recent Recommendation
Variants in LRRC7 lead to intellectual disability, autism, aggression and abnormal eating behaviors
DD, ID
ASD or autistic behavior, ADHD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN417R001 
 frameshift_variant 
 c.358_361del 
 p.Lys120ValfsTer2 
 De novo 
  
 Multiplex 
 GEN417R002 
 stop_gained 
 c.3516T>G 
 p.Tyr1172Ter 
 De novo 
  
  
 GEN417R003 
 missense_variant 
 c.2860C>A 
 p.Pro954Thr 
 Unknown 
  
  
 GEN417R004 
 frameshift_variant 
 c.3093dup 
 p.Met1032TyrfsTer12 
 De novo 
  
  
 GEN417R005 
 stop_gained 
 C>T 
 p.Gln1375Ter 
 Unknown 
  
 Unknown 
 GEN417R006 
 stop_gained 
 C>T 
 p.Gln406Ter 
 Unknown 
  
 Simplex 
 GEN417R007 
 splice_site_variant 
 c.2107+2T>C 
 p.? 
 Unknown 
 Not maternal 
 Simplex 
 GEN417R008 
 splice_site_variant 
 c.2108-2A>G 
 p.? 
 Unknown 
 Not maternal 
 Simplex 
 GEN417R009 
 splice_site_variant 
 c.2288+2T>C 
 p.? 
 Familial 
 Paternal 
 Multiplex 
 GEN417R010 
 stop_gained 
 TC>T 
 p.Leu973Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN417R011 
 stop_gained 
 C>G 
 p.Tyr1181Ter 
 Familial 
 Maternal 
 Simplex 
 GEN417R012 
 stop_gained 
 T>TA 
 p.Tyr1248Ter 
 De novo 
  
 Simplex 
 GEN417R013 
 frameshift_variant 
 A>AC 
 p.Asn1377ThrfsTer13 
 Familial 
 Paternal 
 Simplex 
 GEN417R014 
 missense_variant 
 c.194T>C 
 p.Leu65Ser 
 De novo 
  
 Simplex 
 GEN417R015 
 missense_variant 
 c.281A>G 
 p.Asn94Ser 
 De novo 
  
 Simplex 
 GEN417R016 
 missense_variant 
 c.281A>G 
 p.Asn94Ser 
 De novo 
  
 Simplex 
 GEN417R017 
 missense_variant 
 c.317G>A 
 p.Cys106Tyr 
 De novo 
  
 Multiplex 
 GEN417R018 
 missense_variant 
 c.577G>C 
 p.Ala193Pro 
 Familial 
 Paternal 
 Simplex 
 GEN417R019 
 missense_variant 
 c.661C>A 
 p.Leu221Met 
 De novo 
  
 Simplex 
 GEN417R020 
 missense_variant 
 c.887T>C 
 p.Leu296Pro 
 De novo 
  
 Simplex 
 GEN417R021 
 splice_site_variant 
 c.1995+1G>A 
 p.? 
 Unknown 
 Not maternal 
 Multiplex 
 GEN417R022 
 stop_gained 
 c.2242C>T 
 p.Gln748Ter 
 Unknown 
 Not maternal 
 Multiplex 
 GEN417R023 
 frameshift_variant 
 c.2917dupC 
 p.Leu973ProfsTer8 
 Unknown 
 Not maternal 
 Multiplex 
 GEN417R024 
 stop_gained 
 c.3052C>T 
 p.Arg1018Ter 
 De novo 
  
 Simplex 
 GEN417R025 
 frameshift_variant 
 c.3192dupA 
 p.Val1065SerfsTer5 
 De novo 
  
 Simplex 
 GEN417R026 
 stop_gained 
 c.3604T>G 
 p.Gln1202Ter 
 Unknown 
  
 Multiplex 
 GEN417R027 
 stop_gained 
 c.3630T>G 
 p.Tyr1210Ter 
 De novo 
  
 Simplex 
 GEN417R028 
 stop_gained 
 c.4443T>G 
 p.Tyr1481Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN417R029 
 missense_variant 
 c.4700T>A 
 p.Leu1567Gln 
 Familial 
 Paternal 
  
 GEN417R030 
 frameshift_variant 
 c.2374del 
 p.Arg792ValfsTer7 
 Familial 
 Maternal 
 Multiplex 
 GEN417R031 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN417R032 
 splice_site_variant 
 c.168+1G>A 
 p.? 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 33
 
1
Deletion
 1
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Duplication
 1
 

Model Summary

Densin influences the function of mGluRs and CaMKII at synapses and contributes to localization of mGluR5 and DISC1 in the PSD fraction.

References

Type
Title
Author, Year
Primary
Deletion of densin-180 results in abnormal behaviors associated with mental illness and reduces mGluR5 and DISC1 in the postsynaptic density fraction.

M_LRRC7_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted homologous recombination mediated deletion of exon 3 of Lrrc7 gene containing the transcriptional start site.
Allele Type: Targeted (Knock Out)
Strain of Origin: Not Specified
Genetic Background: C57BL/6
ES Cell Line: CJ7
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_LRRC7_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Increased
Description: Increased locomotor activity indicative of hyperactivity demonstrated by high-energy behavior
Exp Paradigm: Automated behavior analysis in novel environment
 Home cage behavior
 Unreported
Clasping reflex1
Increased
Description: Increased clasping behavior observation
Exp Paradigm: Observations when suspended by tail
 General observations
 Unreported
Dendritic architecture: spine density1
Abnormal
Description: Abnormal spine morphology indicated by elongated necks, increased proportion of muschroom spines, decreased proportion of stubby spines and no change in number of spines
Exp Paradigm: 3-d image reconstruction of confocal images of labeled pyramidal cell dendrites
 Confocal microscopy
 3-6 months
Synaptic plasticity: ltd1
Decreased
Description: Decreased low-frequency stimulation and dhpg induced forms of long term depression
Exp Paradigm: Whole cell recordings after a 15 min train of 1 hz stimulation
 Whole-cell patch clamp
 Unreported
Sensorimotor gating1
Increased
Description: Increased sensorimotor gating indicative of a deficit of prepulse inhibition
Exp Paradigm: Acoustic startle reflex
 Prepulse inhibition
 11-15 weeks
Nest building behavior1
Decreased
Description: Decreased nest building behavior
Exp Paradigm: Male mice: observation of nest building
 Nest building assay
 Unreported
Aggression1
Increased
Description: Increased aggressive behavior
Exp Paradigm: Male mice: observation of aggressive behavior
 Home cage behavior
 Unreported
Size/growth1
Decreased
Description: Decreased body weight
Exp Paradigm: General observations
 General observations
 P14-p42
Anxiety1
Increased
Description: Increased anxiety levels indicated by small fraction time spent in center quadrant
Exp Paradigm: Open field test
 Open field test
 Unreported
Object recognition memory1
Decreased
Description: Decreased hippocampus independent form of short term memory
Exp Paradigm: One-trial object recognition test
 Novel object recognition test
 Unreported
Spatial working memory1
Decreased
Description: Decreased spatial memory
Exp Paradigm: One trial object place recognition task
 Object-place recognition test
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased expression of lrrc7 protein
Exp Paradigm: Lrrc7 protein expression
 Western blot
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased amounts of disc1 and mglur5 in psd fractions
Exp Paradigm: Disc1 and mglur5 protein levels
 Immunohistochemistry
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased amounts of alpha-actinin in psd fractions and total brain
Exp Paradigm: Core psd protein levels
 Immunohistochemistry
 Unreported
General characteristics1
 No change
 General observations
 Unreported
Size/growth1
 No change
 General observations
 11 weeks
Astrogliosis1
 No change
 Immunohistochemistry
 Unreported
Protein expression level evidence1
 No change
 Immunohistochemistry
 Unreported
Protein expression level evidence1
 No change
 Immunohistochemistry
 Unreported
Motor coordination and balance1
 No change
 Balance beam test
 Unreported
Motor coordination and balance1
 No change
 Accelerating rotarod test
 Unreported
Brain morphology1
 No change
 Histology
 8-12 weeks
Synaptic plasticity: hippocampal ltp1
 No change
 Whole-cell patch clamp
 Unreported
Synaptic transmission1
 No change
 Whole-cell patch clamp
 Unreported
Synaptic transmission1
 No change
 Whole-cell patch clamp
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Maternal behavior, Physiological parameters, Repetitive behavior, Seizure

 

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