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Relevance to Autism

De novo missense variants in the HNRNPF gene have been observed in ASD probands from the Simons Simplex Collection and the MSSNG cohort (Iossifov et al., 2014; Yuen et al., 2017). A third missense variant in this gene was identified in a 17-year-old male from Baylor Genetics Laboratory (BGL) who presented with autism spectrum disorder, delayed speech and language development, and seizures (Gillentine et al., 2021).

Molecular Function

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs which have guanosine-rich sequences. This protein is very similar to the family member hnRPH.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders
ASD
DD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1246R001 
 missense_variant 
 c.142A>G 
 p.Thr48Ala 
 De novo 
  
 Simplex 
 GEN1246R002 
 missense_variant 
 c.634C>T 
 p.Arg212Trp 
 De novo 
  
 Simplex 
 GEN1246R003 
 missense_variant 
 c.703G>A 
 p.Ala235Thr 
 Unknown 
  
 Unknown 
 GEN1246R004 
 synonymous_variant 
 c.1185G>A 
 p.Gln395%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Deletion-Duplication
 14
 
10
Deletion
 1
 

No Animal Model Data Available

 

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