Summary Statistics:
ASD Reports: 28
Recent Reports: 4
Annotated variants: 119
Associated CNVs: 2
Evidence score: 4
Gene Score: S
Relevance to Autism
Mutations in the KCNB1 gene are associated with epileptic encephalopathy-26 (EIEE26; OMIM 616056). de Kovel et al., 2017 examined the clinical spectrum associated with KCNB1 variation in a cohort of 26 patients. Developmental delay was reported in all patients, with intractable epilepsy (84%) and features of epileptic encephalopathy on EEG (95%) also frequently observed; ASD was reported in 10/20 patients (50%). Among the de novo variants in KCNB1 identified in patients with ASD were three predicted loss-of-function variants and a missense variant that was demonstrated to impair channel sensitivity and cooperativity. Parrini et al., 2017 identified a de novo nonsense variant in KCNB1 in a male patient presenting with West syndrome and autism spectrum disorder. Bar et al., 2019 presented genetic and phenotypic data from a cohort of 64 patients (37 previously unreported and 27 novel) with pathogenic KCNB1 variants and reported that behavioral issues were observed in 37/49 patients with available data, including autism spectrum disorder in 26 cases (53%). Kang et al., 2019 described clinical and functional analysis of KCNB1 variants identified in 32 patients, eight of whom were reported to present with ASD; pathogenic variants were found to display diverse functional effects, including altered current density and shifts in the voltage-dependence of activation and/or inactivaton, as well as reduced total protein expression and/or cell-surface expression. Bar et al., 2021 assessed the adaptive and behavioral features in a series of 25 individuals with a KCNB1 encephalopathy, using the the Social Communication Questionnaire (SCQ) to screen for autism spectrum disorder (ASD); the SCQ was filled by 18/21 caregivers according to the age criteria for this questionnaire (> 4 years), and thirteen out of 18 participants had a score above the threshold of risk for ASD. Five rare and potentially damaging missense variants, as well as two de novo loss-of-function variants, in the KCNB1 gene were reported in ASD proband from the Autism Sequencing Consortium, the MSSNG cohort, and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified KCNB1 as a gene reaching exome-wide significance (P < 2.5E-06).
Molecular Function
This gene encodes a member of the potassium channel, voltage-gated, shab-related subfamily. The voltage-gated potassium channel encoded by the KCNB1 gene mediates transmembrane potassium transport in excitable membranes, primarily in the brain, but also in the pancreas and cardiovascular system; it also contributes to the regulation of the action potential (AP) repolarization, duration and frequency of repetitive AP firing in neurons, muscle cells and endocrine cells and plays a role in homeostatic attenuation of electrical excitability throughout the brain. Mutations in the KCNB1 gene are associated with epileptic encephalopathy-26 (EIEE26; OMIM 616056).
References
Primary
Neurodevelopmental Disorders Caused by De Novo Variants in KCNB1 Genotypes and Phenotypes.
DD, epilepsy/seizures
ASD
Support
DD, ID, epilepsy/seizures
Support
Characterization of a KCNB1 variant associated with autism, intellectual disability, and epilepsy.
ID, epilepsy/seizures
Autistic features, disruptive behavior
Support
Developmental and epileptic encephalopathy 26
Support
Developmental and epilepsy spectrum of KCNB1 encephalopathy with long-term outcome
Early infantile epileptic encephalopathy-26, DD, I
Autistic features, ADHD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Epilepsy/seizures, ASD
Support
ASD, epilepsy/seizures
Support
Phenotypic and genetic spectrum of epilepsy with myoclonic atonic seizures
ID, epilepsy/seizures
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
DD
Support
De novo KCNB1 mutations in epileptic encephalopathy.
Support
ASD
ID, epilepsy/seizures
Support
Excess of de novo variants in genes involved in chromatin remodelling in patients with marfanoid habitus and intellectual disability
ID, epilepsy/seizures
Marfanoid habitus
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Epilepsy/seizures
Support
Epilepsy/seizures
Support
Meta-Analyses Support Previous and Novel Autism Candidate Genes: Outcomes of an Unexplored Brazilian Cohort.
ASD
Support
Correlation Analyses of Clinical Manifestations and Variant Effects in KCNB1-Related Neurodevelopmental Disorder
DD, epilepsy/seizures
Autistic features, stereotypy
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Clinical features and outcome of 6 new patients carrying de novo KCNB1 gene mutations.
DD, ID, epilepsy/seizures
ASD
Support
Confirming the contribution and genetic spectrum of de novo mutation in infantile spasms: Evidence from a Chinese cohort
Epilepsy/seizures
ASD, DD
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Adaptive behavior and psychiatric comorbidities in KCNB1 encephalopathy
Developmental and epileptic encephalopathy 26
ASD
Recent Recommendation
Spectrum of KV 2.1 Dysfunction in KCNB1-Associated Neurodevelopmental Disorders.
Epileptic encephalopathy-26 (EIEE26)
Recent Recommendation
Expanding the genetic and phenotypic relevance of KCNB1 variants in developmental and epileptic encephalopathies: 27 new patients and overview of t...
Epileptic encephalopathy-26 (EIEE26)
Behavioral disorders (including ASD)
GEN938R001
stop_gained
c.1747C>T
p.Arg583Ter
De novo
GEN938R002
stop_gained
c.1599C>A
p.Tyr533Ter
De novo
GEN938R003
frameshift_variant
T>TA
p.Lys502fs
De novo
GEN938R004
missense_variant
c.1248C>G
p.Phe416Leu
De novo
GEN938R005
missense_variant
c.1248C>G
p.Phe416Leu
De novo
GEN938R006
missense_variant
c.1201G>A
p.Gly401Arg
De novo
GEN938R007
missense_variant
c.1193G>T
p.Cys398Phe
De novo
GEN938R008
missense_variant
c.1173A>C
p.Lys391Asn
De novo
GEN938R009
missense_variant
c.1153C>A
p.Pro385Thr
De novo
GEN938R010
missense_variant
c.1141G>A
p.Gly381Arg
De novo
GEN938R011
missense_variant
c.1135G>A
p.Gly379Arg
De novo
GEN938R012
missense_variant
c.1133T>C
p.Val378Ala
De novo
GEN938R013
missense_variant
c.1121C>T
p.Thr374Ile
De novo
GEN938R014
missense_variant
c.1121C>T
p.Thr374Ile
De novo
GEN938R015
stop_gained
c.1107G>A
p.Trp369Ter
De novo
GEN938R016
frameshift_variant
c.1088del
p.Ser363ThrfsTer13
De novo
GEN938R017
missense_variant
c.1041C>A
p.Ser347Arg
De novo
GEN938R018
missense_variant
c.935G>A
p.Arg312His
Unknown
GEN938R019
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R020
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R021
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R022
stop_gained
c.682C>T
p.Gln228Ter
De novo
GEN938R023
missense_variant
c.632T>C
p.Leu211Pro
De novo
GEN938R024
missense_variant
c.629C>T
p.Thr210Met
De novo
GEN938R025
missense_variant
c.629C>A
p.Thr210Lys
De novo
GEN938R026
missense_variant
c.605C>T
p.Ser202Phe
De novo
GEN938R027
stop_gained
c.1109G>A
p.Trp370Ter
De novo
GEN938R028
missense_variant
c.595A>T
p.Ile199Phe
De novo
GEN938R029
stop_gained
c.1109G>A
p.Trp370Ter
De novo
GEN938R030
stop_gained
c.1747C>T
p.Arg583Ter
De novo
GEN938R031
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R032
missense_variant
c.586A>T
p.Ile196Phe
De novo
GEN938R033
missense_variant
c.629C>T
p.Thr210Met
De novo
GEN938R034
missense_variant
c.1045G>T
p.Val349Phe
De novo
GEN938R035
missense_variant
c.128A>G
p.Glu43Gly
De novo
Simplex
GEN938R036
missense_variant
c.128A>G
p.Glu43Gly
De novo
GEN938R037
missense_variant
c.629C>G
p.Thr210Arg
De novo
GEN938R038
frameshift_variant
c.857del
p.Val286GlyfsTer58
De novo
GEN938R039
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R040
missense_variant
c.934C>T
p.Arg312Cys
De novo
GEN938R041
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R042
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R043
missense_variant
c.968C>T
p.Thr323Ile
De novo
GEN938R044
stop_gained
c.984C>G
p.Tyr328Ter
De novo
GEN938R045
missense_variant
c.1001T>C
p.Leu334Pro
De novo
GEN938R046
missense_variant
c.1041C>G
p.Ser347Arg
De novo
GEN938R047
missense_variant
c.1045G>T
p.Val349Phe
De novo
GEN938R048
missense_variant
c.1105T>C
p.Trp369Arg
De novo
GEN938R049
missense_variant
c.1115C>T
p.Thr372Ile
De novo
GEN938R050
missense_variant
c.1115C>A
p.Thr372Asn
De novo
GEN938R051
missense_variant
c.1130C>A
p.Thr377Asn
De novo
GEN938R052
missense_variant
c.1132G>T
p.Val378Phe
De novo
GEN938R053
missense_variant
c.1139A>G
p.Tyr380Cys
De novo
GEN938R054
missense_variant
c.1144G>A
p.Asp382Asn
De novo
GEN938R055
missense_variant
c.1180G>A
p.Gly394Arg
De novo
GEN938R056
missense_variant
c.1183G>A
p.Gly395Arg
De novo
GEN938R057
missense_variant
c.1183G>A
p.Gly395Arg
Unknown
GEN938R058
missense_variant
c.1201G>A
p.Gly401Arg
De novo
GEN938R059
missense_variant
c.1226T>C
p.Ile409Thr
De novo
GEN938R060
missense_variant
c.1248C>A
p.Phe416Leu
Unknown
GEN938R061
stop_gained
c.1489G>T
p.Glu497Ter
De novo
GEN938R062
stop_gained
c.1747C>T
p.Arg583Ter
Familial
Maternal
Simplex
GEN938R063
missense_variant
c.629C>T
p.Thr210Met
De novo
GEN938R064
frameshift_variant
c.817dup
p.Tyr273LeufsTer37
De novo
GEN938R065
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R066
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R067
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R068
missense_variant
c.934C>T
p.Arg312Cys
De novo
GEN938R069
missense_variant
c.934C>T
p.Arg312Cys
De novo
GEN938R070
missense_variant
c.973C>T
p.Arg325Trp
De novo
GEN938R071
missense_variant
c.990G>C
p.Glu330Asp
De novo
GEN938R072
missense_variant
c.1108T>C
p.Trp370Arg
De novo
GEN938R073
missense_variant
c.1133T>C
p.Val378Ala
De novo
GEN938R074
missense_variant
c.1153C>A
p.Pro385Thr
De novo
GEN938R075
missense_variant
c.1246T>C
p.Phe416Leu
De novo
GEN938R076
missense_variant
c.1371C>G
p.Ser457Arg
Familial
Simplex
GEN938R077
missense_variant
c.916C>T
p.Arg306Cys
De novo
Simplex
GEN938R078
missense_variant
c.1240A>G
p.Asn414Asp
De novo
Simplex
GEN938R079
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R080
missense_variant
c.629C>T
p.Thr210Met
Unknown
GEN938R081
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R082
missense_variant
c.935G>A
p.Arg312His
Unknown
GEN938R083
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R084
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R085
missense_variant
c.956C>T
p.Ser319Phe
De novo
GEN938R086
missense_variant
c.1153C>A
p.Pro385Thr
De novo
GEN938R087
stop_gained
c.1463G>A
p.Trp488Ter
De novo
GEN938R088
stop_gained
c.1747C>T
p.Arg583Ter
De novo
Simplex
GEN938R089
missense_variant
c.629C>T
p.Thr210Met
De novo
Simplex
GEN938R090
missense_variant
c.980G>C
p.Ser327Thr
Unknown
GEN938R091
frameshift_variant
c.571del
p.Ala192ProfsTer2
Unknown
GEN938R092
missense_variant
629C>T
p.Thr210Met
Unknown
GEN938R093
missense_variant
629C>T
p.Thr210Met
Unknown
GEN938R094
missense_variant
c.814C>T
p.Pro272Ser
Unknown
GEN938R095
missense_variant
c.940T>C
p.Ser314Pro
Unknown
GEN938R096
missense_variant
c.954G>T
p.Gln318His
Unknown
GEN938R097
missense_variant
c.990G>T
p.Glu330Asp
Unknown
GEN938R098
missense_variant
c.1130C>T
p.Thr377Ile
Unknown
GEN938R099
missense_variant
c.1136G>T
p.Gly379Val
Unknown
GEN938R100
missense_variant
c.1222G>A
p.Pro408Ser
Unknown
GEN938R101
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN938R102
stop_gained
c.1579C>T
p.Gln527Ter
De novo
GEN938R103
missense_variant
c.1141G>A
p.Gly381Arg
Unknown
GEN938R104
missense_variant
c.1237G>A
p.Val413Ile
De novo
GEN938R105
missense_variant
c.935G>A
p.Arg312His
De novo
GEN938R106
missense_variant
c.597C>G
p.Ile199Met
De novo
GEN938R107
stop_gained
c.1297C>T
p.Arg433Ter
De novo
GEN938R108
missense_variant
c.1083C>G
p.Phe361Leu
De novo
Simplex
GEN938R109
missense_variant
c.955T>C
p.Ser319Pro
De novo
Simplex
GEN938R110
missense_variant
c.934C>T
p.Arg312Cys
De novo
Simplex
GEN938R111
synonymous_variant
c.660C>T
p.Phe220%3D
De novo
Simplex
GEN938R112
frameshift_variant
c.643_644del
p.Gln215GlufsTer4
De novo
GEN938R113
frameshift_variant
c.522del
p.Lys174AsnfsTer20
Familial
Maternal
GEN938R114
missense_variant
c.49C>A
p.Pro17Thr
De novo
GEN938R115
missense_variant
c.1222C>T
p.Pro408Ser
Unknown
GEN938R116
missense_variant
c.916C>T
p.Arg306Cys
Unknown
Simplex
GEN938R117
copy_number_loss
Unknown
Simplex
GEN938R118
missense_variant
c.934C>T
p.Arg312Cys
De novo
Simplex
GEN938R119
missense_variant
c.1183G>A
p.Gly395Arg
Unknown
No Common Variants Available
20
Deletion-Duplication
14
No Animal Model Data Available
No PIN Data Available