HECTD4
Homo sapiens
Gene Name: HECT domain E3 ubiquitin protein ligase 4
Aliases: C12orf51, POTAGE
Chromosome No: 12
Chromosome Band: 12q24.13
Genetic Category: Rare single gene variant-Syndromic
Aliases: C12orf51, POTAGE
Chromosome No: 12
Chromosome Band: 12q24.13
Genetic Category: Rare single gene variant-Syndromic
Summary Statistics:
ASD Reports: 10
Recent Reports: 2
Annotated variants: 27
Associated CNVs: 3
Evidence score: 4
ASD Reports: 10
Recent Reports: 2
Annotated variants: 27
Associated CNVs: 3
Evidence score: 4
Associated Disorders: |
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Relevance to Autism
Two de novo variants in the HECTD4 gene (one nonsense, one missense) were identified in ASD probands from the Autism Sequencing Consortium in De Rubeis et al., 2014. Yuen et al., 2017 identified additional HECTD4 loss-of-function variants by whole genome sequencing in three ASD families. Despite being a mutation-intolerant gene with a pLI score of 1.00, HECTD4 did not meet the statistical significance criteria used in Yuen et al., 2017 to be designated as an ASD candidate gene, which was a higher-than-expected mutation rate (false discovery rate < 15%).
Molecular Function
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD, ID, epilepsy/seizures
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Recent Recommendation
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Biallelic variants in HECT E3 paralogs, HECTD4 and UBE3C, encoding ubiquitin ligases cause neurodevelopmental disorders that overlap with Angelman syndrome
DD, ID, epilepsy/seizures
ASD, stereotypy
Rare
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
GEN900R003
frameshift_variant
c.5712_5713insC
p.Glu1905ArgfsTer31
De novo
Multiplex
GEN900R008
inframe_deletion
c.11540_11542del
p.Phe3847del
De novo
Simplex
GEN900R012
non_coding_transcript_exon_variant
c.11651-29T>G
De novo
Simplex
GEN900R022a
stop_gained
c.5965C>T
p.Gln1989Ter
Familial
Both parents
Multiplex
GEN900R023a
frameshift_variant
c.4541del
p.Pro1514GlnfsTer11
Familial
Both parents
Simplex
Common
No Common Variants Available