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Relevance to Autism

Mutations in the HDAC8 gene are responsible for a form of Cornelia de Lange syndrome (Cornelia de Lange syndrome-5; OMIM 300882) (Deardorff et al., 2012; Harakalova et al., 2012; Kaiser et al., 2014; Ansari et al., 2014). A comparison of the primary clinical findings in individuals with molecularly confirmed Cornelia de Lange syndrome in Kline et al., 2018 determined that 20-49% of individuals with HDAC8 mutations presented with autism spectrum disorder. An X-chromosome-wide association study of 6,873 individuals with autism from MSSNG, SSC, and SPARK (5,639 males and 1,234 females) and 8,981 controls (3,911 males and 5,070 females) in Mendes et al., 2025 identified three intronic SNPs in the HDAC8 gene that reached the significance threshold for association in meta-XWAS and both-XWAS analyses; furthermore, rare predicted damaging SNVs (<0.1% frequency in gnomAD) in the HDAC8 gene were found to have a higher frequency in ASD cases (male, female, and both sexes) from MSSNG, SSC, and SPARK compared to other family members in this report.

Molecular Function

The protein encoded by this gene belongs to class I of the histone deacetylase family. It catalyzes the deacetylation of lysine residues in the histone N-terminal tails and represses transcription in large multiprotein complexes with transcriptional co-repressors.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.
Cornelia de Lange syndrome-5 (CDLS5)
Support
Functional relationships between recessive inherited genes and genes with de novo variants in autism spectrum disorder
ASD
Support
Elucidation of the phenotypic spectrum and genetic landscape in primary and secondary microcephaly.
Microcephaly
ID, speech delay
Support
Comparison of first-tier whole-exome sequencing with a multi-step traditional approach for diagnosing paediatric outpatients: An Italian prospective study
Cornelia de Lange syndrome 5
Support
Genetic heterogeneity in Cornelia de Lange syndrome (CdLS) and CdLS-like phenotypes with observed and predicted levels of mosaicism.
Cornelia de Lange syndrome-5 (CDLS5)
Support
Loss-of-function HDAC8 mutations cause a phenotypic spectrum of Cornelia de Lange syndrome-like features, ocular hypertelorism, large fontanelle an...
Cornelia de Lange syndrome-5 (CDLS5)
Support
X-exome sequencing identifies a HDAC8 variant in a large pedigree with X-linked intellectual disability, truncal obesity, gynaecomastia, hypogonadi...
Cornelia de Lange syndrome-5 (CDLS5)
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
Genetic and phenotypic analysis of 101 patients with developmental delay or intellectual disability using whole-exome sequencing
DD
Recent Recommendation
Chromosome X-wide common variant association study in autism spectrum disorder
ASD
Recent Recommendation
Diagnosis and management of Cornelia de Lange syndrome: first international consensus statement.
Cornelia de Lange syndrome-5 (CDLS5)

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1024R001 
 stop_gained 
 c.522C>A 
 p.Tyr174Ter 
 De novo 
  
 Simplex 
 GEN1024R002 
 frameshift_variant 
 c.482del 
 p.Tyr161SerfsTer18 
 Familial 
 Maternal 
 Simplex 
 GEN1024R003 
 stop_gained 
 c.675C>G 
 p.Tyr225Ter 
 De novo 
  
 Unknown 
 GEN1024R004 
 missense_variant 
 c.471T>G 
 p.Asp157Glu 
 De novo 
  
 Simplex 
 GEN1024R005 
 missense_variant 
 c.932C>T 
 p.Thr311Met 
 De novo 
  
 Simplex 
 GEN1024R006 
 missense_variant 
 c.1075C>T 
 p.Pro359Ser 
 De novo 
  
 Simplex 
 GEN1024R007 
 missense_variant 
 c.697G>T 
 p.Asp233Tyr 
 De novo 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1024C001 
 intron_variant 
 rs73218354 
 c.1006-52266C>A 
  
 6,873 individuals with autism from MSSNG, SSC, and SPARK (5,639 males and 1,234 females) and 8,981 controls (3,911 males and 5,070 females) 
 Discovery 
 GEN1024C002 
 intron_variant 
 rs73218356 
 c.1005+52717G>A 
  
 6,873 individuals with autism from MSSNG, SSC, and SPARK (5,639 males and 1,234 females) and 8,981 controls (3,911 males and 5,070 females) 
 Discovery 
 GEN1024C003 
 intron_variant 
 rs5958792 
 c.1005+24590C>T 
  
 6,873 individuals with autism from MSSNG, SSC, and SPARK (5,639 males and 1,234 females) and 8,981 controls (3,911 males and 5,070 females) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion
 1
 
X
Duplication
 1
 
X
Deletion
 1
 
X
Deletion-Duplication
 22
 
X
Deletion
 2
 
X
Duplication
 2
 
X
Duplication
 1
 
X
Deletion-Duplication
 16
 
X
Duplication
 1
 

No Animal Model Data Available

 

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