Summary Statistics:
ASD Reports: 8
Recent Reports: 0
Annotated variants: 66
Associated CNVs: 5
Evidence score: 3
Gene Score:
Relevance to Autism
A de novo missense variant in the KAT6B gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014), while a paternally-inherited nonsense variant in this gene was identified in an ASD proband from the SPARK cohort (Feliciano et al., 2019). Additional de novo variants in KAT6B have been identified in probands with intellectual disability (Lelieveld et al., 2016) and from the Deciphering Developmental Disorders 2017 study. Single-molecular molecular inversion probe (smMIP) sequencing of 7,954 probands from cohorts with a primary diagnosis of ASD in Wang et al., 2020 identified one individual with a likely-gene disruptive variant and 17 individuals with missense variants with CADD scores 30 in the KAT6B gene.
Molecular Function
The protein encoded by this gene is a histone acetyltransferase and component of the MOZ/MORF protein complex. In addition to its acetyltransferase activity, the encoded protein has transcriptional activation activity in its N-terminal end and transcriptional repression activity in its C-terminal end. This protein is necessary for RUNX2-dependent transcriptional activation and could be involved in brain development. Heterozygous mutations in KAT6B have been found in patients with genitopatellar syndrome (OMIM 606170) and SBBYSS syndrome (OMIM 603736).
References
Primary
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD
DD
Support
Novel variants in KAT6B spectrum of disorders expand our knowledge of clinical manifestations and molecular mechanisms
DD, ID
ASD, ADHD, epilepsy/seizures
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
ASD
DD, ID, epilepsy/seizures
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID, epilepsy/seizures
GEN1231R001
missense_variant
c.3231C>A
p.Asp1077Glu
De novo
Simplex
GEN1231R002
stop_gained
c.1507C>T
p.Gln503Ter
Familial
Paternal
Simplex
GEN1231R003
frameshift_variant
c.626del
p.Arg209LeufsTer41
Unknown
GEN1231R004
missense_variant
c.104C>T
p.Ala35Val
Familial
Maternal
GEN1231R005
missense_variant
c.3409C>T
p.Arg1137Cys
Familial
Maternal
GEN1231R006
missense_variant
c.3802G>A
p.Gly1268Arg
Familial
Maternal
GEN1231R007
missense_variant
c.4834C>T
p.Arg1612Cys
Familial
Paternal
GEN1231R008
missense_variant
c.4834C>T
p.Arg1612Cys
Familial
Paternal
GEN1231R009
missense_variant
c.5390G>A
p.Arg1797Gln
Unknown
GEN1231R010
missense_variant
c.5390G>A
p.Arg1797Gln
Unknown
GEN1231R011
missense_variant
c.5837G>A
p.Arg1946His
Unknown
GEN1231R012
missense_variant
c.5837G>A
p.Arg1946His
Unknown
GEN1231R013
missense_variant
c.2696G>A
p.Arg899His
Unknown
GEN1231R014
missense_variant
c.3455C>T
p.Thr1152Met
Unknown
GEN1231R015
missense_variant
c.5870G>A
p.Arg1957Gln
Unknown
GEN1231R016
missense_variant
c.307C>T
p.Arg103Cys
Unknown
GEN1231R017
missense_variant
c.2479C>T
p.Arg827Trp
Unknown
GEN1231R018
missense_variant
c.3028C>T
p.Arg1010Trp
Unknown
GEN1231R019
missense_variant
c.3028C>T
p.Arg1010Trp
Unknown
GEN1231R020
missense_variant
c.2348G>A
p.Arg783Gln
Unknown
GEN1231R021
frameshift_variant
c.3349_3350del
p.Gln1117ValfsTer19
Unknown
GEN1231R022
frameshift_variant
c.2165_2166dup
p.Ile723Ter
Unknown
GEN1231R023
frameshift_variant
c.3401del
p.Gly1134ValfsTer11
Unknown
GEN1231R024
stop_gained
c.2347C>T
p.Arg783Ter
Unknown
GEN1231R025
missense_variant
c.3154C>T
p.Arg1052Trp
Unknown
GEN1231R026
missense_variant
c.236G>A
p.Arg79His
Unknown
GEN1231R027
missense_variant
c.236G>A
p.Arg79His
Unknown
GEN1231R028
missense_variant
c.236G>A
p.Arg79His
Unknown
GEN1231R029
missense_variant
c.3760C>T
p.Arg1254Cys
Unknown
GEN1231R030
splice_site_variant
c.1566+2T>A
De novo
Simplex
GEN1231R031
frameshift_variant
c.2709del
p.Glu904ArgfsTer27
De novo
Simplex
GEN1231R032
frameshift_variant
c.1946del
p.Asn649MetfsTer27
De novo
Simplex
GEN1231R033
stop_gained
c.176C>G
p.Ser59Ter
De novo
Simplex
GEN1231R034
stop_gained
c.1030C>T
p.Arg344Ter
De novo
Simplex
GEN1231R035
splice_site_variant
c.3373-2A>G
De novo
Simplex
GEN1231R036
missense_variant
c.5041G>A
p.Glu1681Lys
De novo
Simplex
GEN1231R037
missense_variant
c.5015G>C
p.Ser1672Thr
De novo
Simplex
GEN1231R038
frameshift_variant
c.5327del
p.Leu1776Ter
De novo
Simplex
GEN1231R039
frameshift_variant
c.2852del
p.Gly951ValfsTer11
De novo
Simplex
GEN1231R040
stop_gained
c.2347C>T
p.Arg783Ter
De novo
Simplex
GEN1231R041
frameshift_variant
c.2190del
p.Leu731SerfsTer34
De novo
Simplex
GEN1231R042
frameshift_variant
c.2588del
p.Leu863CysfsTer68
De novo
Simplex
GEN1231R043
stop_gained
c.3887C>A
p.Ser1296Ter
De novo
Simplex
GEN1231R044
stop_gained
c.5389C>T
p.Arg1797Ter
De novo
Simplex
GEN1231R045
frameshift_variant
c.3201del
p.Gly1068GlufsTer21
De novo
GEN1231R046
frameshift_variant
c.3769_3772del
p.Lys1258GlyfsTer13
De novo
GEN1231R047
frameshift_variant
c.3769_3772delTCTA
p.Lys1258GlyfsTer13
De novo
GEN1231R048
frameshift_variant
c.3769_3772delTCTA
p.Lys1258GfsTer13
De novo
GEN1231R049
frameshift_variant
c.3220_3223del
p.Lys1075GlyfsTer13
Unknown
GEN1231R050
frameshift_variant
c.3532_3580dup
p.Asn1194ArgfsTer26
De novo
GEN1231R051
frameshift_variant
c.3553dup
p.Glu1185GlyfsTer19
Unknown
GEN1231R052
stop_gained
c.3349C>T
p.Gln1117Ter
De novo
GEN1231R053
frameshift_variant
c.2800_2801del
p.Gln934ValfsTer19
De novo
GEN1231R054
stop_gained
c.3580C>T
p.Gln1194Ter
De novo
GEN1231R055
frameshift_variant
c.3918_3919insCAACAGG
p.Ile1307GlnfsTer4
De novo
GEN1231R056
frameshift_variant
c.4205_4206del
p.Ser1402CysfsTer5
De novo
GEN1231R057
frameshift_variant
c.4538dup
p.Lys1514GlufsTer27
Unknown
GEN1231R058
stop_gained
c.5254C>T
p.Gln1752Ter
De novo
GEN1231R059
stop_gained
c.5389C>T
p.Arg1797Ter
De novo
GEN1231R060
frameshift_variant
c.3413_3414del
p.Gln1138ArgfsTer20
De novo
GEN1231R061
frameshift_variant
c.3590_3591del
p.Lys1197ArgfsTer6
De novo
GEN1231R062
frameshift_variant
c.4368_4369dup
p.Glu1457GlyfsTer5
De novo
GEN1231R063
frameshift_variant
c.4048_4054del
p.Ala1350TrpfsTer14
De novo
GEN1231R064
frameshift_variant
c.4652_4661del
p.Met1551LysfsTer87
De novo
GEN1231R065
frameshift_variant
c.3152del
p.Ser1051ThrfsTer63
De novo
GEN1231R066
missense_variant
c.5386G>C
p.Glu1796Gln
Unknown
Simplex
No Common Variants Available
10
Deletion-Duplication
11
No Animal Model Data Available
No Interactions Available