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Relevance to Autism

A de novo splice-site variant in the HNRNPD gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014). A de novo frameshift variant in this gene was subsequently identified in a proband from the 2017 Deciphering Developmental Disorders study; while the original report did not describe the clinical presentation of this proband, Gillentine et al., 2021 subsequently reported that he presented with autism spectrum disorder. Gillentine et al., 2021 reported ten previously unreported individuals with likely gene-disruptive (LGD) variants in HNRNPD, including an ASD proband from the SPARK cohort; in total, four of the novel patients in this report presented with autism spectrum disorder and had de novo LGD variants in HNRNPD.

Molecular Function

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are nucleic acid binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM domains that bind to RNAs. It localizes to both the nucleus and the cytoplasm. This protein is implicated in the regulation of mRNA stability.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
ADHD, DD, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Evidence for 28 genetic disorders discovered by combining healthcare and research data
Tall stature
Support
Prevalence and architecture of de novo mutations in developmental disorders
ASD
Recent Recommendation
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders
ASD, DD
ADHD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1245R001 
 splice_site_variant 
 c.*30+1G>A 
  
 De novo 
  
 Simplex 
 GEN1245R002 
 frameshift_variant 
 c.381_384del 
 p.Lys127AsnfsTer5 
 De novo 
  
  
 GEN1245R003 
 frameshift_variant 
 c.691del 
 p.Ser231ValfsTer5 
 De novo 
  
  
 GEN1245R004 
 frameshift_variant 
 c.332_333del 
 p.Lys111ArgfsTer11 
 De novo 
  
  
 GEN1245R005 
 stop_gained 
 c.103C>T 
 p.Gln35Ter 
 De novo 
  
  
 GEN1245R006 
 frameshift_variant 
 c.104_105del 
 p.Gln35ArgfsTer34 
 De novo 
  
  
 GEN1245R007 
 frameshift_variant 
 c.104_105del 
 p.Gln35ArgfsTer34 
 De novo 
  
  
 GEN1245R008 
 frameshift_variant 
 c.196del 
 p.Ala66ArgfsTer17 
 De novo 
  
  
 GEN1245R009 
 frameshift_variant 
 c.286del 
 p.Glu96AsnfsTer6 
 Unknown 
  
  
 GEN1245R010 
 frameshift_variant 
 c.303del 
 p.Phe101LeufsTer5 
 De novo 
  
  
 GEN1245R011 
 frameshift_variant 
 c.418del 
 p.Glu140AsnfsTer4 
 Unknown 
  
  
 GEN1245R012 
 frameshift_variant 
 c.417del 
 p.Glu140AsnfsTer4 
 Unknown 
  
  
 GEN1245R013 
 frameshift_variant 
 c.536_537del 
 p.Glu179AlafsTer3 
 Unknown 
  
  
 GEN1245R014 
 splice_site_variant 
 c.233+1919G>A 
  
 De novo 
  
  
 GEN1245R015 
 splice_region_variant 
 c.233+3_233+6del 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 2
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 3
 
4
Deletion
 1
 
4
Deletion
 1
 

No Animal Model Data Available

 

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