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Relevance to Autism

Two de novo variants in the HECTD4 gene (one nonsense, one missense) were identified in ASD probands from the Autism Sequencing Consortium in De Rubeis et al., 2014. Yuen et al., 2017 identified additional HECTD4 loss-of-function variants by whole genome sequencing in three ASD families. Despite being a mutation-intolerant gene with a pLI score of 1.00, HECTD4 did not meet the statistical significance criteria used in Yuen et al., 2017 to be designated as an ASD candidate gene, which was a higher-than-expected mutation rate (false discovery rate < 15%).

Molecular Function

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD, ID, epilepsy/seizures
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Recent Recommendation
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Biallelic variants in HECT E3 paralogs, HECTD4 and UBE3C, encoding ubiquitin ligases cause neurodevelopmental disorders that overlap with Angelman syndrome
DD, ID, epilepsy/seizures
ASD, stereotypy

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN900R001 
 stop_gained 
 c.11062C>T 
 p.Gln3688Ter 
 De novo 
  
  
 GEN900R002 
 missense_variant 
 c.12743G>A 
 p.Arg4248His 
 De novo 
  
  
 GEN900R003 
 frameshift_variant 
 c.5712_5713insC 
 p.Glu1905ArgfsTer31 
 De novo 
  
 Multiplex 
 GEN900R004 
 stop_gained 
  
 p.Ser2668Ter 
 Unknown 
  
 Simplex 
 GEN900R005 
 frameshift_variant 
  
 p.Pro1010fs 
 Familial 
 Paternal 
 Simplex 
 GEN900R006 
 stop_gained 
 c.8011G>T 
 p.Glu2671Ter 
 De novo 
  
  
 GEN900R007 
 missense_variant 
 c.4604C>A 
 p.Ala1535Asp 
 Unknown 
  
 Simplex 
 GEN900R008 
 inframe_deletion 
 c.11540_11542del 
 p.Phe3847del 
 De novo 
  
 Simplex 
 GEN900R009 
 missense_variant 
 c.1741C>G 
 p.Gln581Glu 
 De novo 
  
 Simplex 
 GEN900R010 
 intron_variant 
 c.6835-20C>G 
  
 De novo 
  
 Simplex 
 GEN900R011 
 intron_variant 
 c.4389+44C>T 
  
 De novo 
  
 Simplex 
 GEN900R012 
 non_coding_transcript_exon_variant 
 c.11651-29T>G 
  
 De novo 
  
 Simplex 
 GEN900R013 
 frameshift_variant 
 c.9322+1dup 
  
 Familial 
 Maternal 
 Simplex 
 GEN900R014a 
 stop_gained 
 c.2230C>T 
 p.Arg744Ter 
 Familial 
 Both parents 
 Simplex 
 GEN900R015 
 stop_gained 
 c.2876T>A 
 p.Leu959Ter 
 Unknown 
  
  
 GEN900R016 
 missense_variant 
 c.12524C>T 
 p.Ala4175Val 
 De novo 
  
 Simplex 
 GEN900R017 
 synonymous_variant 
 c.8676G>A 
 p.Leu2892%3D 
 De novo 
  
 Simplex 
 GEN900R018 
 missense_variant 
 c.5990T>A 
 p.Met1997Lys 
 De novo 
  
 Simplex 
 GEN900R019 
 stop_gained 
 c.9660C>A 
 p.Ala3220%3D 
 De novo 
  
  
 GEN900R020 
 missense_variant 
 c.3523C>G 
 p.Arg1175Gly 
 De novo 
  
  
 GEN900R021 
 stop_gained 
 c.8443G>T 
 p.Glu2815Ter 
 De novo 
  
 Simplex 
 GEN900R022a 
 stop_gained 
 c.5965C>T 
 p.Gln1989Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN900R023a 
 frameshift_variant 
 c.4541del 
 p.Pro1514GlnfsTer11 
 Familial 
 Both parents 
 Simplex 
 GEN900R024a 
 missense_variant 
 c.6824C>G 
 p.Thr2275Arg 
 Familial 
  
 Simplex 
 GEN900R024b 
 missense_variant 
 c.10249C>T 
 p.His3417Tyr 
 Familial 
  
 Simplex 
 GEN900R025a 
 missense_variant 
 c.11992G>A 
 p.Val3998Met 
 Familial 
  
 Multiplex 
 GEN900R025b 
 missense_variant 
 c.5449C>T 
 p.Leu1817Phe 
 Familial 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 1
 
12
Deletion
 7
 

No Animal Model Data Available

No PIN Data Available
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