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Relevance to Autism

Gillentine et al., 2021 reported 13 previously unpublished individuals with variants in the HNRNPK gene, including an ASD proband from the SPARK cohort; a total of five individuals from this cohort presented with autism spectrum disorder, including two individuals with de novo likely gene-disruptive (LGD) variants and two individuals with de novo missense variants with CADD scores greater than 20 in HNRNPK. A proband with a de novo HNRNPK missense variant from the Deciphering Developmental Disorders study that was originally described in Kaplanis et al., 2020 was subsequently reported in Gillentine et al., 2021 to also present with autism spectrum disorder.

Molecular Function

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene is located in the nucleoplasm and has three repeats of KH domains that binds to RNAs. It is distinct among other hnRNP proteins in its binding preference; it binds tenaciously to poly(C). This protein is also thought to have a role during cell cycle progession. Heterozygous mutations in the HNRNPK gene are responsible for Au-Kline syndrome (OMIM 616580), a neurodevelopmental disorder characterized by developmental delay and

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders
ASD, DD
Support
GeneMatcher aids in the identification of a new malformation syndrome with intellectual disability, unique facial dysmorphisms, and skeletal and connective tissue abnormalities caused by de novo varia
Au-Kline syndrome
DD, ID
Support
Okamoto syndrome has features overlapping with Au-Kline syndrome and is caused by HNRNPK mutation
Okamoto syndrome
DD, ID
Support
Phenotypic spectrum of Au-Kline syndrome: a report of six new cases and review of the literature
Au-Kline syndrome
DD
Support
A case of atypical Kabuki syndrome arising from a novel missense variant in HNRNPK
Au-Kline syndrome
DD
Support
Clinical spectrum of Kabuki-like syndrome caused by HNRNPK haploinsufficiency
Au-Kline syndrome
DD
Support
Evidence for 28 genetic disorders discovered by combining healthcare and research data
Developmental disorders
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Epilepsy/seizures
Support
Diagnostic utility of integrated analysis of exome and transcriptome: Successful diagnosis of Au-Kline syndrome in a patient with submucous cleft palate, scaphocephaly, and intellectual disabilities
Au-Kline syndrome
DD, ID
Support
A de novo frameshift in HNRNPK causing a Kabuki-like syndrome with nodular heterotopia
Au-Kline syndrome
DD
Support
A second case of Okamoto syndrome caused by HNRNPK mutation
Okamoto syndrome
DD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1247R001 
 missense_variant 
 c.443G>T 
 p.Arg148Met 
 De novo 
  
  
 GEN1247R002 
 splice_site_variant 
 c.331-502G>A 
  
 Unknown 
  
  
 GEN1247R003 
 missense_variant 
 c.1184C>T 
 p.Pro395Leu 
 Unknown 
  
  
 GEN1247R004 
 missense_variant 
 c.65G>A 
 p.Arg22His 
 Unknown 
  
  
 GEN1247R005 
 intron_variant 
 c.214-35A>G 
  
 De novo 
  
  
 GEN1247R006 
 frameshift_variant 
 c.99del 
 p.Phe33LeufsTer25 
 Unknown 
  
  
 GEN1247R007 
 missense_variant 
 c.253G>A 
 p.Glu85Lys 
 De novo 
  
  
 GEN1247R008 
 splice_region_variant 
 c.258-3C>T 
  
 Unknown 
  
  
 GEN1247R009 
 missense_variant 
 c.986C>T 
 p.Pro329Leu 
 De novo 
  
  
 GEN1247R010 
 missense_variant 
 c.989G>A 
 p.Gly330Glu 
 De novo 
  
  
 GEN1247R011 
 splice_site_variant 
 c.1036+1G>T 
  
 De novo 
  
  
 GEN1247R012 
 intron_variant 
 c.1109-13T>C 
  
 Unknown 
  
  
 GEN1247R013 
 frameshift_variant 
 c.1290-35_1290-34insAAAG 
  
 De novo 
  
  
 GEN1247R014 
 splice_site_variant 
 c.881+1dup 
  
 De novo 
  
 Simplex 
 GEN1247R015 
 missense_variant 
 c.257G>A 
 p.Arg86His 
 De novo 
  
 Multiplex 
 GEN1247R016 
 frameshift_variant 
 c.931_932insTT 
 p.Pro311LeufsTer40 
 De novo 
  
 Simplex 
 GEN1247R017 
 frameshift_variant 
 c.85dup 
 p.Glu29GlyfsTer6 
 De novo 
  
  
 GEN1247R018 
 missense_variant 
 c.176G>A 
 p.Gly59Glu 
 De novo 
  
  
 GEN1247R019 
 frameshift_variant 
 c.931_932insTT 
 p.Pro311LeufsTer40 
 De novo 
  
  
 GEN1247R020 
 frameshift_variant 
 c.926dup 
 p.Tyr309Ter 
 De novo 
  
 Simplex 
 GEN1247R021 
 missense_variant 
 c.464T>C 
 p.Leu155Pro 
 De novo 
  
 Simplex 
 GEN1247R022 
 splice_site_variant 
 c.936+1G>A 
  
 De novo 
  
  
 GEN1247R023 
 frameshift_variant 
 c.1009del 
 p.Val337LeufsTer13 
 De novo 
  
  
 GEN1247R024 
 stop_gained 
 c.859C>T 
 p.Arg287Ter 
 De novo 
  
  
 GEN1247R025 
 frameshift_variant 
 c.707dup 
 p.Asp238Ter 
 De novo 
  
  
 GEN1247R026 
 frameshift_variant 
 c.1022del 
 p.Gly341ValfsTer28 
 De novo 
  
  
 GEN1247R027 
 splice_site_variant 
 c.1289+1G>A 
  
 De novo 
  
  
 GEN1247R028 
 splice_site_variant 
 c.257+5G>A 
  
 De novo 
  
 Simplex 
 GEN1247R029 
 intron_variant 
 c.157-10T>G 
  
 De novo 
  
 Simplex 
 GEN1247R030 
 missense_variant 
 c.199G>C 
 p.Ala67Pro 
 De novo 
  
  
 GEN1247R031 
 missense_variant 
 c.253G>A 
 p.Glu85Lys 
 De novo 
  
  
 GEN1247R032 
 splice_region_variant 
 c.1192-3C>A 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 

No Animal Model Data Available

 

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