Summary Statistics:
ASD Reports: 57
Recent Reports: 4
Annotated variants: 129
Associated CNVs: 4
Evidence score: 4
Gene Score: 3
Relevance to Autism
A paternally-inherited splice-site variant in KCNQ2 was identified in a male ASD proband; this variant was inherited from a father with Asperger disorder and was also observed in the proband's sister, who was reported to exhibit autistic-like behavior (Jiang et al., 2013). A de novo frameshift variant in the KCNQ2 gene was identified in a male ASD proband from the Simons Simplex Collection (PMID 25284784). Mutations in the KCNQ2 gene are responsible for early infantile epileptic encephalopathy-7 (EIEE7; OMIM 613720) and benign familial neonatal seizures-1 (BFNS1; OMIM 121200). Miceli et al. 2022 provided detailed clinical information on fifteen patients (14 novels and 1 previously published) with KCNQ2 p.Arg144 missense variants; all patients had developmental delay with prominent language impairment, and ten of these patients (67%) presented with autistic features. Furthermore, functional analysis of KCNQ2 p.Arg144 missense variants by whole-cell patch-clamp recordings in this report demonstrated that activation gating of homomeric mutant channels was left-shifted, suggesting gain-of-function effects.
Molecular Function
The M channel is a slowly activating and deactivating potassium channel that plays a critical role in the regulation of neuronal excitability. The M channel is formed by the association of the protein encoded by this gene and a related protein encoded by the KCNQ3 gene, both integral membrane proteins. M channel currents are inhibited by M1 muscarinic acetylcholine receptors and activated by retigabine, a novel anti-convulsant drug. Defects in this gene are a cause of benign familial neonatal convulsions type 1 (BFNC), also known as epilepsy, benign neonatal type 1 (EBN1).
References
Primary
Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing.
ASD
Positive Association
De novo mutations in epileptic encephalopathies.
Epilepsy
IS, LGS, DD, ID, ASD, ADHD
Positive Association
PP2A-Bgamma subunit and KCNQ2 K channels in bipolar disorder.
BPD
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
Epilepsy/seizures
Support
Epilepsy/seizures
ASD, ADHD, DD
Support
De novo mutations in synaptic transmission genes including DNM1 cause epileptic encephalopathies.
ID, epilepsy/seizures
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
DD/ID
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Epilepsy/seizures
Support
Epilepsy/seizures
Support
Spontaneous seizure and memory loss in mice expressing an epileptic encephalopathy variant in the calmodulin-binding domain of K v 7.2
Developmental and epileptic encephalopathy 7
Support
Diagnostic exome sequencing of syndromic epilepsy patients in clinical practice.
DD, ID, epilepsy/seizures
Support
ASD, DD, ID, epilepsy/seizures
Support
Dominant-negative effects of KCNQ2 mutations are associated with epileptic encephalopathy.
Epilepsy/seizures
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
Epilepsy/seizures
Support
Analysis of common genetic variation and rare CNVs in the Australian Autism Biobank
ASD
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Epilepsy/seizures
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Exome Pool-Seq in neurodevelopmental disorders.
DD, epilepsy/seizures
Hypotonia
Support
DD, epilepsy/seizures
Support
Autism Spectrum Disorder and a De Novo Kcnq2 Gene Mutation: A Case Report
ASD, epilepsy/seizures
DD, ID
Support
Overrepresentation of genetic variation in the AnkyrinG interactome is related to a range of neurodevelopmental disorders
ID, epilepsy/seizures
ASD
Support
Mutations in HECW2 are associated with intellectual disability and epilepsy.
ID, epilepsy/seizures
Support
DD, ID
Stereotypy
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD/ID
Support
ID, epilepsy/seizures
ASD
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
ID
Support
Clinical utility of multigene panel testing in adults with epilepsy and intellectual disability.
ID, epilepsy/seizures
Support
Gene Mutation Analysis in 253 Chinese Children with Unexplained Epilepsy and Intellectual/Developmental Disabilities.
DD, ID, epilepsy/seizures
Support
Developmental and epileptic encephalopathy-7, DD,
Afs
Support
Genome sequencing of 320 Chinese children with epilepsy: a clinical and molecular study
DD, epilepsy/seizures
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID, epilepsy/seizures
Hypotonia
Support
ASD, epilepsy/seizures
Support
Genetic analysis using targeted exome sequencing of 53 Vietnamese children with developmental and epileptic encephalopathies
DD, epilepsy/seizures
Support
The Clinical and Genetic Features of Co-occurring Epilepsy and Autism Spectrum Disorder in Chinese Children.
ASD, epilepsy/seizures
Support
Epilepsy/seizures
DD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Epilepsy/seizures
DD, ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Confirming the contribution and genetic spectrum of de novo mutation in infantile spasms: Evidence from a Chinese cohort
Epilepsy/seizures
ASD, DD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
ASD
DD, ID, epilepsy/seizures
Support
Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean
Epilepsy/seizures
Support
Variantrecurrence in neurodevelopmental disorders: the use of publicly available genomic data identifies clinically relevant pathogenic missense v...
DD
Support
Epilepsy/seizures
DD
Support
De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.
Support
Monogenic developmental and epileptic encephalopathies of infancy and childhood
DD, epilepsy/seizures
ID
Support
Pathogenic variants in KCNQ2 cause intellectual deficiency without epilepsy: Broadening the phenotypic spectrum of a potassium channelopathy
DD, ID
Autistic features
Support
Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Epilepsy/seizures
Support
Epilepsy/seizures
DD
Support
New Candidates for Autism/Intellectual Disability Identified by Whole-Exome Sequencing
ASD, ID
Highly Cited
A novel potassium channel gene, KCNQ2, is mutated in an inherited epilepsy of newborns.
Epilepsy
Recent Recommendation
KCNQ2 R144 variants cause neurodevelopmental disability with language impairment and autistic features without neonatal seizures through a gain-of-function mechanism
DD, ID
Autistic features, stereotypy, epilepsy/seizures
Recent Recommendation
Converging Evidence for Epistasis between ANK3 and Potassium Channel Gene KCNQ2 in Bipolar Disorder.
Recent Recommendation
Similar early characteristics but variable neurological outcome of patients with a de novo mutation of KCNQ2.
Epilepsy
DD, ID
Recent Recommendation
ASD, epilepsy/seizures
GEN553R001
splice_site_variant
NM_172109.1:c.1247+1G>A
p.?
Familial
Paternal
Multiplex
GEN553R002
frameshift_variant
c.283insGT
Familial
Maternal and paternal
Multi-generational
GEN553R003
missense_variant
c.851A>G
p.Tyr284Cys
Familial
GEN553R004
missense_variant
c.916G>A
p.Ala306Thr
Familial
GEN553R005
frameshift_variant
c.523del
p.Val175CysfsTer34
Familial
GEN553R006
splice_site_variant
c.543G>A
p.Ala181=
Familial
GEN553R007
missense_variant
c.860C>A
p.Thr287Asn
De novo
GEN553R008
missense_variant
c.523G>T
p.Val175Leu
De novo
GEN553R009
missense_variant
c.926C>T
p.Ala309Val
De novo
GEN553R010
missense_variant
c.821C>T
p.Thr274Met
De novo
GEN553R011
missense_variant
c.715G>C
p.Gly239Arg
De novo
GEN553R012
missense_variant
c.881C>T
p.Ala294Val
De novo
GEN553R013
missense_variant
c.911T>C
p.Phe304Ser
De novo
GEN553R014
missense_variant
c.566G>T
p.Gly189Val
De novo
GEN553R015
missense_variant
c.793G>A
p.Ala265Thr
De novo
GEN553R016
missense_variant
c.886A>C
p.Thr296Pro
De novo
GEN553R017
frameshift_variant
c.2234dup
p.Cys746LeufsTer91
De novo
GEN553R018
stop_gained
c.471G>A
p.Trp157Ter
De novo
GEN553R019
missense_variant
c.868G>A
p.Gly290Ser
De novo
GEN553R020
missense_variant
c.997C>T
p.Arg333Trp
De novo
GEN553R021
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R022
frameshift_variant
c.928-26_928-1del
p.?
De novo
Simplex
GEN553R023
missense_variant
c.846C>G
p.Asp282Glu
De novo
Simplex
GEN553R024
missense_variant
c.1004C>T
p.Pro335Leu
De novo
Simplex
GEN553R025
missense_variant
c.841G>A
p.Gly281Arg
De novo
Simplex
GEN553R026
missense_variant
c.793G>A
p.Ala265Thr
De novo
Simplex
GEN553R027
missense_variant
c.788C>T
p.Thr263Ile
De novo
Multi-generational
GEN553R028
missense_variant
c.365C>T
p.Ser122Leu
De novo
Simplex
GEN553R029
missense_variant
c.956A>C
p.Lys319Thr
De novo
Simplex
GEN553R030
missense_variant
c.830C>T
p.Thr277Ile
De novo
Simplex
GEN553R031
missense_variant
c.1655A>C
p.Lys552Thr
De novo
Simplex
GEN553R032
missense_variant
c.1687G>T
p.Asp563Tyr
De novo
Simplex
GEN553R033
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R034
missense_variant
c.902G>A
p.Gly301Asp
De novo
GEN553R035
missense_variant
c.1744A>T
p.Ile582Phe
De novo
GEN553R036
stop_gained
c.1342C>T
p.Arg448Ter
De novo
GEN553R037
missense_variant
c.1742G>A
p.Arg581Gln
De novo
GEN553R038
missense_variant
c.873G>T
p.Arg291Ser
De novo
GEN553R039
missense_variant
c.901G>A
p.Gly301Ser
De novo
GEN553R040
missense_variant
c.802C>T
p.Leu268Phe
De novo
GEN553R041
missense_variant
c.881C>T
p.Ala294Val
De novo
GEN553R042
missense_variant
c.798T>A
p.Asp266Glu
De novo
GEN553R043
frameshift_variant
c.2404_2405insA
p.Val802AspfsTer35
De novo
Multiplex
GEN553R044
inframe_deletion
c.916del
p.Ala306ArgfsTer13
De novo
GEN553R045
missense_variant
c.859A>G
p.Thr287Ala
De novo
Simplex
GEN553R046
missense_variant
c.902G>A
p.Gly301Asp
De novo
GEN553R047
missense_variant
c.1067T>G
p.Leu356Arg
De novo
GEN553R048
missense_variant
c.1741C>G
p.Arg581Gly
De novo
Simplex
GEN553R049
missense_variant
c.1048A>C
p.Asn350His
Familial
Maternal
GEN553R050
missense_variant
c.794C>T
p.Ala265Val
De novo
GEN553R051
frameshift_variant
c.2327del
p.Gly776AlafsTer126
De novo
GEN553R052
missense_variant
c.821C>T
p.Thr274Met
De novo
GEN553R053
missense_variant
c.749T>G
p.Val250Gly
De novo
Simplex
GEN553R054
missense_variant
c.1687G>A
p.Asp563Asn
De novo
Simplex
GEN553R055
copy_number_loss
Familial
Maternal
Multiplex
GEN553R056
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R057
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R058
missense_variant
c.1004C>T
p.Pro335Leu
De novo
GEN553R059
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R060
missense_variant
c.881C>T
p.Ala294Val
Unknown
Unknown
GEN553R061
missense_variant
c.593G>A
p.Arg198Gln
De novo
Simplex
GEN553R062
frameshift_variant
c.1750_1751dup
p.His585GlyfsTer54
Familial
Paternal
GEN553R063
missense_variant
c.953T>C
p.Leu318Pro
Unknown
GEN553R064
missense_variant
c.34C>G
p.Pro12Ala
Familial
Maternal
GEN553R065
missense_variant
c.878T>C
p.Leu293Pro
De novo
Simplex
GEN553R066
missense_variant
c.629G>A
p.Arg210His
De novo
Simplex
GEN553R067
missense_variant
c.504C>G
p.Phe168Leu
Unknown
GEN553R068
missense_variant
c.628C>T
p.Arg210Cys
De novo
Simplex
GEN553R069
missense_variant
c.620G>A
p.Arg207Gln
Unknown
GEN553R070
missense_variant
c.868G>A
p.Gly290Ser
De novo
Simplex
GEN553R071
missense_variant
c.812G>A
p.Gly271Asp
De novo
Simplex
GEN553R072
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R073
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R074
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R075
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R076
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R077
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R078
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R079
missense_variant
c.430C>T
p.Arg144Trp
De novo
Multiplex (monozygotic twins)
GEN553R080
missense_variant
c.430C>T
p.Arg144Trp
De novo
GEN553R081
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R082
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R083
missense_variant
c.431G>A
p.Arg144Gln
Unknown
Not maternal
GEN553R084
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R085
missense_variant
c.431G>A
p.Arg144Gln
De novo
GEN553R086
missense_variant
c.1997C>T
p.Pro666Leu
Unknown
GEN553R087
splice_region_variant
c.1632-5T>A
Unknown
GEN553R088
missense_variant
c.1035A>C
p.Arg345Ser
Unknown
GEN553R089
frameshift_variant
c.1341del
p.Ser448HisfsTer63
De novo
GEN553R090
missense_variant
c.365C>T
p.Ser122Leu
De novo
GEN553R091
missense_variant
c.1849C>T
p.Pro617Ser
Unknown
GEN553R092
splice_site_variant
c.1709+2C>T
Unknown
GEN553R093
missense_variant
c.254T>C
p.Leu85Pro
Unknown
GEN553R094
missense_variant
c.838T>C
p.Tyr280His
Unknown
GEN553R095
missense_variant
c.373G>T
p.Ala125Ser
Unknown
GEN553R096
missense_variant
c.793G>A
p.Ala265Thr
Unknown
Unknown
GEN553R097
missense_variant
c.602G>A
p.Arg201His
De novo
GEN553R098
missense_variant
c.997C>T
p.Arg333Trp
De novo
GEN553R099
synonymous_variant
c.2412G>A
p.Thr804%3D
De novo
Simplex
GEN553R100
missense_variant
c.1984T>C
p.Tyr662His
De novo
GEN553R101
missense_variant
c.1667G>A
p.Gly556Asp
De novo
GEN553R102
intron_variant
c.1817+759G>T
De novo
Simplex
GEN553R103
missense_variant
c.749T>C
p.Val250Ala
De novo
GEN553R104
missense_variant
c.749T>C
p.Val250Ala
De novo
GEN553R105
missense_variant
c.772A>T
p.Asn258Tyr
De novo
GEN553R106
missense_variant
c.779A>C
p.His260Pro
De novo
GEN553R107
missense_variant
c.793G>A
p.Ala265Thr
De novo
GEN553R108
missense_variant
c.793G>A
p.Ala265Thr
De novo
GEN553R109
missense_variant
c.868G>A
p.Gly290Ser
De novo
GEN553R110
missense_variant
c.593G>A
p.Arg198Gln
De novo
GEN553R111
missense_variant
c.868G>T
p.Gly290Cys
De novo
Simplex
GEN553R112
frameshift_variant
c.1054_1055del
p.Ser352AlafsTer48
De novo
Simplex
GEN553R113
missense_variant
c.1078T>G
p.Trp360Gly
De novo
Simplex
GEN553R114
frameshift_variant
c.2126dup
p.Ser710LeufsTer173
Unknown
Simplex
GEN553R115
missense_variant
c.1790C>A
p.Pro597Gln
Unknown
Simplex
GEN553R116
missense_variant
c.915C>G
p.Phe305Leu
Unknown
Simplex
GEN553R117
missense_variant
c.845A>T
p.Asp282Val
Unknown
Simplex
GEN553R118
missense_variant
c.590T>C
p.Leu197Pro
Unknown
Simplex
GEN553R119
missense_variant
c.1678C>T
p.Arg560Trp
Unknown
Simplex
GEN553R120
stop_gained
c.1525G>T
p.Glu509Ter
Unknown
Unknown
GEN553R121
frameshift_variant
c.402del
p.Ile134MetfsTer37
Familial
Paternal
GEN553R122
stop_gained
c.470G>A
p.Trp157Ter
Unknown
Extended multiplex
GEN553R123
missense_variant
c.1764A>T
p.Arg588Ser
Unknown
Multi-generational
GEN553R124
splice_region_variant
c.1764-6C>A
Familial
Paternal
Multi-generational
GEN553R125
missense_variant
c.569A>G
p.Asn190Ser
Familial
Paternal
Simplex
GEN553R126
missense_variant
c.587C>T
p.Ala196Val
De novo
Simplex
GEN553R127
missense_variant
c.833T>C
p.Ile278Thr
De novo
GEN553C001
intron_variant
A/G
315 patients with bipolar disorder (BPD) and 300 controls from the University College of London
Discovery
GEN553C002
intron_variant
C/T
315 patients with bipolar disorder (BPD) and 300 controls from the University College of London
Discovery
20
Deletion-Duplication
33
Summary Statistics:
# of Reports: 1
# of Models: 1
Model Summary
Mutant mice exhibit increased susceptibility to induced seizures, and rare spontaneous seizures as adults.
References
Primary
Neuronal voltage-gated ion channels are genetic modifiers of generalized epilepsy with febrile seizures plus.
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Targeted deletion of Kcnq2 gene.
Allele Type: Targeted (Knock Out)
Strain of Origin: Not Specified
Genetic Background: 129S6/SvEvTac
ES Cell Line: Not Specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified
No change
Observation of seizures
Unreported
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Sensory, Social behavior
Summary Statistics:
Total Interactions: 10
Total Publications: 6
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ANK3
ankyrin 3, node of Ranvier (ankyrin G)
288
Q12955
in silico target prediction
Rasmussen HB , et al. 2007
Ank3
ankyrin 3, node of Ranvier
361833
O70511
IP/WB; Co-localization
Xu M and Cooper EC 2015
CALM1
calmodulin 1 (phosphorylase kinase, delta)
801
P62158
FRET
FRET; Size-exclusion chromatography (SEC)
Alberdi A , et al. 2015
Calm1
calmodulin 1
24242
P62161
FRET
FRET; Size-exclusion chromatography (SEC)
Alberdi A , et al. 2015
GOLM1
golgi membrane protein 1
51280
B3KNK9
IP; LC-MS/MS
Huttlin EL , et al. 2015
KCNQ2
potassium voltage-gated channel, KQT-like subfamily, member 2
3785
O43526
FRET
Alberdi A , et al. 2015
KCNQ3
Potassium voltage-gated channel subfamily KQT member 3
O88944
IP/WB
Liu W and Devaux JJ 2013
Dpysl2
dihydropyrimidinase-like 2
12934
O08553
IP; LC-MS/MS; IP/WB
Jiang L , et al. 2015
Tuba1a
tubulin, alpha 1A
22142
P68369
IP; LC-MS/MS; IP/WB
Jiang L , et al. 2015
Tubb2a
tubulin, beta 2A class IIA
22151
Q7TMM9
IP; LC-MS/MS
Jiang L , et al. 2015