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Relevance to Autism

A recurrent missense variant in the GRIA1 gene (p.Ala636Thr) was originally reported as de novo variants in patients with developmental delay/intellectual disability (De Ligt et al., 2012) and ASD (De Rubeis et al., 2014); the same variant was subsequently identified in three additional patients with a primary diagnosis of ASD (de novo in one case, unknown inheritance in the other two) in Geisheker et al., 2017. The p.Ala636Thr variant was not observed in over 60,000 individuals in ExAC (compared to being observed in 5 NDD cases, three of which were de novo; P=5.39E-03, one-tailed binomial test, genome-wide correction), and functional analysis of this variant using whole-cell voltage-clamp recordings of transfected HEK293 cells demonstrated a gain-of-function effect. Ismail et al., 2022 reported seven unrelated individuals with rare GRIA1 variants presenting with a neurodevelopmental syndrome characterized by intellectual disability, language impairment, and behavioral abnormalities (including autism spectrum disorder in three individuals); subsequent functional assessment of GRIA1 variants in this study showed that three of the four missense variants significantly disrupted receptor function, whereas a homozygous nonsense variant completely abolished expression of GluA1-containing AMPARs.

Molecular Function

Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. These receptors are heteromeric protein complexes with multiple subunits, each possessing transmembrane regions, and all arranged to form a ligand-gated ion channel. The classification of glutamate receptors is based on their activation by different pharmacologic agonists. This gene belongs to a family of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) receptors.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
ASD
DD, ID
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
DD, ID
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
DD, ID
Recent Recommendation
Identification and functional evaluation of GRIA1 missense and truncation variants in individuals with ID: An emerging neurodevelopmental syndrome
ID
ASD, ADHD
Recent Recommendation
Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN915R001 
 missense_variant 
 c.1936G>A 
 p.Ala646Thr 
 De novo 
  
  
 GEN915R002 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 De novo 
  
 Simplex 
 GEN915R003 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 De novo 
  
 Simplex 
 GEN915R004 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 Unknown 
 Not maternal 
 Unknown 
 GEN915R005 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 Unknown 
 Not maternal 
 Simplex 
 GEN915R006 
 missense_variant 
 c.1880T>C 
 p.Ile627Thr 
 De novo 
  
  
 GEN915R007 
 missense_variant 
 c.653G>A 
 p.Arg218His 
 De novo 
  
 Simplex 
 GEN915R008 
 missense_variant 
 c.1918G>T 
 p.Val640Leu 
 Familial 
 Paternal 
  
 GEN915R009 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 Unknown 
 Not maternal 
  
 GEN915R010 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 Unknown 
 Not maternal 
  
 GEN915R011 
 missense_variant 
 c.1994G>A 
 p.Gly665Asp 
 De novo 
  
 Simplex 
 GEN915R012 
 missense_variant 
 c.329C>T 
 p.Thr110Met 
 De novo 
  
 Multiplex 
 GEN915R013 
 missense_variant 
 c.603C>A 
 p.Asp201Glu 
 Unknown 
  
  
 GEN915R014a 
 stop_gained 
 c.1129C>T 
 p.Arg377Ter 
 Familial 
 Both parents 
  
 GEN915R015 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 De novo 
  
  
 GEN915R016 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 De novo 
  
  
 GEN915R017 
 missense_variant 
 c.1034G>A 
 p.Arg345Gln 
 Unknown 
  
  
 GEN915R018 
 missense_variant 
 c.1496G>A 
 p.Arg499Gln 
 De novo 
  
  
 GEN915R019 
 missense_variant 
 c.1906G>A 
 p.Ala636Thr 
 Unknown 
  
 Unknown 
 GEN915R020 
 missense_variant 
 c.1913C>G 
 p.Ser638Cys 
 De novo 
  
  
 GEN915R021 
 missense_variant 
 c.772G>A 
 p.Ala258Thr 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 1
 

No Animal Model Data Available

 

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