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Relevance to Autism

A rare duplication in the ICA1 gene has been identified with ASD (Salyakina et al., 2011).

Molecular Function

This gene encodes a protein with an arfaptin homology domain that is found both in the cytosol and as membrane-bound form on the Golgi complex and immature secretory granules. This protein is believed to be an autoantigen in insulin-dependent diabetes mellitus and primary Sjogren's syndrome.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Copy number variants in extended autism spectrum disorder families reveal candidates potentially involved in autism risk.
ASD
ID
Support
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
ASD
ID
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Microduplications in an autism multiplex family narrow the region of susceptibility for developmental disorders on 15q24 and implicate 7p21.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Recent Recommendation
Comparative Analyses of Copy-Number Variation in Autism Spectrum Disorder and Schizophrenia Reveal Etiological Overlap and Biological Insights.
ASD, SCZ
Recent Recommendation
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN296R001 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN296R002 
 missense_variant 
 c.1328A>G 
 p.Gln443Arg 
 De novo 
  
 Simplex 
 GEN296R003 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN296R004 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN296R005 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN296R006 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN296R007 
 copy_number_gain 
  
  
 Unknown 
  
  
 GEN296R008 
 copy_number_gain 
  
  
 Unknown 
  
  
 GEN296R009 
 copy_number_gain 
  
  
 Unknown 
  
  
 GEN296R010 
 copy_number_gain 
  
  
 Unknown 
  
  
 GEN296R011 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN296R012 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN296R013 
 frameshift_variant 
 c.151del 
 p.Ala51ProfsTer10 
 Familial 
 Paternal 
 Simplex 
 GEN296R014 
 synonymous_variant 
 c.1494T>C 
 p.Asp498%3D 
 Unknown 
  
  
 GEN296R015 
 missense_variant 
 c.1042A>C 
 p.Thr348Pro 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion-Duplication
 30
 
7
Duplication
 4
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 2
 
7
Deletion
 2
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CCDC28A coiled-coil domain containing 28A 25901 Q8IWP9 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
CNTF ciliary neurotrophic factor 1270 P26441 LC-MS/MS
LC/ESI/MS/MS
Ewing RM , et al. 2007
EXOC5 exocyst complex component 5 10640 O00471 Y2H
Wang J , et al. 2011
ING5 inhibitor of growth family, member 5 84289 Q8WYH8 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
KRT33B keratin 33B 3884 Q14525 LC-MS/MS
LC/ESI/MS/MS
Ewing RM , et al. 2007
MBD3 methyl-CpG binding domain protein 3 53615 O95983 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
MKKS McKusick-Kaufman syndrome 8195 Q9NPJ1 LC-MS/MS
LC/ESI/MS/MS
Ewing RM , et al. 2007
PICK1 protein interacting with PRKCA 1 9463 Q9NRD5 IP; LC-MS/MS
Huttlin EL , et al. 2015
RAB2A RAB2A, member RAS oncogene family 5862 P61019 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
RAB2B RAB2B, member RAS oncogene family NM_001163380 B4DUD4 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
SHANK3 SH3 and multiple ankyrin repeat domains 3 85358 Q9BYB0 Y2H
Sakai Y , et al. 2011
STK16 serine/threonine kinase 16 8576 O75716 LC-MS/MS
LC/ESI/MS/MS
Ewing RM , et al. 2007
TSC1 tuberous sclerosis 1 7248 Q92574 Y2H
Sakai Y , et al. 2011
Pick1 protein interacting with PRKCA 1 84591 Q9EP80 IP/WB
He J , et al. 2015

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