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Relevance to Autism

Genetic association has been found between the LMX1B gene and autism in a Caucasian AGRE cohort (Thanseem et al., 2011), with two SNPs (rs10732392 and rs12336217) showing moderate association with autism with p values of 0.018 and 0.022, respectively, in a transmission disequilibrium test. LMX1B transcripts were found to be significantly lower in the anterior cingulate gyrus region of autism patients compared with controls (p=0.049) in this report.

Molecular Function

This gene encodes a member of the LIM-homeodomain family of proteins containing two N-terminal zinc-binding LIM domains, 1 homeodomain, and a C-terminal glutamine-rich domain. It functions as a transcription factor, and is essential for the normal development of dorsal limb structures, the glomerular basement membrane, the anterior segment of the eye, and dopaminergic and serotonergic neurons.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Association of transcription factor gene LMX1B with autism.
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Whole-genome sequencing identifies novel genes for autism in Chinese trios
ASD
Support
Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
DD
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN272R001 
 splice_site_variant 
 c.1052-2A>C 
  
 De novo 
  
 Simplex 
 GEN272R002 
 synonymous_variant 
 c.453C>T 
 p.Arg151= 
 De novo 
  
  
 GEN272R003 
 missense_variant 
 c.706G>C 
 p.Ala236Pro 
 Unknown 
  
  
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 
9
Deletion
 1
 
9
Duplication
 1
 
9
Deletion-Duplication
 6
 
9
Deletion
 4
 
9
Duplication
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ACTB actin, beta 60 P60709 IP; LC-MS/MS
Huttlin EL , et al. 2015
APP amyloid beta (A4) precursor protein 351 P05067 ProtoArray
Olh J , et al. 2011
IDI2 Isopentenyl-diphosphate delta-isomerase 2 91734 Q9BXS1 IP; LC-MS/MS
Huttlin EL , et al. 2015
IL6 interleukin 6 (interferon, beta 2) 3569 B4DVM1 ChIP; Luciferase reporter assay
Rascle A , et al. 2008
IL8 interleukin 8 3576 P10145 ChIP; Luciferase reporter assay
Rascle A , et al. 2008
LDB1 LIM domain binding 1 8861 Q86U70 Y2H
Marini M , et al. 2003
LDB1 LIM domain binding 1 8861 Q86U70 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
LDB1 LIM domain binding 1 8861 Q86U70 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAB21L1 Protein mab-21-like 1 4081 Q13394 IP; LC-MS/MS
Huttlin EL , et al. 2015
MEIS1 Meis homeobox 1 4211 O00470 IP; LC-MS/MS
Huttlin EL , et al. 2015
MEIS2 Meis homeobox 2 4212 B7Z6F6 IP; LC-MS/MS
Huttlin EL , et al. 2015
NPHS2 nephrosis 2, idiopathic, steroid-resistant (podocin) 7827 Q9NP85 Luciferase reporter assay; EMSA
Harendza S , et al. 2009
PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative) 25973 Q7L3T8 IP; LC-MS/MS
Huttlin EL , et al. 2015
PAX2 paired box 2 5076 Q02962 Y2H; IP/WB
Marini M , et al. 2005
PBX1 pre-B-cell leukemia homeobox 1 5087 P40424 IP; LC-MS/MS
Huttlin EL , et al. 2015
PBX2 pre-B-cell leukemia homeobox 2 5089 P40425 IP; LC-MS/MS
Huttlin EL , et al. 2015
PBX3 pre-B-cell leukemia homeobox 3 5090 E9PB27 IP; LC-MS/MS
Huttlin EL , et al. 2015
PKNOX2 PBX/knotted 1 homeobox 2 63876 Q96KN3 IP; LC-MS/MS
Huttlin EL , et al. 2015
POTEF POTE ankyrin domain family member F 728378 A5A3E0 IP; LC-MS/MS
Huttlin EL , et al. 2015
PSPC1 paraspeckle component 1 55269 B4DWI8 Affinity chromatography; MS; IP/WB
Hoekstra EJ , et al. 2013
SFPQ splicing factor proline/glutamine-rich 6421 P23246 IP/WB
Hoekstra EJ , et al. 2013
SSBP2 single-stranded DNA binding protein 2 23635 P81877 IP; LC-MS/MS
Huttlin EL , et al. 2015
SSBP3 single stranded DNA binding protein 3 23648 Q9BWW4 M2H
Ravasi T , et al. 2010
SSBP3 single stranded DNA binding protein 3 23648 Q9BWW4 IP; LC-MS/MS
Huttlin EL , et al. 2015
SSBP4 single stranded DNA binding protein 4 170463 Q9BWG4 IP; LC-MS/MS
Huttlin EL , et al. 2015
TCF3 transcription factor 3 6929 P15923 Y2H; Luciferase reporter assay; GST
Johnson JD , et al. 1997
ZFYVE20 zinc finger, FYVE domain containing 20 64145 Q9H1K0 IP; LC-MS/MS
Huttlin EL , et al. 2015

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