AutDB - Autism Database

Gene
CNV
Animal Model
PIN

HOXA1

Homo sapiens

Gene Name: homeobox A1
Aliases: BSAS, HOX1, HOX1F, MGC45232
Chromosome No: 7
Chromosome Band: 7p15.2
Genetic Category: Genetic Association-Rare Single Gene variant, Genetic Association-Syndromic--Rare Single Gene variant
Associated Syndrome(s): Bosley-Salih-Alorainy syndrome

Summary Statistics:

ASD Reports: 16
Recent Reports: 4
Annotated variants: 22
Associated CNVs: 5
Evidence score: 3

Associated Disorders:

Summary
Sequence Variants

Relevance to Autism

Studies have found genetic association and rare variants in the HOXA1 gene that are identified with autism. Positive associations have been found in Caucasian and Chinese Han populations. However, several studies have found no association between HOXA1 and autism, including in Irish and Italian population samples, the South Carolina Autism Project cohort, the Collaborative Programs of Excellence in Autism cohort and in a meta-analysis of several studies combined. In addition, rare variants in the HOXA1 gene have been identified with Bosley-Salih-Alorainy syndrome (BSAS).

Molecular Function

The encoded protein is a transcription factor that plays a major role in brainstem and cranial morphogenesis.

External Links

References

Type

Title

Type of Disorder

Associated Disorders

Author, Year

Primary

Discovery of allelic variants of HOXA1 and HOXB1: genetic susceptibility to autism spectrum disorders.

ASD

Ingram JL , et al. 2000

Positive Association

Association between the HOXA1 A218G polymorphism and increased head circumference in patients with autism.

ASD

Conciatori M , et al. 2004

Negative Association

Lack of association of HOXA1 and HOXB1 mutations and autism in Sicilian (Italian) patients.

ASD

Romano V , et al. 2003

Negative Association

No association between HOXA1 and HOXB1 genes and autism spectrum disorders (ASD).

ASD

Talebizadeh Z , et al. 2002

Negative Association

No evidence for linkage of liability to autism to HOXA1 in a sample from the CPEA network.

ASD

Devlin B , et al. 2002

Negative Association

Lack of association between HoxA1 and HoxB1 gene variants and autism in 110 multiplex families.

ASD

Li J , et al. 2002

Negative Association

An integrated meta-analysis of two variants in HOXA1/HOXB1 and their effect on the risk of autism spectrum disorders.

ASD

Song RR , et al. 2011

Negative Association

No association between allelic variants of HOXA1/HOXB1 and autism.

ASD

Gallagher L , et al. 2003

Negative Association

The HOXA1 A218G polymorphism and autism: lack of association in white and black patients from the South Carolina Autism Project.

ASD

Collins JS , et al. 2003

Support

Integrating de novo and inherited variants in 42

ASD

Zhou X et al. 2022

Support

Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders.

ASD

Schaaf CP , et al. 2011

Highly Cited

Genetic interactions between Hoxa1 and Hoxb1 reveal new roles in regulation of early hindbrain patterning.

Studer M , et al. 1998

Recent Recommendation

Allelic variation within the putative autism spectrum disorder risk gene homeobox A1 and cerebellar maturation in typically developing children and...

Raznahan A , et al. 2012

Recent Recommendation

MicroRNA fingerprints during human megakaryocytopoiesis.

Garzon R , et al. 2006

Recent Recommendation

Polyhistidine tract expansions in HOXA1 result in intranuclear aggregation and increased cell death.

Paraguison RC , et al. 2005

Recent Recommendation

Homozygous HOXA1 mutations disrupt human brainstem, inner ear, cardiovascular and cognitive development.

Bosley-Salih-Alorainy syndrome

ID, ASD

Tischfield MA , et al. 2005

Rare

Variant ID

Variant Type

Allele Change

Residue Change

Inheritance Pattern

Inheritance Association

Family Type

Author, Year

GEN122R001

missense_variant

c.218A>G

p.His73Arg

Unknown

Ingram JL , et al. 2000

GEN122R002a

missense_variant

c.218A>G

p.His73Arg

Unknown

Ingram JL , et al. 2000

GEN122R003

inframe_deletion

del9

Familial

Paternal

Ingram JL , et al. 2000

GEN122R004a

frameshift_variant

c.174_175insC

p.Val59ArgfsTer119

Familial

Both parents

Multiplex

Tischfield MA , et al. 2005

GEN122R005a

stop_gained

c.174_175insC

p.Val59ArgfsTer119

Familial

Both parents

Multiplex

Tischfield MA , et al. 2005

GEN122R006a

stop_gained

c.174_175insC

p.Val59ArgfsTer119

Familial

Both parents

Multiplex

Tischfield MA , et al. 2005

GEN122R007a

frameshift_variant

c.174_175insC

p.Val59ArgfsTer119

Familial

Both parents

Simplex

Tischfield MA , et al. 2005

GEN122R008a

stop_gained

c.84C>G

p.Tyr28Ter

Familial

Both parents

Simplex

Tischfield MA , et al. 2005

GEN122R009a

stop_gained

c.76C>T

p.Arg26Ter

Familial

Both parents

Simplex

Tischfield MA , et al. 2005

GEN122R010

missense_variant

c.218A>G

p.His73Arg

Li J , et al. 2002

GEN122R011

missense_variant

c.183C>G

p.Ile61Met

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R012

inframe_deletion

c.213_215del

p.His74del

Familial (6 cases); de novo (2 cases); unknown (27 cases)

Simplex

Schaaf CP , et al. 2011

GEN122R013

inframe_insertion

c.193_194insCCA

p.His65delinsProAsn

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R014

inframe_insertion

c.193_194insCCACCA

p.His65delinsProThrAsn

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R015

inframe_deletion

c.207_215del

p.His72_His74del

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R016

frameshift_variant

c.972del

p.Ser325LeufsTer7

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R017

inframe_insertion

c.193_194insCCACCA

p.His65delinsProThrAsn

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R018

inframe_deletion

c.207_215del

p.His72_His74del

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R019

frameshift_variant

c.972del

p.Ser325LeufsTer7

Unknown

Simplex

Schaaf CP , et al. 2011

GEN122R020

missense_variant

c.691G>A

p.Ala231Thr

De novo

Multiplex

Zhou X et al. 2022

Common

Variant ID

Polymorphism

SNP ID

Allele Change

Residue Change

Population Origin

Population Stage

Author, Year

GEN122C001

missense_variant

rs10951154

c.218A>G

p.His73Arg

Caucasian

Discovery

Ingram JL , et al. 2000

GEN122C002

missense_variant

rs10951154

c.218A>G

p.His73Arg

Italian, Caucasian American

Replication

Conciatori M , et al. 2004

Chromosome

CNV Locus

CNV Type

# of studies

Animal Model

7p15.2-p15.1

Deletion

7p15.3-p14.3

Deletion

7p22.3-p14.1

Duplication

7p22.3-p14.2

Duplication

7p22.3-q36.3

Deletion

Hoxa1

Mus musculus

Gene Name: Homeobox A1
Aliases: ERA1; Hox-1.6; Hoxa1
Human Ortholog: HOXA1

Summary Statistics:

# of Reports: 2
# of Models: 3

Model Summary

Implication of the function of the Hox network during mouse embryogenesis.

References

Type

Title

Author, Year

Additional

Developmental defects of the ear, cranial nerves and hindbrain resulting from targeted disruption of the mouse homeobox gene Hox-1.6.

Chisaka O , et al. 1992

Primary

Disruption of the Hox-1.6 homeobox gene results in defects in a region corresponding to its rostral domain of expression.

Lufkin T , et al. 1991

Additional

Disruption of the Hox-1.6 homeobox gene results in defects in a region corresponding to its rostral domain of expression.

Lufkin T , et al. 1991

M_HOXA1_3_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted deletion of Hox-1.6 gene by insertion of neomycin-resistance gence into the homeobox domain.
Allele Type: Targeted (Knock Out)
Strain of Origin: C57B1/6
Genetic Background: Not Specified
ES Cell Line: CC1.2
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_HOXA1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted deletion between nucleotides -49 to +373 relative to the Hox-1.6 transcription initiation site.
Allele Type: Targeted (Knock Out)
Strain of Origin: C57B1/6
Genetic Background: Not Specified
ES Cell Line: D3
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_HOXA1_2_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Targeted deletion between nucleotides -49 to +373 relative to the Hox-1.6 transcription initiation site.
Allele Type: Targeted (Knock Out)
Strain of Origin: C57B1/6
Genetic Background: Not Specified
ES Cell Line: D3
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_HOXA1_3_KO_HM

M_HOXA1_1_KO_HM

M_HOXA1_2_KO_HT

Category

Entity

Quantity

Experimental Paradigm

Age at Testing

Developmental profile

General characteristics¹

No change

General observations

E8.5

Developmental profile

Mortality/lethality¹

No change

General observations

E3.5

Developmental profile

Vertebrae morphology¹

No change

Histology

E15.5

References: 1: Lufkin T , et al. 1991

Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

HOXA1

Homo sapiens

Gene Name: homeobox A1
Gene Aliases: BSAS; HOX1; HOX1F

Summary Statistics:

Total Interactions: 338
Total Publications: 15

Interactome
Interaction Table

Download HOXA1's Cytoscape file

Interactor Symbol	Interactor Name	Entrez ID	Uniprot ID	Evidence	Reference
ACK1	Activated CDC42 kinase 1	10188	Q07912	Luciferase reporter assay; IP/WB; qRT-PCR; Peptide microarray; ChIP	Mahajan K , et al. 2014
ADAMTSL4	ATP10A	54507	Q6UY14	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
ALG13	ALG13, UDP-N-acetylglucosaminyltransferase subunit	79868	Q9NP73	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
BLZF1	basic leucine zipper nuclear factor 1	8548	Q9H2G9	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
CCDC33	coiled-coil domain containing 33	80125	Q8N5R6	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
CHD8	chromodomain helicase DNA binding protein 8	57680	Q9HCK8	ChIP-chip	Subtil-Rodrguez A , et al. 2013
CHIC2	cysteine-rich hydrophobic domain 2	26511	Q9UKJ5	Y2H	Rual JF , et al. 2005
CHRD	chordin	8646	Q8N2W7	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
EFEMP2	EGF containing fibulin-like extracellular matrix protein 2	30008	O95967	Y2H	Rual JF , et al. 2005
FMR1	fragile X mental retardation 1	2332	G8JLE9	PAR-CLIP	Ascano M Jr , et al. 2012
GATA1	GATA binding protein 1 (globin transcription factor 1)	2623	P15976	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
GP9	glycoprotein IX (platelet)	2815	P14770	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
GRN	granulin	2896	P28799	Y2H	Rual JF , et al. 2005
GRN	granulin	2896	P28799	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
HOXA1	homeobox A1	3198	P49639	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KDM3A	lysine (K)-specific demethylase 3A	55818	Q9Y4C1	Gene microarray; qRT-PCR; ChIP Luciferase reporter assay; IP/WB; qRT-PCR; Peptide microarray; ChIP	Cho HS , et al. 2011
KDM5B	lysine (K)-specific demethylase 5B	10765	Q9UGL1	Phage display	Zhou W , et al. 2009
KRT31	keratin 31	3881	Q15323	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRT38	keratin 38, type I	8687	O76015	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRT40	keratin 40, type I	125115	Q6A162	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-1	keratin associated protein 10-1	386677	P60331	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-11	keratin associated protein 10-11	386678	P60411	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-3	keratin associated protein 10-3	386682	P60369	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-5	keratin associated protein 10-5	386680	P60370	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-8	keratin associated protein 10-8	386681	P60410	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP10-9	keratin associated protein 10-9	386676	P60411	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP12-1	keratin associated protein 12-1	353332	P59990	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP12-2	keratin associated protein 12-2	353323	P59991	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP12-4	keratin associated protein 12-4	386684	P60329	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP26-1	keratin associated protein 26-1	388818	Q6PEX3	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP3-2	keratin associated protein 3-2	83897	Q9BYR7	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP4-11	keratin associated protein 4-11	653240	Q9BYQ6	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP4-12	keratin associated protein 4-12	83755	Q9BQ66	Y2H	Rual JF , et al. 2005
KRTAP4-12	keratin associated protein 4-12	83755	Q9BQ66	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP4-2	keratin associated protein 4-2	85291	Q9BYR5	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP4-7	keratin associated protein 4-7	100132476	Q9BYR0	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP5-6	keratin associated protein 5-6	440023	Q6L8G9	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP5-9	keratin associated protein 5-9	3846	P26371	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP9-2	keratin associated protein 9-2	83899	Q9BYQ4	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
KRTAP9-4	keratin associated protein 9-4	85280	Q9BYQ2	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
LCE1B	late cornified envelope 1B	353132	Q5T7P3	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
LCE3E	late cornified envelope 3E	353145	Q5T5B0	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
LCE4A	late cornified envelope 4A	199834	Q5TA78	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
LGALS13	lectin, galactoside-binding, soluble, 13	29124	Q9UHV8	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
LPXN	leupaxin	9404	O60711	Y2H	Rual JF , et al. 2005
MDFI	MyoD family inhibitor	4188	Q99750	Y2H	Rual JF , et al. 2005
MGAT5B	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	146664	Q3V5L5	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
MIR10A	microRNA 10a	406902	N/A	Luciferase reporter assay; qRT-PCR	Garzon R , et al. 2006
N4BP2L2	NEDD4 binding protein 2-like 2	10443	Q92802	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
NOTCH2NL	notch 2 N-terminal like	388677	Q7Z3S9	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
PBX1	pre-B-cell leukemia homeobox 1	5087	P40424	EMSA; Luciferase reporter assay	Green NC , et al. 1998
PBX2	pre-B-cell leukemia homeobox 2	5089	P40425	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
PLSCR1	phospholipid scramblase 1	5359	O15162	Y2H	Rual JF , et al. 2005
RBPMS	RNA binding protein with multiple splicing	11030	Q93062	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
RGS17	regulator of G-protein signaling 17	26575	Q9UGC6	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
RGS20	regulator of G-protein signaling 20	8601	O76081	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
SDCBP	syndecan binding protein (syntenin)	6386	O00560	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
SPRY1	sprouty homolog 1, antagonist of FGF signaling (Drosophila)	NM_199327	O43609	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
TBC1D10C	TBC1 domain family, member 10C	374403	Q8IV04	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
TRAF1	TNF receptor-associated factor 1	7185	Q13077	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
TRAPPC6A	trafficking protein particle complex 6A	79090	O75865	Y2H	Rual JF , et al. 2005
TRIM42	tripartite motif containing 42	287015	Q8IWZ5	Y2H; bimolecular fluorescence complementation assay	Rolland T , et al. 2014
TRIP6	thyroid hormone receptor interactor 6	7205	Q15654	Y2H	Rual JF , et al. 2005
YAP	Transcriptional coactivator YAP1	10413	P46937	ChIP; qRT-PCR; Immunofluorescence; RNA-Seq	Liu M , et al. 2015
ZNF703	zinc finger protein 703	80139	Q9H7S9	IP; LC-MS/MS	Huttlin EL , et al. 2015
1700001C02Rik	RIKEN cDNA 1700001C02 gene	75434	Q9DAS2	Gene microarray	Makki N and Capecchi MR 2011
1700011H14Rik	RIKEN cDNA 1700011H14 gene	67082	Q9CPZ1	Gene microarray	Makki N and Capecchi MR 2011
1700025L06Rik	RIKEN cDNA 1700025L06 gene	66933	N/A	Gene microarray	Makki N and Capecchi MR 2011
1700100I10Rik	RIKEN cDNA 1700100I10 gene	74982	N/A	Gene microarray	Makki N and Capecchi MR 2011
2010003K15Rik	RIKEN cDNA 2010003K15 gene	100504474	J3QMJ4	Gene microarray	Makki N and Capecchi MR 2011
2310046K01Rik	RIKEN cDNA 2310046K01 gene	69698	Q9D6X5	Gene microarray	Makki N and Capecchi MR 2011
4930426D05Rik	RIKEN cDNA 4930426D05 gene	74644	Q9D5L2	Gene microarray	Makki N and Capecchi MR 2011
4930522N08Rik	RIKEN cDNA 4930522N08 gene	75094	N/A	Gene microarray	Makki N and Capecchi MR 2011
5730446D14Rik	RIKEN cDNA 5730446D14 gene	66640	N/A	Gene microarray	Makki N and Capecchi MR 2011
6330407J23Rik	RIKEN cDNA 6330407J23 gene	67412	Q6NZL0	Gene microarray	Makki N and Capecchi MR 2011
6430562O15Rik	RIKEN cDNA 6430562O15 gene	320893	N/A	Gene microarray	Makki N and Capecchi MR 2011
6720473M11Rik	RIKEN cDNA 6720473M11 gene	77900	N/A	Gene microarray	Makki N and Capecchi MR 2011
9.13E+15	uncharacterized 9130022E09	74564	N/A	Gene microarray	Makki N and Capecchi MR 2011
9130016M20Rik	RIKEN cDNA 9130016M20 gene	71620	N/A	Gene microarray	Makki N and Capecchi MR 2011
9330159F19Rik	RIKEN cDNA 9330159F19 gene	212448	D3Z623	Gene microarray	Makki N and Capecchi MR 2011
9330185C12Rik	RIKEN cDNA 9330185C12 gene	77511	N/A	Gene microarray	Makki N and Capecchi MR 2011
9430076C15Rik	RIKEN cDNA 9430076C15 gene	320189	N/A	Gene microarray	Makki N and Capecchi MR 2011
9530051E23Rik	RIKEN cDNA 9530051E23 gene	319699	N/A	Gene microarray	Makki N and Capecchi MR 2011
A930011O12Rik	RIKEN cDNA A930011O12 gene	268755	N/A	Gene microarray	Makki N and Capecchi MR 2011
A930038C07Rik	RIKEN cDNA A930038C07 gene	68169	Q8C119	Gene microarray	Makki N and Capecchi MR 2011
AADAC	arylacetamide deacetylase (esterase)	67758	Q99PG0	Gene microarray	Makki N and Capecchi MR 2011
ABCC2	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	12780	Q8VI47	Gene microarray	Makki N and Capecchi MR 2011
ABRA	actin-binding Rho activating protein	223513	Q8BUZ1	Gene microarray	Makki N and Capecchi MR 2011
ACTA2	actin, alpha 2, smooth muscle, aorta	11475	P62737	Gene microarray	Makki N and Capecchi MR 2011
ADAM12	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	11489	Q61824	Gene microarray	Makki N and Capecchi MR 2011
Adam5	a disintegrin and metallopeptidase domain 5	11499	Q3TTE0	Gene microarray	Makki N and Capecchi MR 2011
ADAMTS16	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	271127	Q69Z28	Gene microarray	Makki N and Capecchi MR 2011
Adh1	alcohol dehydrogenase 1 (class I)	11522	P00329	Gene microarray	Makki N and Capecchi MR 2011
ADORA2B	adenosine A2b receptor	11541	Q60614	Gene microarray	Makki N and Capecchi MR 2011
AFP	alpha fetoprotein	11576	P02772	Gene microarray	Makki N and Capecchi MR 2011
AI256396	EST AI256396	100503463	N/A	Gene microarray	Makki N and Capecchi MR 2011
AI317395	expressed sequence AI317395	215929	Q8VCV9	Gene microarray	Makki N and Capecchi MR 2011
ALDOB	aldolase B, fructose-bisphosphate	230163	Q91Y97	Gene microarray	Makki N and Capecchi MR 2011
ALPK2	alpha-kinase 2	225638	Q91ZB0	Gene microarray	Makki N and Capecchi MR 2011
AMDHD1	amidohydrolase domain containing 1	71761	Q9DBA8	Gene microarray	Makki N and Capecchi MR 2011
AMN	amnionless	93835	Q99JB7	Gene microarray	Makki N and Capecchi MR 2011
ANAPC1	anaphase promoting complex subunit 1	17222	P53995	Gene microarray	Makki N and Capecchi MR 2011
Ang2	angiogenin, ribonuclease A family, member 2	11731	Q64438	Gene microarray	Makki N and Capecchi MR 2011
Ang4	angiogenin, ribonuclease A family, member 4	219033	Q3TMQ6	Gene microarray	Makki N and Capecchi MR 2011
Ang6	angiogenin, ribonuclease A family, member 6	630952	Q5GAN0	Gene microarray	Makki N and Capecchi MR 2011
ANKRD1	ankyrin repeat domain 1 (cardiac muscle)	107765	Q9CR42	Gene microarray	Makki N and Capecchi MR 2011
ANKS4B	ankyrin repeat and sterile alpha motif domain containing 4B	72074	Q8K3X6	Gene microarray	Makki N and Capecchi MR 2011
AP1S3	adaptor-related protein complex AP-1, sigma 3	252903	Q7TN05	Gene microarray	Makki N and Capecchi MR 2011
APOA1	apolipoprotein A-I	11806	Q00623	Gene microarray	Makki N and Capecchi MR 2011
APOA2	apolipoprotein A-II	11807	P09813	Gene microarray	Makki N and Capecchi MR 2011
APOB	apolipoprotein B	238055	N/A	Gene microarray	Makki N and Capecchi MR 2011
APOC2	apolipoprotein C-II	11813	Q05020	Gene microarray	Makki N and Capecchi MR 2011
APOC3	apolipoprotein C-III	11814	P33622	Gene microarray	Makki N and Capecchi MR 2011
Apol7a	apolipoprotein L 7a	75761	B2RT54	Gene microarray	Makki N and Capecchi MR 2011
APOM	apolipoprotein M	55938	Q9Z1R3	Gene microarray	Makki N and Capecchi MR 2011
AQP3	aquaporin 3	11828	Q8R2N1	Gene microarray	Makki N and Capecchi MR 2011
ARHGAP24	Rho GTPase activating protein 24	231532	Q8C4V1	Gene microarray	Makki N and Capecchi MR 2011
ASH2L	ash2 (absent, small, or homeotic)-like (Drosophila)	23808	Q91X20	ChIP	Kashyap V , et al. 2010
B230340J04Rik	RIKEN cDNA B230340J04 gene	320703	N/A	Gene microarray	Makki N and Capecchi MR 2011
BC002189	cDNA sequence BC002189	620316	N/A	Gene microarray	Makki N and Capecchi MR 2011
BC030500	cDNA sequence BC030500	234290	Q8K0R8	Gene microarray	Makki N and Capecchi MR 2011
BCL11A	B cell CLL/lymphoma 11A (zinc finger protein)	14025	Q9QYE3	Gene microarray	Makki N and Capecchi MR 2011
Bcl2a1b	B cell leukemia/lymphoma 2 related protein A1b	12045	Q497M6	Gene microarray	Makki N and Capecchi MR 2011
BST1	bone marrow stromal cell antigen 1	12182	Q64277	Gene microarray	Makki N and Capecchi MR 2011
BTLA	B and T lymphocyte associated	208154	Q7TSA3	Gene microarray	Makki N and Capecchi MR 2011
CABP7	calcium binding protein 7	192650	Q91ZM8	Gene microarray	Makki N and Capecchi MR 2011
Calm4	calmodulin 4	80796	Q9JM83	Gene microarray	Makki N and Capecchi MR 2011
CCDC54	coiled-coil domain containing 54	69339	Q9DAL3	Gene microarray	Makki N and Capecchi MR 2011
CD5L	CD5 antigen-like	11801	Q9QWK4	Gene microarray	Makki N and Capecchi MR 2011
CDC123	cell division cycle 123 homolog (S. cerevisiae)	98828	Q8CII2	Gene microarray	Makki N and Capecchi MR 2011
CDCP2	CUB domain containing protein 2	242603	Q8BQH6	Gene microarray	Makki N and Capecchi MR 2011
CDHR2	cadherin-related family member 2	268663	B9EJ32	Gene microarray	Makki N and Capecchi MR 2011
CDK2	cyclin-dependent kinase 2	12566	P97377	Gene microarray	Makki N and Capecchi MR 2011
CERS2	LAG1 homolog, ceramide synthase 2	76893	Q924Z4	M2H	Ravasi T , et al. 2010
CFB	complement factor B	14962	P04186	Gene microarray	Makki N and Capecchi MR 2011
CFI	complement component factor i	12630	Q61129	Gene microarray	Makki N and Capecchi MR 2011
CHDH	choline dehydrogenase	218865	Q8BJ64	Gene microarray	Makki N and Capecchi MR 2011
CHRNA5	cholinergic receptor, nicotinic, alpha polypeptide 5	110835	Q2MKA5	Gene microarray	Makki N and Capecchi MR 2011
CIDEC	cell death-inducing DFFA-like effector c	14311	P56198	Gene microarray	Makki N and Capecchi MR 2011
CLIC5	chloride intracellular channel 5	224796	Q8BXK9	Gene microarray	Makki N and Capecchi MR 2011
COLEC10	collectin sub-family member 10	239447	Q8CF98	Gene microarray	Makki N and Capecchi MR 2011
COPS2	COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	12848	P61202	Gene microarray	Makki N and Capecchi MR 2011
CREB3L3	cAMP responsive element binding protein 3-like 3	208677	Q91XE9	Gene microarray	Makki N and Capecchi MR 2011
CRIM1	cysteine rich transmembrane BMP regulator 1 (chordin like)	50766	Q9JLL0	Gene microarray	Makki N and Capecchi MR 2011
CRYBA2	crystallin, beta A2	12958	Q9JJV1	Gene microarray	Makki N and Capecchi MR 2011
CRYBB1	crystallin, beta B1	12960	Q9WVJ5	Gene microarray	Makki N and Capecchi MR 2011
Cryge	crystallin, gamma E	12968	Q03740	Gene microarray	Makki N and Capecchi MR 2011
CSRP3	cysteine and glycine-rich protein 3	13009	P50462	Gene microarray	Makki N and Capecchi MR 2011
CTSH	cathepsin H	13036	P49935	Gene microarray	Makki N and Capecchi MR 2011
CTXN3	cortexin 3	629147	Q8BXZ0	Gene microarray	Makki N and Capecchi MR 2011
CUBN	cubilin (intrinsic factor-cobalamin receptor)	65969	Q9JLB4	Gene microarray	Makki N and Capecchi MR 2011
CUL5	cullin 5	75717	Q9D5V5	Gene microarray	Makki N and Capecchi MR 2011
CXCL5	chemokine (C-X-C motif) ligand 5	20311	P50228	Gene microarray	Makki N and Capecchi MR 2011
CYP24A1	cytochrome P450, family 24, subfamily a, polypeptide 1	13081	Q64441	Gene microarray	Makki N and Capecchi MR 2011
Cyp3a13	cytochrome P450, family 3, subfamily a, polypeptide 13	13113	Q64464	Gene microarray	Makki N and Capecchi MR 2011
D10Bwg1379e	DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	215821	Q3UGY8	Gene microarray	Makki N and Capecchi MR 2011
DBX1	developing brain homeobox 1	13172	P52950	Gene microarray	Makki N and Capecchi MR 2011
DCN	decorin	13179	P28654	Gene microarray	Makki N and Capecchi MR 2011
DDX3Y	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	26900	Q62095	Gene microarray	Makki N and Capecchi MR 2011
DEDD	death effector domain-containing	21945	Q9Z1L3	Gene microarray	Makki N and Capecchi MR 2011
DEPDC5	DEP domain containing 5	277854	P61460	Gene microarray	Makki N and Capecchi MR 2011
DFNA5	deafness, autosomal dominant 5 (human)	54722	Q9Z2D3	Gene microarray	Makki N and Capecchi MR 2011
DMKN	dermokine	73712	Q6P253	Gene microarray	Makki N and Capecchi MR 2011
DNER	delta/notch-like EGF-related receptor	227325	Q8JZM4	Gene microarray	Makki N and Capecchi MR 2011
DOCK8	dedicator of cytokinesis 8	76088	Q8C147	Gene microarray	Makki N and Capecchi MR 2011
DSCR6	ripply3 homolog (zebrafish)	170765	Q924S9	Gene microarray	Makki N and Capecchi MR 2011
DYDC1	DPY30 domain containing 1	69496	Q9D9T0	Gene microarray	Makki N and Capecchi MR 2011
E030042N06Rik	RIKEN cDNA E030042N06 gene	319728	N/A	Gene microarray	Makki N and Capecchi MR 2011
Ear6	eosinophil-associated, ribonuclease A family, member 6	93719	Q923L7	Gene microarray	Makki N and Capecchi MR 2011
EDN2	endothelin 2	13615	P22389	Gene microarray	Makki N and Capecchi MR 2011
Eif2s3y	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	26908	Q9Z0N2	Gene microarray	Makki N and Capecchi MR 2011
Erv3	endogenous retroviral sequence 3	71995	Q9DAX3	Gene microarray	Makki N and Capecchi MR 2011
EXOC1	exocyst complex component 1	69940	Q8R3S6	Gene microarray	Makki N and Capecchi MR 2011
EXOC4	exocyst complex component 4	20336	O35382	Gene microarray	Makki N and Capecchi MR 2011
F2	coagulation factor II	14061	P19221	Gene microarray	Makki N and Capecchi MR 2011
FAM20B	family with sequence similarity 20, member B	215015	Q8VCS3	Gene microarray	Makki N and Capecchi MR 2011
FAM65C	family with sequence similarity 65, member C	69553	A1L3T7	Gene microarray	Makki N and Capecchi MR 2011
Fbxw21	F-box and WD-40 domain protein 21	320082	Q8BI38	Gene microarray	Makki N and Capecchi MR 2011
FEZF2	Fez family zinc finger 2	54713	Q9ESP5	Gene microarray	Makki N and Capecchi MR 2011
FGB	fibrinogen beta chain	110135	Q8K0E8	Gene microarray	Makki N and Capecchi MR 2011
FGFR3	fibroblast growth factor receptor 3	14184	Q61851	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011
FGG	fibrinogen gamma chain	99571	Q8VCM7	Gene microarray	Makki N and Capecchi MR 2011
FOXD3	forkhead box D3	15221	Q61060	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011
FZD8	frizzled homolog 8 (Drosophila)	14370	Q61091	Gene microarray	Makki N and Capecchi MR 2011
G2E3	G2/M-phase specific E3 ubiquitin ligase	217558	Q5RJY2	Gene microarray	Makki N and Capecchi MR 2011
GAB2	growth factor receptor bound protein 2-associated protein 2	14389	Q9Z1S8	Gene microarray	Makki N and Capecchi MR 2011
GABRG1	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	14405	Q9R0Y8	Gene microarray	Makki N and Capecchi MR 2011
GDA	guanine deaminase	14544	Q9R111	Gene microarray	Makki N and Capecchi MR 2011
Gm15623	predicted gene 15623	100040211	N/A	Gene microarray	Makki N and Capecchi MR 2011
Gm9961	predicted gene 9961	791359	N/A	Gene microarray	Makki N and Capecchi MR 2011
GPR171	G protein-coupled receptor 171	229323	Q8BG55	Gene microarray	Makki N and Capecchi MR 2011
GUCA2A	guanylate cyclase activator 2a (guanylin)	14915	P33680	Gene microarray	Makki N and Capecchi MR 2011
Gzmf	granzyme F	14943	P08883	Gene microarray	Makki N and Capecchi MR 2011
HAVCR1	hepatitis A virus cellular receptor 1	171283	Q5QNS5	Gene microarray	Makki N and Capecchi MR 2011
Hba-x	hemoglobin X, alpha-like embryonic chain in Hba complex	15126	P06467	Gene microarray	Makki N and Capecchi MR 2011
Hbb-bh1	hemoglobin Z, beta-like embryonic chain	15132	P04444	Gene microarray	Makki N and Capecchi MR 2011
HDAC1	Histone deacetylase 1	433759	O09106	ChIP; Fluorescence Polarization (FP)	Urvalek AM and Gudas LJ 2014
HDAC2	Histone deacetylase 2	15182	P70288	ChIP; Fluorescence Polarization (FP)	Urvalek AM and Gudas LJ 2014
HDAC3	Histone deacetylase 3		O88895	ChIP; Fluorescence Polarization (FP)	Urvalek AM and Gudas LJ 2014
HERC6	hect domain and RLD 6	67138	F2Z461	Gene microarray	Makki N and Capecchi MR 2011
HNF1B	HNF1 homeobox B	21410	P27889	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011
HNF4A	hepatic nuclear factor 4, alpha	15378	P49698	Gene microarray	Makki N and Capecchi MR 2011
HOXA1	homeobox A1	15394	P09022	Gene microarray	Makki N and Capecchi MR 2011
HOXA2	homeobox A2	15399	P31245	Gene microarray	Makki N and Capecchi MR 2011
HOXB1	homeobox B1	15407	P17919	Gene microarray	Makki N and Capecchi MR 2011
HOXD3	homeobox D3	15434	P09027	Gene microarray	Makki N and Capecchi MR 2011
HSPB7	heat shock protein family, member 7 (cardiovascular)	29818	P35385	Gene microarray	Makki N and Capecchi MR 2011
Ifi203	interferon activated gene 203	15950	O35368	Gene microarray	Makki N and Capecchi MR 2011
Ifi204	interferon activated gene 204	15951	P15092	Gene microarray	Makki N and Capecchi MR 2011
Ifi27l2b	interferon, alpha-inducible protein 27 like 2B	217845	Q8VC49	Gene microarray	Makki N and Capecchi MR 2011
IGFBP1	insulin-like growth factor binding protein 1	16006	P47876	Gene microarray	Makki N and Capecchi MR 2011
IGLL1	immunoglobulin lambda-like polypeptide 1	16136	P20764	Gene microarray	Makki N and Capecchi MR 2011
IL1R2	interleukin 1 receptor, type II	16178	P27931	Gene microarray	Makki N and Capecchi MR 2011
IL2RB	interleukin 2 receptor, beta chain	16185	P16297	Gene microarray	Makki N and Capecchi MR 2011
KBTBD2	kelch repeat and BTB (POZ) domain containing 2	210973	Q6ZPP6	Gene microarray	Makki N and Capecchi MR 2011
KCNJ1	potassium inwardly-rectifying channel, subfamily J, member 1	56379	O88335	Gene microarray	Makki N and Capecchi MR 2011
KCNJ8	potassium inwardly-rectifying channel, subfamily J, member 8	16523	P97794	Gene microarray	Makki N and Capecchi MR 2011
KDM5D	lysine (K)-specific demethylase 5D	20592	Q62240	Gene microarray	Makki N and Capecchi MR 2011
KLB	klotho beta	83379	Q99N32	Gene microarray	Makki N and Capecchi MR 2011
KLHL14	kelch-like 14 (Drosophila)	225266	Q69ZK5	Gene microarray	Makki N and Capecchi MR 2011
KRT15	keratin 15	16665	Q61414	Gene microarray	Makki N and Capecchi MR 2011
KRT23	keratin 23	94179	Q99PS0	Gene microarray	Makki N and Capecchi MR 2011
KRT5	keratin 5	110308	Q922U2	Gene microarray	Makki N and Capecchi MR 2011
LEFTY1	left right determination factor 1	13590	Q64280	Gene microarray	Makki N and Capecchi MR 2011
LEFTY2	left-right determination factor 2	320202	P57785	Gene microarray	Makki N and Capecchi MR 2011
LGALS2	lectin, galactose-binding, soluble 2	107753	Q9CQW5	Gene microarray	Makki N and Capecchi MR 2011
LGI2	leucine-rich repeat LGI family, member 2	246316	Q8K4Z0	Gene microarray	Makki N and Capecchi MR 2011
LHFPL1	lipoma HMGIC fusion partner-like 1	237091	Q80SV1	Gene microarray	Makki N and Capecchi MR 2011
LHX5	LIM homeobox protein 5	16873	P61375	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011
LOC433461	uncharacterized LOC433461	433461	N/A	Gene microarray	Makki N and Capecchi MR 2011
LRRC19	leucine rich repeat containing 19	100061	Q8BZT5	Gene microarray	Makki N and Capecchi MR 2011
LRRC39	leucine rich repeat containing 39	109245	Q8BGI7	Gene microarray	Makki N and Capecchi MR 2011
LRRC4	leucine rich repeat containing 4	192198	Q99PH1	Gene microarray	Makki N and Capecchi MR 2011
MAFB	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	16658	P54841	Gene microarray	Makki N and Capecchi MR 2011
MATN4	matrilin 4	17183	O89029	Gene microarray	Makki N and Capecchi MR 2011
MET	met proto-oncogene	17295	P16056	Gene microarray	Makki N and Capecchi MR 2011
MMS19	MMS19 (MET18 S. cerevisiae)	72199	Q9D071	Gene microarray	Makki N and Capecchi MR 2011
MPP6	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	56524	Q9JLB0	Gene microarray	Makki N and Capecchi MR 2011
MS4A4B	membrane-spanning 4-domains, subfamily A, member 4B	60361	Q9ES61	Gene microarray	Makki N and Capecchi MR 2011
MUC13	mucin 13, epithelial transmembrane	17063	P19467	Gene microarray	Makki N and Capecchi MR 2011
MUSK	muscle, skeletal, receptor tyrosine kinase	18198	Q61006	Gene microarray	Makki N and Capecchi MR 2011
MYBPC3	myosin binding protein C, cardiac	17868	O70468	Gene microarray	Makki N and Capecchi MR 2011
MYH4	myosin, heavy polypeptide 4, skeletal muscle	17884	Q5SX39	Gene microarray	Makki N and Capecchi MR 2011
MYO15B	myosin XVB	217328	N/A	Gene microarray	Makki N and Capecchi MR 2011
MYO1D	myosin ID	338367	Q5SYD0	Gene microarray	Makki N and Capecchi MR 2011
NCOA7	nuclear receptor coactivator 7	211329	Q6DFV7	Gene microarray	Makki N and Capecchi MR 2011
NDUFS5	NADH dehydrogenase (ubiquinone) Fe-S protein 5	595136	Q99LY9	Gene microarray	Makki N and Capecchi MR 2011
NEURL1B	neuralized homolog 1b (Drosophila)	240055	Q0MW30	Gene microarray	Makki N and Capecchi MR 2011
NMU	neuromedin U	56183	Q9QXK8	Gene microarray	Makki N and Capecchi MR 2011
NODAL	nodal	18119	P43021	Gene microarray	Makki N and Capecchi MR 2011
NPNT	nephronectin	114249	Q91V88	Gene microarray	Makki N and Capecchi MR 2011
NRK	Nik related kinase	27206	Q9R0G8	Gene microarray	Makki N and Capecchi MR 2011
Olfr1223	olfactory receptor 1223	258894	A3KGY4	Gene microarray	Makki N and Capecchi MR 2011
Olfr181	olfactory receptor 181	259001	Q8VGQ7	Gene microarray	Makki N and Capecchi MR 2011
Olfr350	olfactory receptor 350	258620	Q8VFP8	Gene microarray	Makki N and Capecchi MR 2011
Olfr476	olfactory receptor 476	258926	Q8VGI4	Gene microarray	Makki N and Capecchi MR 2011
Olfr732	olfactory receptor 732	258659	Q8VFT5	Gene microarray	Makki N and Capecchi MR 2011
Olfr830	olfactory receptor 830	258559	Q8VFJ5	Gene microarray	Makki N and Capecchi MR 2011
Olfr951	olfactory receptor 951	258046	Q9EQ94	Gene microarray	Makki N and Capecchi MR 2011
OLR1	oxidized low density lipoprotein (lectin-like) receptor 1	108078	Q9EQ09	Gene microarray	Makki N and Capecchi MR 2011
OPRK1	opioid receptor, kappa 1	18387	P33534	Gene microarray	Makki N and Capecchi MR 2011
OSMR	oncostatin M receptor	18414	O70458	Gene microarray	Makki N and Capecchi MR 2011
PAM	peptidylglycine alpha-amidating monooxygenase	18484	P97467	Gene microarray	Makki N and Capecchi MR 2011
PAPOLG	poly(A) polymerase gamma	216578	Q6PCL9	Gene microarray	Makki N and Capecchi MR 2011
PAX8	paired box gene 8	18510	Q00288	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011
PAX9	paired box gene 9	18511	P47242	M2H	Ravasi T , et al. 2010
PDE11A	phosphodiesterase 11A	241489	P0C1Q2	Gene microarray	Makki N and Capecchi MR 2011
PDE1C	phosphodiesterase 1C	18575	Q64338	Gene microarray	Makki N and Capecchi MR 2011
PGAP1	post-GPI attachment to proteins 1	241062	Q3UUQ7	Gene microarray	Makki N and Capecchi MR 2011
PIGY	phosphatidylinositol glycan anchor biosynthesis, class Y	66459	Q9D1C3	Gene microarray	Makki N and Capecchi MR 2011
PLA2G12B	phospholipase A2, group XIIB	69836	Q99P27	Gene microarray	Makki N and Capecchi MR 2011
PLSCR2	phospholipid scramblase 2	18828	Q9DCW2	Gene microarray	Makki N and Capecchi MR 2011
Prl2c3	prolactin family 2, subfamily c, member 3	18812	P18918	Gene microarray	Makki N and Capecchi MR 2011
Prl3d1	prolactin family 3, subfamily d, member 1	18775	P18121	Gene microarray	Makki N and Capecchi MR 2011
Prl4a1	prolactin family 4, subfamily a, member 1	19110	O35256	Gene microarray	Makki N and Capecchi MR 2011
Prl6a1	prolactin family 6, subfamily a, member 1	19111	O35257	Gene microarray	Makki N and Capecchi MR 2011
Prl7d1	prolactin family 7, subfamily d, member 1	18814	P04769	Gene microarray	Makki N and Capecchi MR 2011
PROCR	protein C receptor, endothelial	19124	Q64695	Gene microarray	Makki N and Capecchi MR 2011
PRR15	proline rich 15	78004	Q9D1T5	Gene microarray	Makki N and Capecchi MR 2011
PVRL4	poliovirus receptor-related 4	71740	Q8R007	Gene microarray	Makki N and Capecchi MR 2011
RARG	retinoic acid receptor, gamma	19411	P18911	ChIP; qRT-PCR; Gene microarray	Kashyap V , et al. 2010
RARRES1	retinoic acid receptor responder (tazarotene induced) 1	109222	J3QNI9	Gene microarray	Makki N and Capecchi MR 2011
RASGEF1C	RasGEF domain family, member 1C	74563	Q9D300	Gene microarray	Makki N and Capecchi MR 2011
RBMY1A1	RNA binding motif protein, Y chromosome, family 1, member A1	19657	O35698	Gene microarray	Makki N and Capecchi MR 2011
RBP4	retinol binding protein 4, plasma	19662	Q00724	Gene microarray	Makki N and Capecchi MR 2011
RETN	resistin	57264	Q99P87	Gene microarray	Makki N and Capecchi MR 2011
RGMB	RGM domain family, member B	68799	Q7TQ33	Gene microarray	Makki N and Capecchi MR 2011
RSAD2	radical S-adenosyl methionine domain containing 2	58185	Q8CBB9	Gene microarray	Makki N and Capecchi MR 2011
S100G	S100 calcium binding protein G	12309	P97816	Gene microarray	Makki N and Capecchi MR 2011
SEMA3C	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	20348	Q62181	Gene microarray	Makki N and Capecchi MR 2011
Serpinb1a	serine (or cysteine) peptidase inhibitor, clade B, member 1a	66222	Q9D154	Gene microarray	Makki N and Capecchi MR 2011
SERPIND1	serine (or cysteine) peptidase inhibitor, clade D, member 1	15160	P49182	Gene microarray	Makki N and Capecchi MR 2011
SGK3	serum/glucocorticoid regulated kinase 3	170755	Q9ERE3	Gene microarray	Makki N and Capecchi MR 2011
SHISA3	shisa homolog 3 (Xenopus laevis)	330096	Q3UPR0	Gene microarray	Makki N and Capecchi MR 2011
SLC14A1	solute carrier family 14 (urea transporter), member 1	108052	Q8VHL0	Gene microarray	Makki N and Capecchi MR 2011
SLC23A3	solute carrier family 23 (nucleobase transporters), member 3	22626	Q60850	Gene microarray	Makki N and Capecchi MR 2011
SLC2A2	solute carrier family 2 (facilitated glucose transporter), member 2	20526	P14246	Gene microarray	Makki N and Capecchi MR 2011
SLC4A7	solute carrier family 4, sodium bicarbonate cotransporter, member 7	218756	Q8BTY2	Gene microarray	Makki N and Capecchi MR 2011
SLC5A11	solute carrier family 5 (sodium/glucose cotransporter), member 11	233836	Q8K0E3	Gene microarray	Makki N and Capecchi MR 2011
SLC6A2	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	20538	O55192	Gene microarray	Makki N and Capecchi MR 2011
SLC7A8	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	50934	Q9QXW9	Gene microarray	Makki N and Capecchi MR 2011
SLITRK1	SLIT and NTRK-like family, member 1	76965	Q810C1	Gene microarray	Makki N and Capecchi MR 2011
SMO	smoothened homolog (Drosophila)	319757	P56726	Gene microarray	Makki N and Capecchi MR 2011
SOAT2	sterol O-acyltransferase 2	223920	O88908	Gene microarray	Makki N and Capecchi MR 2011
SORCS3	sortilin-related VPS10 domain containing receptor 3	66673	Q8VI51	Gene microarray	Makki N and Capecchi MR 2011
SOX6	SRY-box containing gene 6	20679	P40645	Gene microarray	Makki N and Capecchi MR 2011
SPP1	secreted phosphoprotein 1	20750	P10923	Gene microarray	Makki N and Capecchi MR 2011
SPP2	secreted phosphoprotein 2	75396	Q8K1I3	Gene microarray	Makki N and Capecchi MR 2011
SPRY4	sprouty homolog 4 (Drosophila)	24066	Q9WTP2	Gene microarray	Makki N and Capecchi MR 2011
SRRM3	serine/arginine repetitive matrix 3	58212	Q80WV7	Gene microarray	Makki N and Capecchi MR 2011
SSB	Sjogren syndrome antigen B	20823	P32067	Gene microarray	Makki N and Capecchi MR 2011
SYBU	syntabulin (syntaxin-interacting)	319613	Q8BHS8	Gene microarray	Makki N and Capecchi MR 2011
TBC1D23	TBC1 domain family, member 23	67581	Q8K0F1	Gene microarray	Makki N and Capecchi MR 2011
TBX15	T-box 15	21384	O70306	Gene microarray	Makki N and Capecchi MR 2011
TDH	L-threonine dehydrogenase	58865	Q8K3F7	Gene microarray	Makki N and Capecchi MR 2011
TFAP2B	transcription factor AP-2 beta	21419	Q61313	Gene microarray	Makki N and Capecchi MR 2011
TFCP2L1	transcription factor CP2-like 1	81879	Q3UNW5	Gene microarray	Makki N and Capecchi MR 2011
Timd2	T cell immunoglobulin and mucin domain containing 2	171284	Q8R183	Gene microarray	Makki N and Capecchi MR 2011
TINAG	tubulointerstitial nephritis antigen	26944	Q9WUR0	Gene microarray	Makki N and Capecchi MR 2011
TINAGL1	tubulointerstitial nephritis antigen-like 1	94242	Q99JR5	Gene microarray	Makki N and Capecchi MR 2011
TLL1	tolloid-like	21892	Q62381	Gene microarray	Makki N and Capecchi MR 2011
TMEM216	transmembrane protein 216	68642	Q9CQC4	Gene microarray	Makki N and Capecchi MR 2011
TMOD1	tropomodulin 1	21916	P49813	Gene microarray	Makki N and Capecchi MR 2011
TNFRSF11A	tumor necrosis factor receptor superfamily, member 11a	21934	O35305	Gene microarray	Makki N and Capecchi MR 2011
Trim30a	tripartite motif-containing 30A	20128	P15533	Gene microarray	Makki N and Capecchi MR 2011
TRIML1	tripartite motif family-like 1	244448	Q8BVP1	Gene microarray	Makki N and Capecchi MR 2011
TSHZ1	teashirt zinc finger family member 1	110796	Q5DTH5	Gene microarray	Makki N and Capecchi MR 2011
TTN	titin	22138	A2ASS6	Gene microarray	Makki N and Capecchi MR 2011
TTR	transthyretin	22139	P07309	Gene microarray	Makki N and Capecchi MR 2011
Ugt1a6b	UDP glucuronosyltransferase 1 family, polypeptide A6B	394435	K9J7B2	Gene microarray	Makki N and Capecchi MR 2011
UTY	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	22290	P79457	Gene microarray	Makki N and Capecchi MR 2011
VAV1	vav 1 oncogene	22324	P27870	Gene microarray	Makki N and Capecchi MR 2011
Vmn1r181	vomeronasal 1 receptor 181	404289	Q0P547	Gene microarray	Makki N and Capecchi MR 2011
Vmn1r82	vomeronasal 1 receptor 82	171268	Q8R283	Gene microarray	Makki N and Capecchi MR 2011
Wfdc6a	WAP four-disulfide core domain 6A	209351	Q3UW55	Gene microarray	Makki N and Capecchi MR 2011
WNT10B	wingless related MMTV integration site 10b	22410	P48614	Gene microarray	Makki N and Capecchi MR 2011
Zfp60	zinc finger protein 60	22718	P16374	Gene microarray	Makki N and Capecchi MR 2011
ZIC1	zinc finger protein of the cerebellum 1	22771	P46684	Gene microarray; qRT-PCR; in situ hybridization	Makki N and Capecchi MR 2011

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Relevance to Autism

Molecular Function

External Links

References

Rare

Common

External Links

Model Summary

References

M_HOXA1_3_KO_HM

M_HOXA1_1_KO_HM

M_HOXA1_2_KO_HT

M_HOXA1_3_KO_HM

M_HOXA1_1_KO_HM

M_HOXA1_2_KO_HT