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Relevance to Autism

A de novo nonsense variant in the GRIA2 gene was observed in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014, while a de novo missense variant in GRIA2 was observed in an ASD proband from a multiplex family from the ASD: Genomes to Outcome Study cohort in Yuen et al., 2017. Salpietro et al., 2019 reported heterozygous de novo GRIA2 variants in 28 unrelated patients with intellectual disability and neurodevelopmental abnormalities including autism spectrum disorder (ASD), Rett syndrome-like features, and seizures or developmental epileptic encephalopathy (DDE).

Molecular Function

This gene encodes a receptor for glutamate that functions as a ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. This gene product belongs to a family of glutamate receptors that are sensitive to alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Expansion of the GRIA2 phenotypic representation: a novel de novo loss of function mutation in a case with childhood onset schizophrenia
ADHD, SCZ, OCD, DD
Stereotypy
Support
Novel GRIA2 variant in a patient with atypical autism spectrum disorder and psychiatric symptoms: a case report
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
De novo missense mutation in GRIA2 in a patient with global developmental delay
ASD, DD, ID, epilepsy/seizures
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Case Report: A Novel De Novo Missense Mutation of the GRIA2 Gene in a Chinese Case of Neurodevelopmental Disorder With Language Impairment
DD
Stereotypy
Support
ASD, DD
Recent Recommendation
AMPA receptor GluA2 subunit defects are a cause of neurodevelopmental disorders.
DD, ID
ASD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1093R001 
 stop_gained 
 c.967C>T 
 p.Arg323Ter 
 De novo 
  
  
 GEN1093R002 
 missense_variant 
 c.345C>G 
 p.Ser115Arg 
 De novo 
  
 Multiplex 
 GEN1093R003 
 missense_variant 
 c.2363G>T 
 p.Trp788Leu 
 De novo 
  
  
 GEN1093R004 
 inframe_deletion 
 c.1582_1590del 
 p.Pro528_Lys530del 
 De novo 
  
  
 GEN1093R005 
 missense_variant 
 c.1831G>A 
 p.Asp611Asn 
 De novo 
  
  
 GEN1093R006 
 missense_variant 
 c.1825G>A 
 p.Gly609Arg 
 De novo 
  
  
 GEN1093R007 
 missense_variant 
 c.905A>G 
 p.Asp302Gly 
 De novo 
  
  
 GEN1093R008 
 missense_variant 
 c.2375G>T 
 p.Gly792Val 
 De novo 
  
  
 GEN1093R009 
 missense_variant 
 c.1819C>G 
 p.Arg607Gly 
 De novo 
  
  
 GEN1093R010 
 splice_site_variant 
 c.88+2T>C 
  
 De novo 
  
  
 GEN1093R011 
 missense_variant 
 c.1582C>A 
 p.Pro528Thr 
 De novo 
  
  
 GEN1093R012 
 frameshift_variant 
 c.1785del 
 p.Phe595LeufsTer37 
 De novo 
  
  
 GEN1093R013 
 splice_site_variant 
 c.1844+1G>A 
  
 De novo 
  
  
 GEN1093R014 
 frameshift_variant 
 c.857del 
 p.Pro286LeufsTer14 
 De novo 
  
  
 GEN1093R015 
 missense_variant 
 c.1937C>A 
 p.Thr646Asn 
 De novo 
  
  
 GEN1093R016 
 missense_variant 
 c.1932C>A 
 p.Phe644Leu 
 De novo 
  
  
 GEN1093R017 
 missense_variant 
 c.140G>A 
 p.Gly47Glu 
 De novo 
  
 Simplex 
 GEN1093R018 
 missense_variant 
 c.1939G>C 
 p.Val647Leu 
 De novo 
  
  
 GEN1093R019 
 missense_variant 
 c.1915G>T 
 p.Ala639Ser 
 De novo 
  
  
 GEN1093R020 
 missense_variant 
 c.1939G>C 
 p.Val647Leu 
 De novo 
  
  
 GEN1093R021 
 stop_gained 
 c.967C>T 
 p.Arg323Ter 
 De novo 
  
 Simplex 
 GEN1093R022 
 missense_variant 
 c.1915G>T 
 p.Ala639Ser 
 De novo 
  
  
 GEN1093R023 
 missense_variant 
 c.1939G>C 
 p.Val647Leu 
 De novo 
  
  
 GEN1093R024 
 missense_variant 
 c.2435A>G 
 p.Asn812Ser 
 De novo 
  
  
 GEN1093R025 
 missense_variant 
 c.2328G>T 
 p.Glu776Asp 
 De novo 
  
  
 GEN1093R026 
 missense_variant 
 c.1939G>C 
 p.Val647Leu 
 De novo 
  
  
 GEN1093R027 
 missense_variant 
 c.2420C>T 
 p.Ala807Val 
 De novo 
  
  
 GEN1093R028 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1093R029 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1093R030 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1093R031 
 missense_variant 
 c.2328G>T 
 p.Glu776Asp 
 De novo 
  
 Simplex 
 GEN1093R032 
 missense_variant 
 c.345C>G 
 p.Ser115Arg 
 De novo 
  
 Multiplex 
 GEN1093R033 
 synonymous_variant 
 c.651C>T 
 p.Asn217= 
 De novo 
  
 Simplex 
 GEN1093R034 
 stop_gained 
 c.1522G>T 
 p.Glu508Ter 
 De novo 
  
 Simplex 
 GEN1093R035 
 missense_variant 
 c.1934T>G 
 p.Leu645Arg 
 De novo 
  
 Simplex 
 GEN1093R036 
 missense_variant 
 c.688G>A 
 p.Val230Ile 
 Unknown 
  
  
 GEN1093R037 
 synonymous_variant 
 c.312C>T 
 p.Cys104%3D 
 Unknown 
  
  
 GEN1093R038 
 missense_variant 
 c.1589A>T 
 p.Lys530Met 
 De novo 
  
  
 GEN1093R039 
 missense_variant 
 c.317C>G 
 p.Thr106Arg 
 De novo 
  
 Simplex 
 GEN1093R040 
 splice_region_variant 
 c.1474-3C>G 
  
 De novo 
  
  
 GEN1093R041 
 frameshift_variant 
 c.1650del 
 p.Ile550MetfsTer10 
 De novo 
  
  
 GEN1093R042 
 missense_variant 
 c.2308G>A 
 p.Ala770Thr 
 De novo 
  
 Simplex 
 GEN1093R043 
 stop_gained 
 c.699C>A 
 p.Tyr233Ter 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Duplication
 1
 
4
Duplication
 1
 
4
Duplication
 1
 
4
Duplication
 1
 
4
Duplication
 2
 
4
Deletion
 1
 
4
Deletion-Duplication
 17
 
4
Duplication
 1
 

Model Summary

PKC phosphorylation of GluR2 Ser880 is a critical event in the induction of cerebellar LTD.

References

Type
Title
Author, Year
Primary
Requirement of AMPA receptor GluR2 phosphorylation for cerebellar long-term depression.

M_GRIA2_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted delection of Gria2 subunit.
Allele Type: Targeted (Knock Out)
Strain of Origin: Not Specified
Genetic Background: Not Specified
ES Cell Line: Not Specified
Mutant ES Cell Line: Not Specified
Model Source: Jackson Laboratory

M_GRIA2_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Synaptic transmission1
Decreased
Description: Decreased cerebellar long term depression in purkinje cells
Exp Paradigm: Whole-cell voltage clamp recordings in purkinje cell culture system
 Whole-cell patch clamp
 Unreported
Miniature post synaptic current amplitude: excitatory1
Abnormal
Description: Abnormal mepsc with no change in basal amplitude but no depression in response to pda
Exp Paradigm: Whole-cell recordings of purkinje cells and chemical ltd induction with pda after transfection of mutant gria2 k882a construct
 Whole-cell patch clamp
 Unreported
Synaptic plasticity: ltd1
Decreased
Description: Decreased induction of long term depression in granule cell-purkinje cell pairs after transfection of mutant gria2
Exp Paradigm: Whole-cell voltage clamp recordings after induction with epscs in granule cell - purkinje cell pairs after transfection of expression construct encoding gria2 k882a mutants
 Whole-cell patch clamp
 Unreported
Ion influx and permeability: calcium1
Increased
Description: Increased calcium permeability in purkinje cells
Exp Paradigm: Calcium influx measurements in response to exogenous ampa
 Microfluorimetric imaging
 Unreported
Synaptic transmission1
Decreased
Description: Decreased cerebellar long term depression induction in purkinje cells
Exp Paradigm: Whole-cell voltage clamp recordings after chemical induction and after transfection of k882a & s880e mutant gria2 constructs
 Whole-cell patch clamp
 Unreported
Miniature post synaptic current amplitude: excitatory1
Decreased
Description: Decreased basal amplitude of mepsc's and no depression in mepsc amplitude in response to pda treatment in purkinje cells
Exp Paradigm: Whole-cell recordings of purkinje cells and chemical ltd induction with pda after transfection of mutant gria2 s880e construct
 Whole-cell patch clamp
 Unreported
Synaptic transmission1
Decreased
Description: Decreased cerebellar long term depression in purkinje cells after transfection of mutant gria2
Exp Paradigm: Whole-cell voltage clamp recordings in purkinje cell culture system after transfection of expression construct encoding gria2 k882a and gria2 s880e mutants
 Whole-cell patch clamp
 Unreported
Miniature post synaptic current amplitude: excitatory1
Decreased
Description: Decreased basal amplitude of mepsc's and no depression in mepsc amplitude in response to pda treatment in purkinje cells
Exp Paradigm: Whole-cell recordings of purkinje cells and chemical ltd induction with pda
 Whole-cell patch clamp
 Unreported
Ion influx and permeability: calcium1
 No change
 Microfluorimetric imaging
 Unreported
Ion influx and permeability: calcium1
 No change
 Microfluorimetric imaging
 Unreported
Miniature post synaptic current amplitude: excitatory1
 No change
 Whole-cell patch clamp
 Unreported
Synaptic transmission1
 No change
 Whole-cell patch clamp
 Unreported
Synaptic transmission1
 No change
 Whole-cell patch clamp
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

 

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