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Relevance to Autism

Two de novo missense variants in the IQGAP3 gene were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014; one of these missense variants was predicted in silico to be pathogenic. IQGAP3 was identified in Stessman et al. as one of eight genes showing a bias for autism versus intellectual disability (two one-tailed binomial tests, P<0.025 for either ASD or ID/DD cases) in a cohort of NDD cases.

Molecular Function

This gene encodes a protein of unknown function.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN874R001 
 missense_variant 
 c.259G>A 
 p.Asp87Asn 
 De novo 
  
 Simplex 
 GEN874R002 
 missense_variant 
 c.3763C>G 
 p.Gln1255Glu 
 De novo 
  
 Simplex 
 GEN874R003 
 frameshift_variant 
 c.3280del 
 p.Ser1094AlafsTer13 
 Familial 
 Maternal 
 Simplex 
 GEN874R004 
 missense_variant 
 c.3422C>T 
 p.Pro1141Leu 
 Familial 
 Paternal 
 Simplex 
 GEN874R005 
 missense_variant 
 c.2438G>A 
 p.Arg813His 
 Familial 
 Maternal 
 Simplex 
 GEN874R006 
 stop_gained 
 c.2170C>T 
 p.Gln724Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN874R007 
 stop_gained 
 c.658C>T 
 p.Arg220Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN874R008 
 synonymous_variant 
 c.4336C>A 
 p.Arg1446%3D 
 De novo 
  
  
 GEN874R009 
 missense_variant 
 c.845C>A 
 p.Ala282Asp 
 De novo 
  
 Multiplex 
 GEN874R010 
 missense_variant 
 c.644A>G 
 p.Asn215Ser 
 De novo 
  
  
 GEN874R011 
 splice_site_variant 
 c.3422+1G>A 
  
 Familial 
 Paternal 
 Multiplex 
 GEN874R012 
 splice_site_variant 
 c.3422+1G>A 
  
 Familial 
 Maternal 
 Multiplex (monozygotic twins) 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Duplication
 3
 

No Animal Model Data Available

 

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