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Relevance to Autism

Three affected children from two consanguineous families carrying homozygous loss-of-function mutations in the LNPK gene presented with a neurodevelopmental syndrome characterized by developmental delay (including delayed social development), intellectual disability, hypotonia, epilepsy and corpus callosum hypoplasia; in addition, two of the three cases also presented with autistic features (Breuss et al., 2018).

Molecular Function

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutations in LNPK, Encoding the Endoplasmic Reticulum Junction Stabilizer Lunapark, Cause a Recessive Neurodevelopmental Syndrome.
DD, ID, epilepsy/seizures
Autistic features
Support
DD, ID, epilepsy/seizures
ASD
Recent Recommendation

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1026R001a 
 frameshift_variant 
 c.727del 
 p.Ser243LeufsTer68 
 Familial 
 Both parents 
 Multiplex 
 GEN1026R002a 
 stop_gained 
 c.751C>T 
 p.Gln251Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1026R003a 
 intergenic_variant 
 C>T 
  
 Familial 
 Both parents 
  
 GEN1026R004a 
 stop_gained 
 c.19C>T 
 p.Arg7Ter 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R005a 
 splice_site_variant 
 c.-62-1G>T 
  
 Familial 
 Maternal 
 Simplex 
  et al.  
 GEN1026R006a 
 stop_gained 
 c.428C>A 
 p.Ser143Ter 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R007a 
 stop_gained 
 c.428C>A 
 p.Ser143Ter 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R008a 
 frameshift_variant 
 c.359_362del 
 p.Leu120GlnfsTer14 
 Familial 
 Both parents 
 Multiplex 
  et al.  
 GEN1026R009a 
 frameshift_variant 
 c.402_405del 
 p.Leu134PhefsTer24 
 Familial 
 Both parents 
 Multiplex 
  et al.  
 GEN1026R010a 
 frameshift_variant 
 c.726del 
 p.Pro243LeufsTer2 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R011a 
 splice_site_variant 
 c.1252+1G>C 
  
 Familial 
 Both parents 
 Multiplex 
  et al.  
 GEN1026R012a 
 frameshift_variant 
 c.355dup 
 p.Ile119AsnfsTer3 
 Unknown 
  
 Simplex 
  et al.  
 GEN1026R013a 
 stop_gained 
 c.889C>T 
 p.Arg297Ter 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R014a 
 frameshift_variant 
 c.431dup 
 p.Lys145GlufsTer6 
 Familial 
 Both parents 
 Simplex 
  et al.  
 GEN1026R015a 
 stop_gained 
 c.757C>T 
 p.Arg253Ter 
 Familial 
 Both parents 
 Multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion
 1
 
2
Deletion-Duplication
 16
 
2
Deletion
 3
 
2
Deletion
 2
 
2
Deletion
 1
 
2
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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