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Relevance to Autism

JMJD1C was originally hypothesized to be involved in autism based on a single case in which a patient with autism was found to have a de novo inversion which disrupted the JMJD1C gene (Castermans et al., 2007). A de novo double missense variant in JMJD1C was subquently identified in an ASD proband in Neale et al., 2012, and three additional missense variants in this gene were identified in ASD cases in Sez et al., 2016. De novo missense variants in JMJD1C were also identified in a patient with intellectual disability and a patient with Rett syndrome in Sez et al., 2016. Slavotinek et al., 2020 reported seven individuals with de novo JMJD1C variants; two of these individuals diangosed with ASD.

Molecular Function

histone demethylase, tumor suppressor

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Identification and characterization of the TRIP8 and REEP3 genes on chromosome 10q21.3 as novel candidate genes for autism.
ASD
Support
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Jumonji domain containing 1C (JMJD1C) sequence variants in seven patients with autism spectrum disorder, intellectual disability and seizures.
DD
ASD, ADHD, epilepsy/seizures
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ASD, ID, epilepsy/seizures
Highly Cited
Identification and characterization of TRIP8 gene in silico.
Recent Recommendation
A novel variant of the putative demethylase gene, s-JMJD1C, is a coactivator of the AR.
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Mutations in JMJD1C are involved in Rett syndrome and intellectual disability.
ASD, ID
Rett syndrome

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN139R001 
 translocation 
  
  
  
  
  
 GEN139R002 
 missense_variant 
 c.3487A>G 
 p.Ile1163Val 
 De novo 
  
 Simplex 
 GEN139R003 
 missense_variant 
 c.488C>T 
 p.Pro163Leu 
 De novo 
  
  
 GEN139R004 
 missense_variant 
 c.2830C>T 
 p.Pro944Ser 
 Unknown 
  
  
 GEN139R005 
 missense_variant 
 c.3308A>G 
 p.Asn1103Ser 
 Unknown 
  
  
 GEN139R006 
 missense_variant 
 c.3559A>G 
 p.Thr1187Ala 
 De novo 
  
  
 GEN139R007 
 missense_variant 
 c.3743A>G 
 p.Gln1248Arg 
 Unknown 
  
  
 GEN139R008 
 missense_variant 
 c.3982C>G 
 p.Arg1328Gly 
 Unknown 
  
  
 GEN139R009 
 missense_variant 
 c.6997A>G 
 p.Thr2333Ala 
 Unknown 
  
  
 GEN139R010 
 missense_variant 
 c.6410A>T 
 p.Glu2137Val 
 Unknown 
  
  
 GEN139R011 
 frameshift_variant 
 c.113dup 
 p.Met38IlefsTer6 
 De novo 
  
 Simplex 
 GEN139R012 
 missense_variant 
 c.5072A>G 
 p.Asn1691Ser 
 De novo 
  
  
 GEN139R013 
 frameshift_variant 
 c.2621_2661del 
 p.Ser874CysfsTer10 
 De novo 
  
 Multiplex 
 GEN139R014 
 splice_region_variant 
 c.5863-6T>G 
  
 De novo 
  
  
 GEN139R015 
 frameshift_variant 
 c.536_552del 
 p.Lys179ThrfsTer4 
 De novo 
  
  
 GEN139R016 
 missense_variant 
 c.1100T>C 
 p.Leu367Pro 
 De novo 
  
  
 GEN139R017 
 missense_variant 
 c.349G>A 
 p.Val117Ile 
 De novo 
  
  
 GEN139R018 
 frameshift_variant 
 c.-221del 
  
 Unknown 
  
  
 GEN139R019 
 stop_gained 
 c.6716G>A 
 p.Trp2239Ter 
 De novo 
  
 Multiplex 
 GEN139R020 
 missense_variant 
 c.1732A>G 
 p.Ser578Gly 
 De novo 
  
 Multiplex 
 GEN139R021 
 missense_variant 
 c.3182G>A 
 p.Ser1061Asn 
 De novo 
  
  
 GEN139R022 
 missense_variant 
 c.1675A>C 
 p.Lys559Gln 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Deletion
 1
 
10
Duplication
 1
 
10
Deletion
 2
 
10
Deletion
 1
 
10
Deletion-Duplication
 44
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
AR androgen receptor 367 P10275 Y2H; GST
Wolf SS , et al. 2007
CHD8 chromodomain helicase DNA binding protein 8 57680 Q9HCK8 ChIP-chip
Subtil-Rodrguez A , et al. 2013
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
MDC1 mediator of DNA-damage checkpoint 1 9656 A1Z5I9 Biochemical activity
Sez MA , et al. 2015
MECP2 methyl CpG binding protein 2 (Rett syndrome) 4204 P51608 IP/WB
Sez MA , et al. 2015
Thrb thyroid hormone receptor beta 24831 P18113 Y2H
Lee JW , et al. 1995
TOP3B topoisomerase (DNA) III beta 8940 O95985 HITS-CLIP
Xu D , et al. 2013
VHL von Hippel-Lindau tumor suppressor 7428 P40337 IP; MS
Ewing RM , et al. 2007
Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 13074 P27786 ChIP
Kim SM , et al. 2010
DPF3 D4, zinc and double PHD fingers, family 3 8110 Q92784 ChIP; qRT-PCR
Zeng L , et al. 2010
Sf1 splicing factor 1 22668 Q64213 IP/WB; Luciferase reporter assay
Kim SM , et al. 2010
Whsc1l1 Wolf-Hirschhorn syndrome candidate 1-like 1 (human) 234135 Q6P2L6 Affinity chromatography; IP/WB; GST
Kim SM , et al. 2010
MIB1 mindbomb E3 ubiquitin protein ligase 1 307594 D3ZUV2 Affinity chromatography; LC-MS/MS
Mertz J , et al. 2015

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