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Relevance to Autism

Mutations in the KCNB1 gene are associated with epileptic encephalopathy-26 (EIEE26; OMIM 616056). de Kovel et al., 2017 examined the clinical spectrum associated with KCNB1 variation in a cohort of 26 patients. Developmental delay was reported in all patients, with intractable epilepsy (84%) and features of epileptic encephalopathy on EEG (95%) also frequently observed; ASD was reported in 10/20 patients (50%). Among the de novo variants in KCNB1 identified in patients with ASD were three predicted loss-of-function variants and a missense variant that was demonstrated to impair channel sensitivity and cooperativity. Parrini et al., 2017 identified a de novo nonsense variant in KCNB1 in a male patient presenting with West syndrome and autism spectrum disorder. Bar et al., 2019 presented genetic and phenotypic data from a cohort of 64 patients (37 previously unreported and 27 novel) with pathogenic KCNB1 variants and reported that behavioral issues were observed in 37/49 patients with available data, including autism spectrum disorder in 26 cases (53%). Kang et al., 2019 described clinical and functional analysis of KCNB1 variants identified in 32 patients, eight of whom were reported to present with ASD; pathogenic variants were found to display diverse functional effects, including altered current density and shifts in the voltage-dependence of activation and/or inactivaton, as well as reduced total protein expression and/or cell-surface expression. Bar et al., 2021 assessed the adaptive and behavioral features in a series of 25 individuals with a KCNB1 encephalopathy, using the the Social Communication Questionnaire (SCQ) to screen for autism spectrum disorder (ASD); the SCQ was filled by 18/21 caregivers according to the age criteria for this questionnaire (> 4 years), and thirteen out of 18 participants had a score above the threshold of risk for ASD. Five rare and potentially damaging missense variants, as well as two de novo loss-of-function variants, in the KCNB1 gene were reported in ASD proband from the Autism Sequencing Consortium, the MSSNG cohort, and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified KCNB1 as a gene reaching exome-wide significance (P < 2.5E-06).

Molecular Function

This gene encodes a member of the potassium channel, voltage-gated, shab-related subfamily. The voltage-gated potassium channel encoded by the KCNB1 gene mediates transmembrane potassium transport in excitable membranes, primarily in the brain, but also in the pancreas and cardiovascular system; it also contributes to the regulation of the action potential (AP) repolarization, duration and frequency of repetitive AP firing in neurons, muscle cells and endocrine cells and plays a role in homeostatic attenuation of electrical excitability throughout the brain. Mutations in the KCNB1 gene are associated with epileptic encephalopathy-26 (EIEE26; OMIM 616056).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Neurodevelopmental Disorders Caused by De Novo Variants in KCNB1 Genotypes and Phenotypes.
DD, epilepsy/seizures
ASD
Negative Association
ASD
Support
DD, ID, epilepsy/seizures
Support
Characterization of a KCNB1 variant associated with autism, intellectual disability, and epilepsy.
ID, epilepsy/seizures
Autistic features, disruptive behavior
Support
Developmental and epileptic encephalopathy 26
Support
Developmental and epilepsy spectrum of KCNB1 encephalopathy with long-term outcome
Early infantile epileptic encephalopathy-26, DD, I
Autistic features, ADHD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Epilepsy/seizures, ASD
Support
ASD, epilepsy/seizures
Support
Phenotypic and genetic spectrum of epilepsy with myoclonic atonic seizures
ID, epilepsy/seizures
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
DD
Support
De novo KCNB1 mutations in epileptic encephalopathy.
Support
ASD
ID, epilepsy/seizures
Support
Excess of de novo variants in genes involved in chromatin remodelling in patients with marfanoid habitus and intellectual disability
ID, epilepsy/seizures
Marfanoid habitus
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Epilepsy/seizures
Support
Epilepsy/seizures
Support
Meta-Analyses Support Previous and Novel Autism Candidate Genes: Outcomes of an Unexplored Brazilian Cohort.
ASD
Support
Correlation Analyses of Clinical Manifestations and Variant Effects in KCNB1-Related Neurodevelopmental Disorder
DD, epilepsy/seizures
Autistic features, stereotypy
Support
ASD, ID
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Clinical features and outcome of 6 new patients carrying de novo KCNB1 gene mutations.
DD, ID, epilepsy/seizures
ASD
Support
Confirming the contribution and genetic spectrum of de novo mutation in infantile spasms: Evidence from a Chinese cohort
Epilepsy/seizures
ASD, DD
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Adaptive behavior and psychiatric comorbidities in KCNB1 encephalopathy
Developmental and epileptic encephalopathy 26
ASD
Recent Recommendation
Spectrum of KV 2.1 Dysfunction in KCNB1-Associated Neurodevelopmental Disorders.
Epileptic encephalopathy-26 (EIEE26)
Recent Recommendation
Expanding the genetic and phenotypic relevance of KCNB1 variants in developmental and epileptic encephalopathies: 27 new patients and overview of t...
Epileptic encephalopathy-26 (EIEE26)
Behavioral disorders (including ASD)

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN938R001 
 stop_gained 
 c.1747C>T 
 p.Arg583Ter 
 De novo 
  
  
 GEN938R002 
 stop_gained 
 c.1599C>A 
 p.Tyr533Ter 
 De novo 
  
  
 GEN938R003 
 frameshift_variant 
 T>TA 
 p.Lys502fs 
 De novo 
  
  
 GEN938R004 
 missense_variant 
 c.1248C>G 
 p.Phe416Leu 
 De novo 
  
  
 GEN938R005 
 missense_variant 
 c.1248C>G 
 p.Phe416Leu 
 De novo 
  
  
 GEN938R006 
 missense_variant 
 c.1201G>A 
 p.Gly401Arg 
 De novo 
  
  
 GEN938R007 
 missense_variant 
 c.1193G>T 
 p.Cys398Phe 
 De novo 
  
  
 GEN938R008 
 missense_variant 
 c.1173A>C 
 p.Lys391Asn 
 De novo 
  
  
 GEN938R009 
 missense_variant 
 c.1153C>A 
 p.Pro385Thr 
 De novo 
  
  
 GEN938R010 
 missense_variant 
 c.1141G>A 
 p.Gly381Arg 
 De novo 
  
  
 GEN938R011 
 missense_variant 
 c.1135G>A 
 p.Gly379Arg 
 De novo 
  
  
 GEN938R012 
 missense_variant 
 c.1133T>C 
 p.Val378Ala 
 De novo 
  
  
 GEN938R013 
 missense_variant 
 c.1121C>T 
 p.Thr374Ile 
 De novo 
  
  
 GEN938R014 
 missense_variant 
 c.1121C>T 
 p.Thr374Ile 
 De novo 
  
  
 GEN938R015 
 stop_gained 
 c.1107G>A 
 p.Trp369Ter 
 De novo 
  
  
 GEN938R016 
 frameshift_variant 
 c.1088del 
 p.Ser363ThrfsTer13 
 De novo 
  
  
 GEN938R017 
 missense_variant 
 c.1041C>A 
 p.Ser347Arg 
 De novo 
  
  
 GEN938R018 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 Unknown 
  
  
 GEN938R019 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R020 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R021 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R022 
 stop_gained 
 c.682C>T 
 p.Gln228Ter 
 De novo 
  
  
 GEN938R023 
 missense_variant 
 c.632T>C 
 p.Leu211Pro 
 De novo 
  
  
 GEN938R024 
 missense_variant 
 c.629C>T 
 p.Thr210Met 
 De novo 
  
  
 GEN938R025 
 missense_variant 
 c.629C>A 
 p.Thr210Lys 
 De novo 
  
  
 GEN938R026 
 missense_variant 
 c.605C>T 
 p.Ser202Phe 
 De novo 
  
  
 GEN938R027 
 stop_gained 
 c.1109G>A 
 p.Trp370Ter 
 De novo 
  
  
 GEN938R028 
 missense_variant 
 c.595A>T 
 p.Ile199Phe 
 De novo 
  
  
 GEN938R029 
 stop_gained 
 c.1109G>A 
 p.Trp370Ter 
 De novo 
  
  
 GEN938R030 
 stop_gained 
 c.1747C>T 
 p.Arg583Ter 
 De novo 
  
  
 GEN938R031 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R032 
 missense_variant 
 c.586A>T 
 p.Ile196Phe 
 De novo 
  
  
 GEN938R033 
 missense_variant 
 c.629C>T 
 p.Thr210Met 
 De novo 
  
  
 GEN938R034 
 missense_variant 
 c.1045G>T 
 p.Val349Phe 
 De novo 
  
  
 GEN938R035 
 missense_variant 
 c.128A>G 
 p.Glu43Gly 
 De novo 
  
 Simplex 
 GEN938R036 
 missense_variant 
 c.128A>G 
 p.Glu43Gly 
 De novo 
  
  
 GEN938R037 
 missense_variant 
 c.629C>G 
 p.Thr210Arg 
 De novo 
  
  
 GEN938R038 
 frameshift_variant 
 c.857del 
 p.Val286GlyfsTer58 
 De novo 
  
  
 GEN938R039 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R040 
 missense_variant 
 c.934C>T 
 p.Arg312Cys 
 De novo 
  
  
 GEN938R041 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R042 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R043 
 missense_variant 
 c.968C>T 
 p.Thr323Ile 
 De novo 
  
  
 GEN938R044 
 stop_gained 
 c.984C>G 
 p.Tyr328Ter 
 De novo 
  
  
 GEN938R045 
 missense_variant 
 c.1001T>C 
 p.Leu334Pro 
 De novo 
  
  
 GEN938R046 
 missense_variant 
 c.1041C>G 
 p.Ser347Arg 
 De novo 
  
  
 GEN938R047 
 missense_variant 
 c.1045G>T 
 p.Val349Phe 
 De novo 
  
  
 GEN938R048 
 missense_variant 
 c.1105T>C 
 p.Trp369Arg 
 De novo 
  
  
 GEN938R049 
 missense_variant 
 c.1115C>T 
 p.Thr372Ile 
 De novo 
  
  
 GEN938R050 
 missense_variant 
 c.1115C>A 
 p.Thr372Asn 
 De novo 
  
  
 GEN938R051 
 missense_variant 
 c.1130C>A 
 p.Thr377Asn 
 De novo 
  
  
 GEN938R052 
 missense_variant 
 c.1132G>T 
 p.Val378Phe 
 De novo 
  
  
 GEN938R053 
 missense_variant 
 c.1139A>G 
 p.Tyr380Cys 
 De novo 
  
  
 GEN938R054 
 missense_variant 
 c.1144G>A 
 p.Asp382Asn 
 De novo 
  
  
 GEN938R055 
 missense_variant 
 c.1180G>A 
 p.Gly394Arg 
 De novo 
  
  
 GEN938R056 
 missense_variant 
 c.1183G>A 
 p.Gly395Arg 
 De novo 
  
  
 GEN938R057 
 missense_variant 
 c.1183G>A 
 p.Gly395Arg 
 Unknown 
  
  
 GEN938R058 
 missense_variant 
 c.1201G>A 
 p.Gly401Arg 
 De novo 
  
  
 GEN938R059 
 missense_variant 
 c.1226T>C 
 p.Ile409Thr 
 De novo 
  
  
 GEN938R060 
 missense_variant 
 c.1248C>A 
 p.Phe416Leu 
 Unknown 
  
  
 GEN938R061 
 stop_gained 
 c.1489G>T 
 p.Glu497Ter 
 De novo 
  
  
 GEN938R062 
 stop_gained 
 c.1747C>T 
 p.Arg583Ter 
 Familial 
 Maternal 
 Simplex 
 GEN938R063 
 missense_variant 
 c.629C>T 
 p.Thr210Met 
 De novo 
  
  
 GEN938R064 
 frameshift_variant 
 c.817dup 
 p.Tyr273LeufsTer37 
 De novo 
  
  
 GEN938R065 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R066 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R067 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R068 
 missense_variant 
 c.934C>T 
 p.Arg312Cys 
 De novo 
  
  
 GEN938R069 
 missense_variant 
 c.934C>T 
 p.Arg312Cys 
 De novo 
  
  
 GEN938R070 
 missense_variant 
 c.973C>T 
 p.Arg325Trp 
 De novo 
  
  
 GEN938R071 
 missense_variant 
 c.990G>C 
 p.Glu330Asp 
 De novo 
  
  
 GEN938R072 
 missense_variant 
 c.1108T>C 
 p.Trp370Arg 
 De novo 
  
  
 GEN938R073 
 missense_variant 
 c.1133T>C 
 p.Val378Ala 
 De novo 
  
  
 GEN938R074 
 missense_variant 
 c.1153C>A 
 p.Pro385Thr 
 De novo 
  
  
 GEN938R075 
 missense_variant 
 c.1246T>C 
 p.Phe416Leu 
 De novo 
  
  
 GEN938R076 
 missense_variant 
 c.1371C>G 
 p.Ser457Arg 
 Familial 
  
 Simplex 
 GEN938R077 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
 Simplex 
 GEN938R078 
 missense_variant 
 c.1240A>G 
 p.Asn414Asp 
 De novo 
  
 Simplex 
 GEN938R079 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R080 
 missense_variant 
 c.629C>T 
 p.Thr210Met 
 Unknown 
  
  
 GEN938R081 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R082 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 Unknown 
  
  
 GEN938R083 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R084 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R085 
 missense_variant 
 c.956C>T 
 p.Ser319Phe 
 De novo 
  
  
 GEN938R086 
 missense_variant 
 c.1153C>A 
 p.Pro385Thr 
 De novo 
  
  
 GEN938R087 
 stop_gained 
 c.1463G>A 
 p.Trp488Ter 
 De novo 
  
  
 GEN938R088 
 stop_gained 
 c.1747C>T 
 p.Arg583Ter 
 De novo 
  
 Simplex 
 GEN938R089 
 missense_variant 
 c.629C>T 
 p.Thr210Met 
 De novo 
  
 Simplex 
 GEN938R090 
 missense_variant 
 c.980G>C 
 p.Ser327Thr 
 Unknown 
  
  
 GEN938R091 
 frameshift_variant 
 c.571del 
 p.Ala192ProfsTer2 
 Unknown 
  
  
 GEN938R092 
 missense_variant 
 629C>T 
 p.Thr210Met 
 Unknown 
  
  
 GEN938R093 
 missense_variant 
 629C>T 
 p.Thr210Met 
 Unknown 
  
  
 GEN938R094 
 missense_variant 
 c.814C>T 
 p.Pro272Ser 
 Unknown 
  
  
 GEN938R095 
 missense_variant 
 c.940T>C 
 p.Ser314Pro 
 Unknown 
  
  
 GEN938R096 
 missense_variant 
 c.954G>T 
 p.Gln318His 
 Unknown 
  
  
 GEN938R097 
 missense_variant 
 c.990G>T 
 p.Glu330Asp 
 Unknown 
  
  
 GEN938R098 
 missense_variant 
 c.1130C>T 
 p.Thr377Ile 
 Unknown 
  
  
 GEN938R099 
 missense_variant 
 c.1136G>T 
 p.Gly379Val 
 Unknown 
  
  
 GEN938R100 
 missense_variant 
 c.1222G>A 
 p.Pro408Ser 
 Unknown 
  
  
 GEN938R101 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN938R102 
 stop_gained 
 c.1579C>T 
 p.Gln527Ter 
 De novo 
  
  
 GEN938R103 
 missense_variant 
 c.1141G>A 
 p.Gly381Arg 
 Unknown 
  
  
 GEN938R104 
 missense_variant 
 c.1237G>A 
 p.Val413Ile 
 De novo 
  
  
 GEN938R105 
 missense_variant 
 c.935G>A 
 p.Arg312His 
 De novo 
  
  
 GEN938R106 
 missense_variant 
 c.597C>G 
 p.Ile199Met 
 De novo 
  
  
 GEN938R107 
 stop_gained 
 c.1297C>T 
 p.Arg433Ter 
 De novo 
  
  
 GEN938R108 
 missense_variant 
 c.1083C>G 
 p.Phe361Leu 
 De novo 
  
 Simplex 
 GEN938R109 
 missense_variant 
 c.955T>C 
 p.Ser319Pro 
 De novo 
  
 Simplex 
 GEN938R110 
 missense_variant 
 c.934C>T 
 p.Arg312Cys 
 De novo 
  
 Simplex 
 GEN938R111 
 synonymous_variant 
 c.660C>T 
 p.Phe220%3D 
 De novo 
  
 Simplex 
 GEN938R112 
 frameshift_variant 
 c.643_644del 
 p.Gln215GlufsTer4 
 De novo 
  
  
 GEN938R113 
 frameshift_variant 
 c.522del 
 p.Lys174AsnfsTer20 
 Familial 
 Maternal 
  
 GEN938R114 
 missense_variant 
 c.49C>A 
 p.Pro17Thr 
 De novo 
  
  
 GEN938R115 
 missense_variant 
 c.1222C>T 
 p.Pro408Ser 
 Unknown 
  
  
 GEN938R116 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 Unknown 
  
 Simplex 
 GEN938R117 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN938R118 
 missense_variant 
 c.934C>T 
 p.Arg312Cys 
 De novo 
  
 Simplex 
  et al.  
 GEN938R119 
 missense_variant 
 c.1183G>A 
 p.Gly395Arg 
 Unknown 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Deletion-Duplication
 14
 

No Animal Model Data Available

No PIN Data Available
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