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Relevance to Autism

A missense/3'UTR variant in the GRM1 gene (rs6923492) associated with ASD in a discovery cohort of 446 German ASD families; however, this association failed to replicate in a combined meta-analysis using a subsample of the Autism Genome Project and a French case/control cohort in addition to the original German discovery cohort (Waltes et al., 2014).

Molecular Function

G-protein coupled receptor for glutamate. Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors. Signaling activates a phosphatidylinositol-calcium second messenger system. May participate in the central action of glutamate in the CNS, such as long-term potentiation in the hippocampus and long-term depression in the cerebellum. Defects in this gene are associated with spinocerebellar ataxia, autosomal recessive, 13 (SCAR13) [MIM:614831], and variants in this gene are associated with schizophrenia, bipolar disorder, and depression.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Common variants in genes of the postsynaptic FMRP signalling pathway are risk factors for autism spectrum disorders.
ASD
Positive Association
Polymorphisms within the metabotropic glutamate receptor 1 gene are associated with depression phenotypes.
UPD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
Deleterious GRM1 mutations in schizophrenia.
SCZ
Support
Clustered coding variants in the glutamate receptor complexes of individuals with schizophrenia and bipolar disorder.
SCZ, BPD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD, hypotonia

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN593R001 
 synonymous_variant 
 c.1779C>A 
 p.Ser593= 
 De novo 
  
 Unknown 
 GEN593R002 
 complex_structural_alteration 
  
  
 De novo 
  
  
 GEN593R003 
 synonymous_variant 
 c.1455G>A 
 p.Gln485%3D 
 Unknown 
  
  
 GEN593R004 
 missense_variant 
 c.1711C>T 
 p.Pro571Ser 
 Unknown 
  
  
 GEN593R005 
 missense_variant 
 c.88G>T 
 p.Ala30Ser 
 De novo 
  
  
 GEN593R006 
 synonymous_variant 
 c.1488C>T 
 p.His496%3D 
 De novo 
  
  
 GEN593R007 
 missense_variant 
 c.2525C>T 
 p.Pro842Leu 
 De novo 
  
  
 GEN593R008 
 missense_variant 
 c.3457G>T 
 p.Asp1153Tyr 
 De novo 
  
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN593C001 
 intron_variant, missense_variant, 3_prime_UTR_variant 
 rs6923492 
 c.2977T>C;c.*341T>C;c.*306T>C;c.*215T>C;c.2797+180T>C 
 p.Ser993Pro 
 Discovery cohort: 446 German ASD families (442 trios/4 duos); replication cohorts: Strict/European subsample from AGP (1466 trios) and French case/control sample (541 cases/366 controls) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Duplication
 1
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 11
 

No Animal Model Data Available

 

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