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Relevance to Autism

Knockout of the JAKMIP1 gene in mice resulted in reduced translation of PSD proteins, disrupted glutamatergic signaling, and autistic-like behaviors such as social deficits, stereotyped activity, and abnormal postnatal vocalizations (Berg et al., 2015). JAKMIP1 had previously been shown to be differentially expressed in lymphoblastoid cells from autistic males as well as in Fmr1 knockout-mice (Nishimura et al., 2007).

Molecular Function

The protein encoded by the JAKMIP1 gene associates with microtubules and may play a role in the microtubule-dependent transport of the GABA-B receptor. It also may play a role in JAK1 signaling and regulate microtubule cytoskeleton rearrangements.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse.
Support
Exome Pool-Seq in neurodevelopmental disorders.
ASD, ID, epilepsy/seizures
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.
DD, ID, epilepsy/seizures
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Evidence of novel fine-scale structural variation at autism spectrum disorder candidate loci.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN790R001 
 stop_gained 
 c.1441C>T 
 p.Arg481Ter 
 De novo 
  
 Simplex 
 GEN790R002 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN790R003 
 missense_variant 
 c.1756G>C 
 p.Asp586His 
 De novo 
  
  
 GEN790R004 
 missense_variant 
 c.1399A>C 
 p.Thr467Pro 
 De novo 
  
 Simplex 
 GEN790R005 
 splice_site_variant 
 c.1925A>G 
 p.Glu642Gly 
 Unknown 
  
  
 GEN790R006 
 missense_variant 
 c.610G>A 
 p.Asp204Asn 
 Unknown 
  
  
 GEN790R007 
 missense_variant 
 c.1478G>A 
 p.Arg493Gln 
 De novo 
  
 Simplex 
 GEN790R008 
 missense_variant 
 c.829G>A 
 p.Val277Ile 
 De novo 
  
  
 GEN790R009 
 missense_variant 
 c.53C>T 
 p.Ala18Val 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model

Model Summary

JAKMIP1 is an RNA binding protein.

References

Type
Title
Author, Year
Additional
JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse.

M_JAKMIP1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Chimeras were produced from Velocigene embryonic stem cells in which Jakmip1 coding exons 28 were replaced with a LacZ-Neo cassette by homologous recombination.
Allele Type: Targeted(Knock-Out)
Strain of Origin: C57BL/6
Genetic Background: C57BL/6
ES Cell Line: Velocigene embryonic stem cells in which Jakmip1 coding exons 28 were replaced with a LacZ-Neo cassette
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_JAKMIP1_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Decreased
Description: Jakmip1 ko mice show impaired motor coordination and decreased strength.
Exp Paradigm: Latency to fall from the rotarod measured; maximum time of trial 180 s; p values calculated using a two-tailed unpaired t test; males and females tested-accelerating rotarod test
 Accelerating rotarod test
 2-4 months
General locomotor activity1
Decreased
Description: Jakmip1 ko mice show impaired motor coordination and decreased strength.
Exp Paradigm: Latency to fall from the rotarod measured; maximum time of trial 180 s; p values calculated using a two-tailed unpaired t test; males and females tested- wire hang test
 Wire hang test
 2-4 months
Self grooming: home cage/familiar environment1
Increased
Description: Over 90% penetrance of grooming in jakmip1 ko mice, mouse analogs of restrictive and repetitive behaviors observed in asd
Exp Paradigm: Behavior recorded by automated system top scan over 10 minute period; videos scored blinded to genotype for grooming; grooming was defined by repetitive cleaning of body and face; males and females tetsed
 Grooming behavior assessments
 2-6 months
Cerebellar morphology1
Decreased
Description: Cerebellar volume is reduced in jakmip1 ko mice compared to control
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Neocortex morphology: size1
Decreased
Description: Cortical volume is reduced jakmip1 ko mice compared to control
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Brain size1
Decreased
Description: Total volume, cortex, caudate putamen, and cerebellar volume are decreased in jakmip1 ko mice; absence of a strain by age effect in any of the structures analyzed indicates that this is most likely developmental microcephaly rather than neurodegeneration
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Morphology of the basal ganglia: striatum: caudoputamen1
Decreased
Description: Volume of caudate putamen is reduced jakmip1 ko mice compared to control
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Brain anatomy1
Abnormal
Description: Total volume, cortex, caudate putamen, and cerebellar volume are decreased in jakmip1 ko mice compared to controls, indicative of developmental microcephaly
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Cortical thickness1
Decreased
Description: Reduced cortical thickness and volume
Exp Paradigm: Live scan imaging
 Magnetic resonance imaging (mri)
 2, 10 months
Synaptic transmission: excitatory1
Decreased
Description: The proportion of striatal medium sized spiny neurons (msns) showing ampa and nmda currents, showed a greater nmdar-mediated response in jakmip1 ko than wt mice; the charge and decay time are significantly increased compared to wt responses in postnatal jakmip1 ko msns;
Exp Paradigm: Ampa receptor antagonist nbqx (10m) was included in the external solution when recording nmdar-mediated responses; holding potential of -70 mv
 Whole-cell patch clamp
 P11-p15
Synaptic transmission: excitatory1
Decreased
Description: Glutamatergic signaling was disrupted in jakmip1 ko mice compared to control
Exp Paradigm: Coronal slices of postnatal and adult male mice were used; whole-cell patch-clamp was recorded in voltage clamp mode; for evoked synaptic currents, stimulating electrode was placed in the corpus callosum 300m from the recorded cell
 Whole-cell patch clamp
 P11-p15
Synaptic neuroreceptor ratio (nmdar/ampar) dependent transmission1
Decreased
Description: A proportion of jakmip1 ko striatal dorsolateral medium-sized spiny neurons (msns) (postnatal 25%, adult 16%) showing an ampar-mediated response failed to display an nmdar-mediated response, whereas all wt msns responded
Exp Paradigm: Coronal slices of postnatal and adult male mice were used; whole-cell patch-clamp was recorded in voltage clamp mode; for evoked synaptic currents, stimulating electrode was placed in the corpus callosum 300m from the recorded cell
 Whole-cell patch clamp
 P11-p16
Decay kinetics of evoked post synaptic currents1
Increased
Description: Charge of inward ampa current was significantly increased in jakmip1 ko msns compared to wt msns due to an increased duration of the slowly desensitizing component
Exp Paradigm: Coronal slices of postnatal and adult male mice were used; whole-cell patch-clamp was recorded in voltage clamp mode; for evoked synaptic currents, stimulating electrode was placed in the corpus callosum 300m from the recorded cell
 Whole-cell patch clamp
 P11-p16
Vertical jumping or back flipping1
Increased
Description: Over 90% penetrance of repetetive jumping in jakmip1 ko mice, mouse analogs of restrictive and repetitive behaviors observed in asd; this behavior is mediated by the striatal glutamatergic system
Exp Paradigm: Behavior recorded by automated system top scan over 10 minute period; videos scored blinded to genotype for grooming; grooming was defined by repetitive cleaning of body and face; males and females tetsed
 Grooming behavior assessments
 2-6 months
Repetitive digging1
Decreased
Description: Jakmip1 ko mice buried fewer marbles than wt mice; consistent with the decreased anxiety suggested by performance in the light-dark box
Exp Paradigm: 12 marbles were placed equidistantly in a 3x4 grid; number of marbles that were buried more than two thirds into the bedding were counted and one photograph was taken for each cage to verify results
 Marble-burying test
 1.9-6 months
Perseveration1
Increased
Description: Jakmip1 ko mice show increased perseveration in the t maze; significantly fewer alterations than wt mice
Exp Paradigm: T maze spontaneous alternation test; chi-squared test on the number of overall choices of left or right; no bias in arm choice observed; males and females tetsed
 T-maze test
 2-4 months
Social interaction1
Decreased
Description: Social dysfunction in jakmip1 ko mice is not due to disrupted olfaction
Exp Paradigm: Behavior was recorded by the automated system, top scan; males and females tested; distance traveled and average velocity over a 20 minute recording period measured in open field test-three-chamber social approach test
 Three-chamber social approach test
 1.5-4 months
Social interaction1
Decreased
Description: Social dysfunction in jakmip1 ko mice is not due to disrupted olfaction
Exp Paradigm: Behavior was recorded by the automated system, top scan; males and females tested; distance traveled and average velocity over a 20 minute recording period measured in open field test- open field test
 Open field test
 1.5-4 months
Huddling behavior1
Decreased
Description: Jakmip1 ko mice showed an increased time to return to huddle; loss of jakmip1 disrupts striatal nmdar signaling, contributing to the disruption of their behavior
Exp Paradigm: Measured time to return to huddle; test run blinded to genotype; males and females tested
 Home cage behavior
 P14-p16
Ultrasonic vocalization: isolation induced1
Increased
Description: Jakmip1 ko mice showed a significant increase in postnatal ultrasonic vocalizations in various call types across all time points, unrelated to body weight, compared to wt controls upon separation from their mother
Exp Paradigm: Pups were separated from their mother and placed in a sound proof chamber; recording room was heated; usvs were recorded for 5 minutes using avisoft software (berlin, germany); mice were weighed after testing and returned to the home cage; mice were tested and scored blinded to genotype
 Monitoring ultrasonic vocalizations
 P6, p9, p12
Anxiety1
Decreased
Description: Jakmip1 ko mice spent more time in the light compartment compared to the dark compartment, showed a significant reduction of latency to enter the light compartment, increased border crossings suggestive of either reduced anxiety or increased impulsivity
Exp Paradigm: Number of cross overs between light and dark chambers was recorded by the automated system, top scan; males and females tested
 Light-dark exploration test
 1.4-4 months
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Jakmip1 ko mice showed reduced noise-cued fear response, indicative of a potential disruption of auditory-amygdala circuits
Exp Paradigm: Shock intensity 0.5 ma, shock duration was two seconds; tone intensity 80db, tone length 30 seconds, tone frequency 2000 hertz (hz); mice were allowed 30 minutes to habituate to the room before trials
 Fear conditioning test
 9-11 months
Protein expression level evidence1
Decreased
Description: Psd95 protein level decreased in jakmip1 ko mice compared to wt controls
Exp Paradigm: Protein expression levels measured in postnatal neocortex synaptosomal membranes of jakmip1 ko mice and wt controls
 Western blot
 P8-p14
Gene expression1
Decreased
Description: Comparison of the distribution of psd95 mrna in the jakmip1 ko versus wt mice revealed a reduction of psd95 mrna in the monosome and polyribosome fractions from jakmip1 ko mice
Exp Paradigm: Polysome, monosome and mrnp fractions analysed
 Quantitative pcr (qrt-pcr)
 P8-p14
Protein expression level evidence1
Abnormal
Description: Pabpc1 and ddx5 proteins showed a statistically significant shift from polyribosome fractions to monosome and mrnp fractions in jakmip1 ko mice compared to controls; jakmip1 contributes to the association of pabpc1 and ddx5 with polyribosomes; jakmip1 peak expression in mouse neocortical development is at p8-p14
Exp Paradigm: Proteins were quantified by western blot in ribosomal fractions
 Western blot
 P8-p14
Protein expression level evidence1
Decreased
Description: Glun2a (grin2a), glun2b (grin2b), shank2, and shank3a, all members of an nmdar scaffolding complex, were reduced in striatal synapses of jakmip1 ko mice compared to controls during postnatal development, but not adulthood; glun2a, shank2, and shank3a, but not glun2b, were also reduced in synaptosomal membranes from postnatal neocortex of jakmip1 ko mice compared to controls, consistent with regional differences
Exp Paradigm: Western blot; quantification of intensity
 Western blot
 P8-p14, adult
Regulation of translation1
Decreased
Description: Jakmip1 knockout reduces translation; jakmip1 regulates neuronal translation
Exp Paradigm: Fluorescent non-canonical amino acid tagging (funcat); nascent protein synthesis defined as the mean signal intensity (total pixel intensity/area measured); significance across three trials estimated using mixed effects regression with a fixed effect covariate for imaging date and a random intercept for litter
 Western blot
 P8-p14
Protein binding1
Decreased
Description: Ddx5, clasp2, pabpc1 and camk2g confirmed jakmip1 binding partners; jakmip1 binds an evolutionarily conserved protein interactome related to neural translation during postnatal cortical development
Exp Paradigm: Both jakmip1 and the binding partners were immunoprecipitated individually to confirm binding
 Co-immunoprecipitation
 P8-p14
Size/growth1
 No change
 General observations
 P6, p9, p12
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 9-11 months
Gene expression1
 No change
 Quantitative pcr (qrt-pcr)
 P8-p14
Gene expression1
 No change
 Quantitative pcr (qrt-pcr)
 P8-p14
Protein expression level evidence1
 No change
 Western blot
 P8-p14, adult
Protein expression level evidence1
 No change
 Western blot
 P8-p14
Action potential property: amplitude1
 No change
 Whole-cell patch clamp
 P11-p15
Decay kinetics of evoked post synaptic currents1
 No change
 Whole-cell patch clamp
 P11-p15
Decay kinetics of evoked post synaptic currents1
 No change
 Whole-cell patch clamp
 1.5-2.3 months
Synaptic transmission: excitatory1
 No change
 Whole-cell patch clamp
 1.5-2.3 months
Olfaction1
 No change
 Buried food test
 2-3 months
Pain or nociception1
 No change
 Hot plate test
 5-7 months
Nest building behavior1
 No change
 Nest building assay
 3-6 months
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
Actc1 actin, alpha, cardiac muscle 1 11464 P68033 MudPIT
Berg JM , et al. 2015
App amyloid beta (A4) precursor protein 11820 P12023 RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Camk2a calcium/calmodulin-dependent protein kinase II alpha 12322 P11798 MudPIT
RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Camk2a calcium/calmodulin-dependent protein kinase II alpha 12322 P11798 MudPIT
RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Camk2g calcium/calmodulin-dependent protein kinase II gamma 12325 Q923T9 MudPIT; IP/WB
Berg JM , et al. 2015
Clasp1 CLIP associating protein 1 76707 Q80TV8 MudPIT
Berg JM , et al. 2015
Clasp2 CLIP associating protein 2 76499 Q8BRT1 MudPIT; IP/WB
Berg JM , et al. 2015
Clip4 CAP-GLY domain containing linker protein family, member 4 78785 Q8CI96 MudPIT
Berg JM , et al. 2015
Dag1 dystroglycan 1 13138 Q62165 RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Dclk1 doublecortin-like kinase 1 13175 Q9JLM8 MudPIT
Berg JM , et al. 2015
Ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 13207 Q8BTS0 MudPIT; IP/WB
Berg JM , et al. 2015
Dlg4 Postsynaptic density protein 95 13385 Q62108 RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Dlgap4 discs, large homolog-associated protein 4 (Drosophila) 228836 B1AZP2 RNA immunoprecipitation (RIP)
Berg JM , et al. 2015
Eef1a1 eukaryotic translation elongation factor 1 alpha 1 13627 P10126 MudPIT
Berg JM , et al. 2015
Eef2 eukaryotic translation elongation factor 2 13629 P58252 MudPIT
Berg JM , et al. 2015
Fmr1 fragile X mental retardation 1 14265 P35922 IP/WB
Berg JM , et al. 2015
Glud1 14661 glutamate dehydrogenase 1 P26443 MudPIT
Berg JM , et al. 2015
Gnb2l1 guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 14694 P68040 MudPIT
Berg JM , et al. 2015
Gys1 glycogen synthase 1, muscle 14936 Q9Z1E4 MudPIT
Berg JM , et al. 2015
Hnrnpk heterogeneous nuclear ribonucleoprotein K 15387 P61979 MudPIT
Berg JM , et al. 2015
Hnrnpm heterogeneous nuclear ribonucleoprotein M 76936 Q9D0E1 MudPIT
Berg JM , et al. 2015
Igkv1-117 immunoglobulin kappa variable 1-117 16098 P01631 MudPIT
Berg JM , et al. 2015
Myo5a myosin VA 17918 Q99104 MudPIT
Berg JM , et al. 2015
Pabpc1 poly(A) binding protein, cytoplasmic 1 18458 P29341 MudPIT; IP/WB; Co-localization
Berg JM , et al. 2015
Plec plectin 18810 Q9QXS1 MudPIT
Berg JM , et al. 2015
Pura purine rich element binding protein A 19290 P42669 MudPIT
Berg JM , et al. 2015
Purb purine rich element binding protein B 19291 O35295 MudPIT
Berg JM , et al. 2015
Rpl10a ribosomal protein L10A 19896 P53026 IP/WB
Berg JM , et al. 2015
Rpl14 ribosomal protein L14 67115 Q9CR57 MudPIT
Berg JM , et al. 2015
Rpl5 ribosomal protein L5 100503670 P47962 MudPIT
Berg JM , et al. 2015
Rpl6 ribosomal protein L6 19988 P47911 MudPIT
Berg JM , et al. 2015
Rpl7 ribosomal protein L7 19989 P14148 MudPIT
Berg JM , et al. 2015
Rplp0 ribosomal protein, large, P0 11837 P14869 MudPIT
Berg JM , et al. 2015
Rps17 ribosomal protein S17 20068 P63276 MudPIT
Berg JM , et al. 2015
Rps3 ribosomal protein S3 27050 P62908 MudPIT
Berg JM , et al. 2015
Rps8 ribosomal protein S8 20116 P62242 MudPIT
Berg JM , et al. 2015
Rpsa ribosomal protein SA 16785 P14206 MudPIT
Berg JM , et al. 2015
Rufy3 RUN and FYVE domain containing 3 52822 Q9D394 MudPIT
Berg JM , et al. 2015
Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein 56403 Q3TRV3 MudPIT
Berg JM , et al. 2015
Try5 trypsin 5 103964 Q9QUK9 MudPIT
Berg JM , et al. 2015
Tuba4a tubulin, alpha 4A 22145 P68368 MudPIT
Berg JM , et al. 2015
Ywhag tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 22628 P61982 MudPIT
Berg JM , et al. 2015
Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 22629 P68510 MudPIT
Berg JM , et al. 2015

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