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Relevance to Autism

An intronic SNP in the KIZ gene (rs6047270) was found to be significantly associated with ASD (P-value 8.0E-08) in a genome-wide association meta-analysis of 18,381 ASD cases and 27,969 controls from iPSYCH and the Psychiatric Genomic Consortium (PGC) in Grove et al., 2019. A transcriptome-wide association study (TWAS) of 7,805 ASD proband-parent trios, which was subsequently replicated using 35,740 independent samples, using eQTL and splicing quantitative trait loci in 12 brain tissues from GTEx and the CommonMind Consortium (CMC) in Huang et al., 2021 identified KIZ as a gene whose transcriptome-wide association with ASD remained significant after a stringent Bonferroni correction for all genes and all tissues in the analysis (meta-analysis P-value 1.88E-07 in CMC DLPFC tissue).

Molecular Function

The protein encoded by this gene localizes to centrosomes, strengthening and stabilizing the pericentriolar region prior to spindle formation. The encoded protein usually remains with the mother centrosome after centrosomal duplication.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Identification of common genetic risk variants for autism spectrum disorder.
ASD
Support
Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder
ASD

Rare

No Rare Variants Available

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1240C001 
 intron_variant 
 rs6047270 
 c.7-3994T>C;c.6+9412T>C;c.169-3994T>C;c.316-3994T>C;c.-28+324T>C; 
  
 ASD cohort: 18,381 cases and 27,969 controls from iPSYCH and the Psychiatric Genomic Consortium (PGC) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Deletion
 1
 
20
Duplication
 1
 
20
Duplication
 1
 
20
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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