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Relevance to Autism

Soldovieri et al., 2023 described 14 individuals carrying de novo missense variants in the KCNA3 gene, most of whom presented with a developmental and epileptic encephalopathy characterized by speech delay with or without motor delay, intellectual disability, epilepsy, and autism spectrum disorder; functional analysis of Kv1.3 channels carrying each missense variant revealed heterogeneous functional changes, ranging from loss-of-function effects with or without dominant negative effects to mixed loss- and gain-of-function effects. A de novo nonsense variant in the KCNA3 gene had previously been reported in an ASD proband from the SPARK cohort (Zhou et al., 2022).

Molecular Function

Potassium channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shaker-related subfamily. This member contains six membrane-spanning domains with a shaker-type repeat in the fourth segment. It belongs to the delayed rectifier class, members of which allow nerve cells to efficiently repolarize following an action potential. It plays an essential role in T-cell proliferation and activation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD, DD, ID
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1420R001 
 missense_variant 
 c.32C>G 
 p.Pro11Arg 
 De novo 
  
  
  et al.  
 GEN1420R002 
 missense_variant 
 c.1070C>T 
 p.Ala357Val 
 De novo 
  
 Multiplex 
  et al.  
 GEN1420R003 
 missense_variant 
 c.1081G>A 
 p.Ala361Thr 
 De novo 
  
 Multiplex 
  et al.  
 GEN1420R004 
 missense_variant 
 c.1292T>A 
 p.Ile431Asn 
 De novo 
  
  
  et al.  
 GEN1420R005 
 missense_variant 
 c.1328C>T 
 p.Thr443Ile 
 De novo 
  
  
  et al.  
 GEN1420R006 
 missense_variant 
 c.1328C>T 
 p.Thr443Ile 
 De novo 
  
  
  et al.  
 GEN1420R007 
 missense_variant 
 c.1363A>G 
 p.Ile455Val 
 De novo 
  
 Simplex 
  et al.  
 GEN1420R008 
 missense_variant 
 c.1378G>A 
 p.Val460Met 
 De novo 
  
  
  et al.  
 GEN1420R009 
 missense_variant 
 c.1402G>C 
 p.Gly468Arg 
 Unknown 
  
 Simplex 
  et al.  
 GEN1420R010 
 missense_variant 
 c.1402_1403delinsTT 
 p.Gly468Phe 
 De novo 
  
  
  et al.  
 GEN1420R011 
 missense_variant 
 c.1403G>T 
 p.Gly468Val 
 De novo 
  
  
  et al.  
 GEN1420R012 
 missense_variant 
 c.1430C>A 
 p.Pro477His 
 Unknown 
  
 Simplex 
  et al.  
 GEN1420R013 
 missense_variant 
 c.1432G>A 
 p.Val478Met 
 De novo 
  
  
  et al.  
 GEN1420R014 
 missense_variant 
 c.1574G>A 
 p.Ser525Asn 
 De novo 
  
  
  et al.  
 GEN1420R015 
 stop_gained 
 c.436G>T 
 p.Glu146Ter 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 1
 
1
Duplication
 2
 
1
Deletion-Duplication
 23
 
1
Deletion
 2
 
1
Duplication
 2
 

No Animal Model Data Available

No PIN Data Available
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