A missense mutation in the KDM5C gene was detected in a nondysmorphic patient with developmental delay and autism spectrum disorder (Adegbola et al., 2008).
Molecular Function
This gene is a member of the SMCY homolog family and encodes a protein with one ARID domain, one JmjC domain, one JmjN domain and two PHD-type zinc fingers. The DNA-binding motifs suggest this protein is involved in the regulation of transcription and chromatin remodeling. Mutations in this gene have been associated with X-linked cognitive disability.
External Links
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A novel mutation in JARID1C/SMCX in a patient with autism spectrum disorder (ASD).
Kdm5c is associated with X-linked syndromic Claes-Jensen type intellectual developmental disorder. The hemizygous male mouse model shows complete ablation of the gene, while the heterozygous female shows a reduction of half of the level of expression, compared to sex-matched wildtypes. In the female mouse model this reduction results in differential expressed genes, some of which are also differentially expressed in the hemizygous male model, while others are uniquely differentially expressed in the female heterozygous model. The female heterozygous mice show increased foot shock sensitivity and decreased social approach. A double heterozygote mutant female mouse of Kdm5c and Kmt2a also shows decreased social approach, in addition to decreased contextual memory in the fear conditioning paradigm and decreased social dominance in the tube test of social dominance.
Model Type:
Genetic
Model Genotype:
Hemizygous
Mutation:
Kdm5c knockout allele was generated through Cre-mediated deletion of exons 11 and 12 in a conditional-ready construct (MGI:6163735). Kdm5c knockout was maintained in a mixed background of C57BL/6J and 129S1/SvImJ.
Allele Type: Knockout
Strain of Origin: 129; 129S4/SvJae-Tg(Prm-cre)70Og
Genetic Background: C57BL/6J; 129S1/SvImJ
ES Cell Line: Not specified
Mutant ES Cell Line: Model Source: Yang Shi lab
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Kdm5c knockout allele was generated through Cre-mediated deletion of exons 11 and 12 in a conditional-ready construct (MGI:6163735). Kdm5c knockout was maintained in a mixed background of C57BL/6J and 129S1/SvImJ.
Allele Type: Knockout
Strain of Origin: 129
Genetic Background: C57BL/6J; 129S1/SvImJ
ES Cell Line: Not specified
Mutant ES Cell Line: Model Source: Yang Shi lab
Model Type:
Genetic
Model Genotype:
Heterozygous; Heterozygous
Mutation:
Double knockout F1 hybrids were generated by crossing female mice carrying the Kdm5c knockout allele (MGI:6163735) on a congenic C57BL/6J background with mice heterozygous for loss of Kmt2a (MGI:3849323) on a congenic 129S1/SvImJ background.
Allele Type: Knockout
Strain of Origin: 129; 129S4/SvJae-Tg(Prm-cre)70Og
Genetic Background: C57BL/6J; 129S1/SvImJ
ES Cell Line: Not specified; PC3
Mutant ES Cell Line: Model Source: Yang Shi lab; Hugh Brady lab
Description: There is an absence of RNA-seq reads of exons 11 and 12 in brain tissue from hemizygous males compared to wildtype males.
Exp Paradigm: cortex and hippocampus
Description: The gene with the greatest level of differential expression in Kdm5c hemizygous males is Gap junction protein, beta 1 (Gjb1) (Log2FC = 1.96, q = 1.92 Ã? 10â??82). Gjb1 encodes connexin-32, whose expression increases across postnatal cortical development to form gap junctions in oligodendrocytes and neurons and is implicated in epilepsy. Another gene with a significant level of differential expression is cyclin-dependent kinase inhibitor 1c (Cdkn1c) (Log2FC = 0.89, q = 8.02 Ã? 10â??20). Cdkn1c is a paternally imprinted gene involved in neocortical development and aggressive behavior. Pnmt and Gal genes are significantly upregulated in the hemizygous Kdm5c males but not in the heterozygous females.
Exp Paradigm: cortex and hippocampus; Gjb1, Cdkn1c, Pnmt, Gal
Description: Kdm5c hemizygous males showed 708 genes upregulated and 371 genes downregulated compared to wildtype males. Most differentially expressed genes are upregulated in the mutants, consistent with Kdm5c being a transcriptional repressor.
Exp Paradigm: cortex and hippocampus
Description: Kdm5c heterozygous female mice show increased foot shock sensitivity, measured by maximum velocity during the acquisition phase of the fear conditioning paradigm. No change in average velocity was observed.
Description: Kdm5c heterozygous female mice show an exploratory preference for the non-social chamber with a toy mouse over the social chamber with a stranger mouse, contrary to wildtype mice.
Description: There is approximately a half level of expression of RNA-seq reads of exons 11 and 12 in brain tissue from hemizygous females compared to wildtype females.
Exp Paradigm: cortex and hippocampus
Description: The gene with the greatest level of differential expression in Kdm5c heterozygous females is Gap junction protein, beta 1 (Gjb1) (Log2FC = 1.17, q = 4.01 Ã? 10â??37). Gjb1 encodes connexin-32, whose expression increases across postnatal cortical development to form gap junctions in oligodendrocytes and neurons and is implicated in epilepsy. Another gene with a significant level of differential expression is cyclin-dependent kinase inhibitor 1c (Cdkn1c) (Log2FC = 0.472, q = 1.48 Ã? 10â??5). Cdkn1c is a paternally imprinted gene involved in neocortical development and aggressive behavior. Mdk and Jpx genes are significantly upregulated in the heterozygous Kdm5c females but not in the hemizygous males.
Exp Paradigm: cortex and hippocampus; Gjb1, Cdkn1c, Jpx, Mdk
Description: Kdm5c heterozygous females showed 122 genes upregulated and 14 genes downregulated compared to wildtype females. Most differentially expressed genes are upregulated in the mutants, consistent with Kdm5c being a transcriptional repressor.
Exp Paradigm: cortex and hippocampus
Description: Double mutant female mice show no exploratory preference for the social chamber with a stranger mouse over the non-social chamber with a toy mouse, whereas wildtype female mice show preference for the social chamber.
Cued or contextual fear conditioning: memory of context1
Decreased
Description: Double mutant female mice show decreased freezing level in re-exposure to foreground context after fear conditioning compared to wildtype female mice.