HELP     Sign In
Search

Relevance to Autism

Overexpression of the KCTD13 gene in zebrafish resulted in induction of the microcephaly phenotype associated with 16p11.2 duplications, whereas suppression of KCTD13 expression resulted in the macrocephaly phenotype associated with 16p11.2 deletions (Golzio et al., 2012). An autistic proband with a de novo deletion including exons 3-5 of the KCTD13 gene was also identified in this report.

Molecular Function

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex required for synaptic transmission (PMID 19782033). The BCR(KCTD13) E3 ubiquitin ligase complex mediates the ubiquitination of RHOA, leading to its degradation by the proteasome (PMID 19782033) Degradation of RHOA regulates the actin cytoskeleton and promotes synaptic transmission.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant.
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Identification of rare variants in KCTD13 at the schizophrenia risk locus 16p11.2.
SCZ
Support
Epilepsy/seizures
Support
Regulation of purine metabolism connects KCTD13 to a metabolic disorder with autistic features
ASD
SCZ
Recent Recommendation
CRISPR/Cas9-mediated Knockout of the Neuropsychiatric Risk Gene KCTD13 Causes Developmental Deficits in Human Cortical Neurons Derived from Induced...
Recent Recommendation
Kctd13 deletion reduces synaptic transmission via increased RhoA.
Recent Recommendation
A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.
Recent Recommendation
Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN363R001 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN363R002 
 synonymous_variant 
 c.6G>T 
 p.Ser2= 
 Unknown 
  
  
 GEN363R003 
 missense_variant 
 c.405G>A 
 p.Leu135= 
 Unknown 
 Not maternal 
 Multiplex 
 GEN363R004 
 missense_variant 
 c.256A>C 
 p.Ile86Leu 
 Familial 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion-Duplication
 139
  construct
16
Duplication
 4
 
16
Deletion
 1
 
16
Deletion
 1
 
16
Duplication
 15
 

Model Summary

Ubiquitous knockdown of CG10465 results in decreased climbing behavior, increased occurrence of seizures, but no change in pupal or larval mortality. Tissue-specific knockdown results in abnormal eye morphogenesis, increased cell proliferation, and decreased gene expression. These effects are ameliorated or restored by simultaneous knockdown of other neurodevelopmental genes.

References

Type
Title
Author, Year
Primary
Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster.

F_CG10465_1_KD_25C

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Ubiquitous knockdown of CG10465 was generated using RNAi transgenic line on medium at 25C degrees.
Allele Type: Knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: VDRC 107131

F_CG10465_2_KD_RT

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Ubiquitous knockdown of CG10465 was generated using RNAi transgenic line on medium at room temperature.
Allele Type: Knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: VDRC 107131

F_CG10465_3_CKD_EYE

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Eye-specific knockdown of CG10465 was generated using RNAi transgenic line with the GMR-Gal4 driver on medium at 30C degrees.
Allele Type: Conditional knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: VDRC 107131

F_CG10465_4_CKD_WING

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Wing-specific knockdown of CG10465 was generated using RNAi transgenic line with the MS1096-Gal4 driver on medium at 25C degrees.
Allele Type: Conditional knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: VDRC 107131

F_CG10465_5_CKD_NEURON-25C

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Neuron-specific knockdown of CG10465 was generated using RNAi transgenic line with the Elav-Gal4 driver on medium at 25C degrees.
Allele Type: Conditional knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: VDRC 107131

F_CG10465_6_CKD_NEURON-25C

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Neuron-specific knockdown of CG10465 was generated using RNAi transgenic line with the Elav-Gal4 driver on medium at 25C degrees.
Allele Type: Conditional knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: Bloomington 57172

F_CG10465_7_CKD_NEURON-25C

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Neuron-specific knockdown of CG10465 was generated using RNAi transgenic line with the Elav-Gal4 driver on medium at 25C degrees.
Allele Type: Conditional knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: Bloomington 26002

F_CG10465_1_KD_25C

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Developmental trajectory1
Abnormal
Description: Knockdowns showed an increase in gross defects compared to controls.
 General observations
 Unreported
Appendage development: wing development1
 No change
 Microscopic analysis
 Unreported
Eye development: compound eye morphogenesis1
 No change
 Microscopic analysis
 Larvae
Mortality/lethality: larval1
 No change
 Survival analysis
 Larvae
Mortality/lethality: pupal1
 No change
 Survival analysis
 Pupae
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_CG10465_2_KD_RT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Developmental trajectory1
Abnormal
Description: Knockdowns showed an increase in gross defects compared to controls.
 Microscopic analysis
 Unreported
Appendage development: wing development1
 No change
 Microscopic analysis
 Unreported
Mortality/lethality1
 No change
 Survival analysis
 Unreported
Mortality/lethality: pupal1
 No change
 Survival analysis
 Pupae
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_CG10465_3_CKD_EYE

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal number: sensory1
Increased
Description: Knockdowns showed an increase in the number of proliferating cells compared to controls.
 Immunohistochemistry
 Larvae
Eye development: compound eye morphogenesis1
Abnormal
Description: Knockdowns showed abnormal eye development compared to controls. Specifically, over 80% of Knockdowns showed rough eyes phenotypes. Additional defects were observed in cone cells, primary cells, bristle group, secondary cells, tertiary cells, eye rotation, and hexagon structure of the eye. Moreover, Knockdowns showed an increase in ommatidial diameter, the number of photoreceptor cells, and eye area compared to controls.
 Immunohistochemistry
 Larvae
Cell proliferation1
Increased
Description: Knockdowns showed an increase in the number of cone and secondary pigment cells and photoreceptor neurons.
 Immunohistochemistry
 Larvae
Developmental trajectory1
 No change
 General observations
 Unreported
Mortality/lethality1
 No change
 Survival analysis
 Unreported
Cell differentiation1
 No change
 Immunohistochemistry
 Larvae
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_CG10465_4_CKD_WING

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Appendage development: wing vein development1
Abnormal
Description: Knockdowns showed abnormal wing development compared to controls. Specifically, over 80% of Knockdowns showed wing vein defects.
 Microscopic analysis
 Unreported
Appendage development: wing development1
Abnormal
Description: Knockdowns showed abnormal wing development. Specifically, over 80% of Knockdowns showed crinkled wings phenotype.
 Microscopic analysis
 Unreported
Developmental trajectory1
 No change
 General observations
 Unreported
Mortality/lethality1
 No change
 Survival analysis
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_CG10465_5_CKD_NEURON-25C

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Climbing1
Decreased
Description: Knockdowns showed a decrease in climbing ability compared to controls.
 Climbing assay
 1-10 days
Climbing1
Abnormal
Description: Knockdowns showed abnormal climbing behavior compared to controls.
 Climbing assay
 Unreported
Dendritic architecture: dendritic tree complexity1
Decreased
Description: Knockdowns showed a decrease in the sum number of intersections of dendritic arborizations compared to controls.
 Confocal microscopy
 Third instar larvae
Anatomical projections and connectivity1
Abnormal
Description: Knockdowns showed aberrant patterns of chaoptin staining which revealed abnormal axonal targeting compared to controls.
 Immunohistochemistry
 Larvae
Seizures1
Increased
Description: Knockdowns showed an increase in seizures compared to controls. This increase is evident in both the percentage of seizing flies per sample and the number of seizures per fly.
 Observation of seizures
 Unreported
Targeted expression1
Decreased
Description: Knockdowns showed a decrease in CG10465 gene expression (48% mean expression) compared to controls.
 Quantitative pcr (qrt-pcr)
 Unreported
Developmental trajectory1
 No change
 General observations
 Unreported
Mortality/lethality1
 No change
 Survival analysis
 Unreported
Anatomical projections and connectivity: neuromuscular junctions1
 No change
 Confocal microscopy
 Larvae
Anatomical projections and connectivity: neuromuscular junctions1
 No change
 Confocal microscopy
 Third instar larvae
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Neurophysiology, Physiological parameters, Repetitive behavior, Sensory, Social behavior

F_CG10465_6_CKD_NEURON-25C

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Targeted expression1
Decreased
Description: Knockdowns showed a decrease in CG10465 gene expression (75% mean expression) compared to controls.
 Quantitative pcr (qrt-pcr)
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_CG10465_7_CKD_NEURON-25C

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Targeted expression1
Decreased
Description: Knockdowns showed a decrease in CG10465 gene expression (43% mean expression) compared to controls.
 Quantitative pcr (qrt-pcr)
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ARIH1 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) 25820 Q9Y4X5 IP; LC-MS/MS
Huttlin EL , et al. 2015
ARMC7 armadillo repeat containing 7 79637 Q9H6L4 Y2H
Rual JF , et al. 2005
C6orf55 Vps20-associated 1 homolog (S. cerevisiae) 51534 Q9NP79 Y2H
Rual JF , et al. 2005
CUL3 cullin 3 8452 B7Z600 IP; MS; COMPASS
Bennett EJ , et al. 2010
CUL3 cullin 3 8452 B7Z600 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
CUL3 cullin 3 8452 B7Z600 Y2H
Lin GN , et al. 2015
CUL3 cullin 3 8452 B7Z600 IP; LC-MS/MS
Huttlin EL , et al. 2015
FLJ22494 nudix (nucleoside diphosphate linked moiety X)-type motif 18 79873 Q6ZVK8 Y2H
Rual JF , et al. 2005
FLNC filamin C, gamma 2318 Q14315 IP; LC-MS/MS
Huttlin EL , et al. 2015
KAT7 K(lysine) acetyltransferase 7 11143 B4DGY4 Y2H
Rual JF , et al. 2005
KCTD10 potassium channel tetramerisation domain containing 10 83892 Q9H3F6 IP; MS; COMPASS
Sowa ME , et al. 2009
KCTD10 potassium channel tetramerisation domain containing 10 83892 Q9H3F6 IP; LC-MS/MS
Huttlin EL , et al. 2015
KCTD13 potassium channel tetramerisation domain containing 13 253980 Q8WZ19 IP; MS; COMPASS
Sowa ME , et al. 2009
KCTD13 potassium channel tetramerisation domain containing 13 253980 Q8WZ19 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
LAMB4 laminin, beta 4 22798 A4D0S4 IP; MS; COMPASS
Sowa ME , et al. 2009
LNX ligand of numb-protein X 1, E3 ubiquitin protein ligase 84708 Q8TBB1 Y2H
Rual JF , et al. 2005
MYST2 K(lysine) acetyltransferase 7 11143 B4DGY4 Y2H
Rual JF , et al. 2005
Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 4790 P19838 Y2H; GST
He H , et al. 2001
NUDT18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 79873 Q6ZVK8 Y2H
Rual JF , et al. 2005
PCNA proliferating cell nuclear antigen 5111 P12004 Y2H
Rual JF , et al. 2005
PFDN2 prefoldin subunit 2 5202 B1AQP2 IP; LC-MS/MS
Huttlin EL , et al. 2015
PLEC plectin 5339 Q15149 IP; MS; COMPASS
Sowa ME , et al. 2009
POLD2 polymerase (DNA directed), delta 2, accessory subunit 5425 A4D2J4 Y2H
Rual JF , et al. 2005
SPRTN SprT-like N-terminal domain 83932 Q9H040 TAP; MS
Ghosal G , et al. 2012
SRPX sushi-repeat containing protein, X-linked 8406 B3KWP8 IP; MS; COMPASS
Sowa ME , et al. 2009
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 7020 P05549 Y2H; GST; IP/WB
Ding X , et al. 2008
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 7126 Q13829 IP; MS; COMPASS
Sowa ME , et al. 2009
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 7126 Q13829 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 7126 Q13829 IP; LC-MS/MS
Huttlin EL , et al. 2015
UBC ubiquitin C 7316 P63279 LC-MS/MS
Danielsen JM , et al. 2010
USP25 ubiquitin specific peptidase 25 29761 Q9UHP3 IP; MS; COMPASS
Sowa ME , et al. 2009
USP25 ubiquitin specific peptidase 25 29761 Q9UHP3 IP; LC-MS/MS
Huttlin EL , et al. 2015
VTA1 Vps20-associated 1 homolog (S. cerevisiae) 51534 Q9NP79 Y2H
Rual JF , et al. 2005
ZMYND19 zinc finger, MYND-type containing 19 116225 Q96E35 Y2H
Rual JF , et al. 2005
ZMYND19 zinc finger, MYND-type containing 19 116225 Q96E35 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
CUL3 cullin 3 26554 Q9JLV5 IP/WB
Ibeawuchi SR , et al. 2015
Rnd2 Rho family GTPase 2 11858 Q9QYM5 Y2H; IP/WB
Gladwyn-Ng I , et al. 2016
Rnd3 Rho family GTPase 3 74194 P61588 Y2H; IP/WB
Gladwyn-Ng I , et al. 2016
Sp1 trans-acting transcription factor 1 20683 O89090 Luciferase reporter assay
Zhou J , et al. 2005

HELP
Copyright © 2017 MindSpec, Inc.