HELP     Sign In
Search

Relevance to Autism

Whole-genome sequencing of a cohort of 30 adults with unexplained developmental and epileptic encephalopathies in Qaiser et al., 2021 identified three individuals with potentially pathogenic KCNA2 variants; all three of these patients presented with seizures, intellectual disability, and autism spectrum disorder. Autism spectrum disorder has previously been reported in a subset of individuals with KCNA2-associated movement disorders (Helbig et al., 2016; Ngo et al., 2020). An inherited frameshift variant in KCNA2 has also been identified in an ASD proband from the iHART cohort (Ruzzo et al., 2019).

Molecular Function

Potassium channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shaker-related subfamily. This member contains six membrane-spanning domains with a shaker-type repeat in the fourth segment. It belongs to the delayed rectifier class, members of which allow nerve cells to efficiently repolarize following an action potential. Heterozygous mutations in this gene are responsible for a form of developmental and epileptic encephalopathy [Developmental and epileptic encephalopathy 32 (DEE32); OMIM 6163

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome sequencing identifies rare tandem repeat expansions and copy number variants in Lennox-Gastaut syndrome
ASD, ID, epilepsy/seizures
DD
Support
De novo loss- or gain-of-function mutations in KCNA2 cause epileptic encephalopathy
ID, epilepsy/seizures
DD
Support
DD, epilepsy/seizures
Support
Ataxia and myoclonic epilepsy due to a heterozygous new mutation in KCNA2: proposal for a new channelopathy
Epilepsy/seizures
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
A diagnostic ceiling for exome sequencing in cerebellar ataxia and related neurological disorders
Epilepsy/seizures
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
DD, epilepsy/seizures
ASD, ID
Support
A recurrent mutation in KCNA2 as a novel cause of hereditary spastic paraplegia and ataxia
ID
ASD, DD, epilepsy/seizures
Support
ASD
DD, ID, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1290R001 
 frameshift_variant 
 c.894+440del 
  
 Unknown 
  
 Unknown 
 GEN1290R002 
 missense_variant 
 c.890G>A 
 p.Arg297Gln 
 De novo 
  
 Simplex 
 GEN1290R003 
 missense_variant 
 c.547G>A 
 p.Glu183Lys 
 De novo 
  
  
 GEN1290R004 
 missense_variant 
 c.881G>A 
 p.Arg294His 
 Familial 
 Maternal 
 Multi-generational 
 GEN1290R005 
 missense_variant 
 c.881G>A 
 p.Arg294His 
 Familial 
 Maternal 
 Simplex 
 GEN1290R006 
 missense_variant 
 c.881G>A 
 p.Arg294His 
 De novo 
  
 Multiplex 
 GEN1290R007 
 missense_variant 
 c.890G>A 
 p.Arg297Gln 
 De novo 
  
 Simplex 
 GEN1290R008 
 missense_variant 
 c.890G>A 
 p.Arg297Gln 
 Unknown 
  
  
 GEN1290R009 
 frameshift_variant 
 c.106del 
 p.Val36Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1290R010 
 missense_variant 
 c.890G>T 
 p.Arg297Leu 
 De novo 
  
 Simplex 
 GEN1290R011 
 missense_variant 
 c.894+320C>T 
  
 De novo 
  
 Simplex 
 GEN1290R012 
 missense_variant 
 c.788T>C 
 p.Ile263Thr 
 De novo 
  
 Simplex 
 GEN1290R013 
 missense_variant 
 c.440G>A 
 p.Arg147Lys 
 Unknown 
  
  
 GEN1290R014 
 missense_variant 
 c.1214C>T 
 p.Pro405Leu 
 De novo 
  
 Simplex 
 GEN1290R015 
 missense_variant 
 c.1214C>T 
 p.Pro405Leu 
 De novo 
  
 Simplex 
 GEN1290R016 
 missense_variant 
 c.894G>T 
 p.Leu298Phe 
 De novo 
  
 Simplex 
 GEN1290R017 
 missense_variant 
 c.890G>A 
 p.Arg297Gln 
 De novo 
  
 Simplex 
 GEN1290R018 
 synonymous_variant 
 c.798C>T 
 p.Tyr266%3D 
 Unknown 
  
  
 GEN1290R019 
 missense_variant 
 c.529A>G 
 p.Ile177Val 
 Unknown 
  
  
 GEN1290R020 
 missense_variant 
 c.511A>G 
 p.Met171Val 
 Familial 
 Paternal 
 Simplex 
 GEN1290R021a 
 missense_variant 
 c.1214C>T 
 p.Pro405Leu 
 Unknown 
  
 Simplex 
 GEN1290R022 
 missense_variant 
 c.928C>T 
 p.His310Tyr 
 Unknown 
  
 Multiplex 
  et al.  
 GEN1290R023 
 missense_variant 
 c.929A>G 
 p.His310Arg 
 Unknown 
 Not maternal 
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 1
 
1
Duplication
 2
 
1
Deletion-Duplication
 23
 
1
Deletion
 2
 
1
Duplication
 2
 
1
Deletion
 3
 

No Animal Model Data Available

No PIN Data Available
HELP
Copyright © 2017 MindSpec, Inc.