INTS1
Homo sapiens
Gene Name: integrator complex subunit 1
Aliases: INT1, NET28
Chromosome No: 7
Chromosome Band: 7p22.3
Genetic Category: Syndromic-Rare single gene variant
Aliases: INT1, NET28
Chromosome No: 7
Chromosome Band: 7p22.3
Genetic Category: Syndromic-Rare single gene variant
Summary Statistics:
ASD Reports: 10
Recent Reports: 0
Annotated variants: 28
Associated CNVs: 8
Evidence score: 3
ASD Reports: 10
Recent Reports: 0
Annotated variants: 28
Associated CNVs: 8
Evidence score: 3
Associated Disorders: |
|
Relevance to Autism
Krall et al., 2019 reported five individuals, including two sib pairs, with biallelic variants in the INTS1 gene who presented with absent or severely limited speech, abnormal gait, hypotonia, cataracts, and dysmorphic features; three of these individuals were diagnosed with ASD, while a fourth individual presented with autistic features. Oegema et al., 2017 had previously described three unrelated individuals with the same homozygous truncating variant in the INTS1 gene who presented with similar features.
Molecular Function
INTS1 is a subunit of the Integrator complex, which associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A) and mediates 3-prime end processing of small nuclear RNAs U1 (RNU1) and U2 (RNU2).
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Biallelic sequence variants in INTS1 in patients with developmental delays, cataracts, and craniofacial anomalies.
DD
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Contribution of rare and common variants to intellectual disability in a sub-isolate of Northern Finland.
ID
Support
Human mutations in integrator complex subunits link transcriptome integrity to brain development.
DD
Epilepsy/seizures
Rare
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
GEN1056R001b
frameshift_variant
c.5398dup
p.Arg1800ProfsTer20
Familial
Multiplex
GEN1056R002a
missense_variant
c.5621C>T
p.Pro1874Leu
Familial
Both parents
Multiplex
GEN1056R003a
frameshift_variant
c.5290del
p.Leu1764CysfsTer16
Familial
Simplex
GEN1056R004a
stop_gained
c.5351C>A
p.Ser1784Ter
Familial
Both parents
Simplex
GEN1056R005a
stop_gained
c.5351C>A
p.Ser1784Ter
Familial
Both parents
Simplex
GEN1056R006a
stop_gained
c.5351C>A
p.Ser1784Ter
Familial
Both parents
Simplex
GEN1056R007a
missense_variant
c.3950A>G
p.Asp1317Gly
Familial
Both parents
Unknown
GEN1056R008
frameshift_variant
c.618_619del
p.Leu207GlyfsTer3
Familial
Maternal
Multiplex
GEN1056R025
splice_site_variant
c.3429+7_3429+22del
Familial
Paternal
Multiplex
Common
No Common Variants Available