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Relevance to Autism

Paternally-inherited deletions in the KANK1 gene have been identified in a male proband with ASD, intellectual disability, and motor and speech delays (Vanzo et al., 2013), as well as in nine affected children from a four-generation family presenting with cerebral palsy, quadriplegia, and intellectual disability (Lerer et al., 2005).

Molecular Function

The protein encoded by this gene belongs to the Kank family of proteins, which contain multiple ankyrin repeat domains. This family member functions in cytoskeleton formation by regulating actin polymerization. Mutations in this gene cause cerebral palsy spastic quadriplegic type 2, a central nervous system development disorder.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Familial KANK1 deletion that does not follow expected imprinting pattern.
ASD
ID
Negative Association
Small interstitial 9p24.3 deletions principally involving KANK1 are likely benign copy number variants.
ASD, DD, ID
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.
ID
Brain abnormalities, hypotonia
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
Deletion of the ANKRD15 gene at 9p24.3 causes parent-of-origin-dependent inheritance of familial cerebral palsy.
ID
Cerebral palsy
Support
Duplication of 9p24.3 in three unrelated patients and their phenotypes, considering affected genes, and similar recurrent variants
ASD, DD
ADHD
Recent Recommendation
Clinical significance of copy number variants involving KANK1 in patients with neurodevelopmental disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN530R001 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN530R002 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multi-generational 
 GEN530R003 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN530R004 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN530R005 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN530R006 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN530R007 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN530R008 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN530R009 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN530R010 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN530R011 
 missense_variant 
 c.3789G>C 
 p.Gln1263His 
 Familial 
 Maternal 
 Multiplex 
 GEN530R012a 
 missense_variant 
 c.2763C>G 
 p.Ile921Met 
 Familial 
 Both parents 
 Simplex 
 GEN530R013 
 missense_variant 
 c.1742G>A 
 p.Cys581Tyr 
 De novo 
  
 Simplex 
 GEN530R014 
 splice_site_variant 
 c.2896+2T>G 
  
 Familial 
 Maternal 
 Simplex 
 GEN530R015 
 copy_number_gain 
  
  
 Unknown 
  
 Simplex 
 GEN530R016 
 frameshift_variant 
 c.1852del 
 p.Thr618GlnfsTer3 
 Unknown 
  
  
 GEN530R017 
 missense_variant 
 c.1490C>T 
 p.Ser497Leu 
 De novo 
  
 Simplex 
 GEN530R018 
 missense_variant 
 c.2287C>A 
 p.Gln763Lys 
 De novo 
  
  
 GEN530R019 
 missense_variant 
 c.3295A>G 
 p.Thr1099Ala 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Deletion
 2
 
9
Deletion-Duplication
 40
 
9
Duplication
 7
 
9
Duplication
 3
 
9
Duplication
 2
 
9
Duplication
 4
 
9
Deletion
 3
 
9
N/A
 5
 
9
Deletion
 10
 
9
Deletion
 7
 
9
Deletion-Duplication
 13
 
9
Duplication
 3
 
9
Duplication
 1
 

No Animal Model Data Available

 

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