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Relevance to Autism

Association analysis of human leukocyte antigen (HLA) genes in a large dataset of 65,534 genotyped individuals consisting of controls and cases having one or more of autism spectrum disorder, ADHD, schizophrenia, bipolar disorder, depression, anorexia, or intellectual disability demonstrated a pronounced protective effect of the HLA-DPB1*1501 allele on susceptibility to autism (p = 0.0094, odds ratio = 0.72) and intellectual disability (p = 0.00099, odds ratio = 0.41), with an increased protective effect on a comorbid diagnosis of both disorders (p = 0.003, odds ratio = 0.29) (Nudel et al., 2019).

Molecular Function

HLA-DPB belongs to the HLA class II beta chain paralogues. This class II molecule is a heterodimer consisting of an alpha (DPA) and a beta chain (DPB), both anchored in the membrane. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. Class II molecules are expressed in antigen presenting cells (APC: B lymphocytes, dendritic cells, macrophages). The beta chain is approximately 26-28 kDa and its gene contains 6 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the two extracellular domains, exon 4 encodes the transmembrane domain and exon 5 encodes the cytoplasmic tail. Within the DP molecule both the alpha chain and the beta chain contain the polymorphisms specifying the peptide binding specificities, resulting in up to 4 different molecules.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders.
ASD, ID
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1086R001 
 frameshift_variant 
 c.390dup 
 p.Ser131LeufsTer47 
 Familial 
 Paternal 
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1086C001 
 allele 
  
  
  
 12,331 ASD cases and 19.645 controls from Denmark 
 Discovery 
 GEN1086C002 
 allele 
  
  
  
 3,175 ID cases and 19.645 controls from Denmark 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion-Duplication
 26
 

No Animal Model Data Available

 

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