HELP     Sign In
Search

Relevance to Autism

Chettle et al., 2024 reported a case series of seven unrelated probands with de novo heterozygous loss of function or missense variants in the LARP1 gene who presented with a variable neurodevelopmental phenotype that included developmental delay, intellectual disability, hypotonia, and/or behavioral abnormalities including autism spectrum disorder, which was reported in four probands; subsequent studies using immortalized lymphoblasts from a proband with a LARP1 loss of function variant demonstrated reduced LARP1 mRNA and protein levels resulting in reduced rates of aerobic respiration and glycolysis in proband-derived cells. De novo missense variants in the LARP1 gene have also been identified in ASD probands from a cohort of 30 Japanese probands with sporadic ASD, the Autism Sequencing Consortium, and the MSSNG cohort (Hashimoto et al., 2016; Satterstrom et al., 2020; Zhou et al., 2022).

Molecular Function

Enables eukaryotic initiation factor 4E binding activity; nucleic acid binding activity; and ribosomal small subunit binding activity. Involved in several processes, including TORC1 signaling; cellular response to rapamycin; and posttranscriptional regulation of gene expression. Located in cytoplasmic stress granule. Colocalizes with TORC1 complex and polysomal ribosome.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
LARP1 haploinsufficiency is associated with an autosomal dominant neurodevelopmental disorder
DD, ID
ASD, ADHD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Whole-exome sequencing and neurite outgrowth analysis in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1468R001 
 frameshift_variant 
 c.2164dup 
 p.Thr722AsnfsTer5 
 De novo 
  
  
 GEN1468R002 
 missense_variant 
 c.1267G>C 
 p.Asp423His 
 De novo 
  
  
 GEN1468R003 
 missense_variant 
 c.1378G>C 
 p.Ala460Pro 
 De novo 
  
  
 GEN1468R004 
 missense_variant 
 c.2119G>A 
 p.Glu707Lys 
 De novo 
  
  
 GEN1468R005 
 missense_variant 
 c.2287A>T 
 p.Ile763Phe 
 De novo 
  
  
 GEN1468R006a 
 missense_variant 
 c.2379C>G 
 p.Asp793Glu 
 De novo 
  
  
 GEN1468R006b 
 missense_variant 
 c.2456A>G 
 p.Lys819Arg 
 De novo 
  
  
 GEN1468R007 
 missense_variant 
 c.1673T>C 
 p.Ile558Thr 
 De novo 
  
  
 GEN1468R008 
 missense_variant 
 c.2858T>G 
 p.Met953Arg 
 De novo 
  
 Simplex 
 GEN1468R009 
 missense_variant 
 c.935A>G 
 p.Asn312Ser 
 De novo 
  
  
 GEN1468R010 
 missense_variant 
 c.1976C>T 
 p.Pro659Leu 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 6
 
5
Deletion
 1
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.