Summary Statistics:
ASD Reports: 9
Recent Reports: 0
Annotated variants: 18
Associated CNVs: 2
Evidence score: 2
Gene Score: S
Relevance to Autism
Biallelic variants in the KPTN gene were found to cosegregate with the disease phenotype in nine family members from four nuclear families from the Amish community of Ohio presenting with an inherited variable form of neurodevelopmental delay (most consistent features were global developmental delay, macrocephaly with frontal bossing, high levels of anxiety, and some features suggestive of pervasive developmental disorder, such as stereotypies and/or repetitive speech) in Baple et al., 2013. A homozygous frameshift variant in the KPTN gene was identified in two adult siblings from Estonia presenting with moderate intellectual disability and macrocephaly in Pajusalu et al., 2015; the male sibling also presented with behavioral problems, including autistic features.
Molecular Function
This gene encodes a filamentous-actin-associated protein, which is involved in actin dynamics and plays an important role in neuromorphogenesis. This protein is part of the KICSTOR protein complex that localizes to lysosomes. Mutations in this gene result in an autosomal recessive form of intellectual disability.
References
Primary
Mutations in KPTN cause macrocephaly, neurodevelopmental delay, and seizures.
DD, ID
Epilepsy/seizures, autistic features
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Autosomal recessive intellectual disorder-41
Support
Novel homozygous mutation in KPTN gene causing a familial intellectual disability-macrocephaly syndrome.
ID, macrocephaly
Epilepsy/seizures, autistic features
Support
DD, ID, epilepsy/seizures
Autistic features, stereotypy
Support
Integrating de novo and inherited variants in 42
ASD
Support
Pathogenic variants in KPTN, a rare cause of macrocephaly and intellectual disability
Autosomal recessive mental retardation-41
Support
Pathogenic variants in KPTN gene identified by clinical whole-genome sequencing
Autosomal recessive mental retardation-41
ASD
Support
Clinical genome sequencing in an unbiased pediatric cohort.
Autosomal recessive mental retardation-41 (MRT41)
ASD, ID, epilepsy/seizures, macrocephaly
GEN586R001a
stop_gained
c.776C>A
p.Ser259Ter
Familial
Both parents
Multiplex
GEN586R002a
stop_gained
c.608C>A
p.Ser203Ter
Familial
Both parents
Simplex
GEN586R003a
inframe_insertion
c.546_547insTCTGCAGATGTGGTCGGT
p.Val182_Leu183insSerAlaAspValValGly
Familial
Paternal
Multiplex
GEN586R003b
stop_gained
c.776C>A
p.Ser259Ter
Familial
Maternal
Multiplex
GEN586R004a
inframe_insertion
c.546_547insTCTGCAGATGTGGTCGGT
p.Val182_Leu183insSerAlaAspValValGly
Familial
Paternal
Multiplex
GEN586R004b
stop_gained
c.776C>A
p.Ser259Ter
Familial
Maternal
Multiplex
GEN586R005a
frameshift_variant
c.497dup
p.Ser167GlufsTer50
Familial
Both parents
Multiplex
GEN586R006
synonymous_variant
c.279G>T
p.Arg93=
De novo
Simplex
GEN586R007a
inframe_insertion
c.546_547insTCTGCAGATGTGGTCGGT
p.Val182_Leu183insSerAlaAspValValGly
Unknown
GEN586R007b
splice_site_variant
c.227-79G>A
Unknown
GEN586R008a
splice_site_variant
c.227-79G>A
Familial
Maternal
Simplex
GEN586R008b
inframe_insertion
c.546_547insTCTGCAGATGTGGTCGGT
p.Val182_Leu183insSerAlaAspValValGly
Familial
Paternal
Simplex
GEN586R009a
frameshift_variant
c.429_430insTA
p.Ser144Ter
Familial
Both parents
Multiplex
GEN586R010
missense_variant
c.1168G>A
p.Val390Met
De novo
GEN586R011a
frameshift_variant
c.429_430insTA
p.Ser144Ter
Unknown
Simplex
GEN586R011b
inframe_insertion
c.546_547insTCTGCAGATGTGGTCGGT
p.Val182_Leu183insSerAlaAspValValGly
Unknown
Simplex
GEN586R012a
splice_site_variant
c.431+1G>A
Familial
Both parents
Simplex
GEN586R013a
splice_site_variant
c.431+1G>A
Familial
Both parents
Multiplex
No Common Variants Available
19
Deletion-Duplication
13
No Animal Model Data Available
Summary Statistics:
Total Interactions: 30
Total Publications: 3
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
AMD1
adenosylmethionine decarboxylase 1
262
P17707
IP; LC-MS/MS
Huttlin EL , et al. 2015
BTN2A1
butyrophilin, subfamily 2, member A1
11120
Q7KYR7
IP; LC-MS/MS
Huttlin EL , et al. 2015
C10ORF47
proline and serine-rich protein 2
254427
Q86WR7
IP; LC-MS/MS
Huttlin EL , et al. 2015
C12ORF66
chromosome 12 open reading frame 66
144577
Q96MD2
IP; LC-MS/MS
Huttlin EL , et al. 2015
C7ORF60
chromosome 7 open reading frame 60
154743
Q1RMZ1
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
DPH1
DPH1 homolog (S. cerevisiae)
1801
B3KQW7
IP; LC-MS/MS
Huttlin EL , et al. 2015
ELP2
elongator acetyltransferase complex subunit 2
55250
Q6IA86
IP; LC-MS/MS
Huttlin EL , et al. 2015
ELP3
elongator acetyltransferase complex subunit 3
55140
Q9H9T3
IP; LC-MS/MS
Huttlin EL , et al. 2015
FMN2
formin 2
56776
Q9HBL1
IP; LC-MS/MS
Huttlin EL , et al. 2015
GTSE1
G-2 and S-phase expressed 1
51512
Q9NYZ3
IP; LC-MS/MS
Huttlin EL , et al. 2015
HSPB9
Heat shock protein beta-9
94086
Q9BQS6
IP; LC-MS/MS
Huttlin EL , et al. 2015
ITFG2
Integrin-alpha FG-GAP repeat-containing protein 2
55846
Q969R8
IP; LC-MS/MS
Huttlin EL , et al. 2015
KIAA0467
seizure threshold 2 homolog (mouse)
23334
Q5T011
IP; LC-MS/MS
Huttlin EL , et al. 2015
KIF5B
kinesin family member 5B
3799
P33176
IP; LC-MS/MS
Huttlin EL , et al. 2015
KLC1
kinesin light chain 1
3831
Q07866
IP; LC-MS/MS
Huttlin EL , et al. 2015
KLC2
kinesin light chain 2
64837
Q9H0B6
IP; LC-MS/MS
Huttlin EL , et al. 2015
KLC4
kinesin light chain 4
89953
Q9NSK0
IP; LC-MS/MS
Huttlin EL , et al. 2015
KLHL15
kelch-like family member 15
80311
Q96M94
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAVS
mitochondrial antiviral signaling protein
57506
Q7Z434
IP; LC-MS/MS
Huttlin EL , et al. 2015
NFRKB
nuclear factor related to kappaB binding protein
4798
Q6P4R8
IP; LC-MS/MS
Huttlin EL , et al. 2015
RBM33
RNA binding motif protein 33
155435
Q96EV2
IP; LC-MS/MS
Huttlin EL , et al. 2015
RNASEH2A
ribonuclease H2, subunit A
10535
O75792
IP; LC-MS/MS
Huttlin EL , et al. 2015
TES
testis derived transcript (3 LIM domains)
26136
A4D0U5
IP; LC-MS/MS
Huttlin EL , et al. 2015
TMCO4
Transmembrane and coiled-coil domain-containing protein 4
255104
Q5TGY1
IP; LC-MS/MS
Huttlin EL , et al. 2015
TSPAN7
tetraspanin 7
7102
P41732
LC/ESI/MS/MS
Ewing RM , et al. 2007
VWCE
von Willebrand factor C and EGF domain-containing protein
220001
Q96DN2
IP; LC-MS/MS
Huttlin EL , et al. 2015