Summary Statistics:
ASD Reports: 10
Recent Reports: 1
Annotated variants: 18
Associated CNVs: 3
Evidence score: 2
Gene Score: 3
Relevance to Autism
A de novo deletion involving the GPHN gene was identified in an ASD case from a simplex family (Prasad et al., 2012). Screening of 8775 cases with ASD, schizophrenia, or epilepsy and 27,019 controls for GPHN deletions determined that experimentally validated deletions in GPHN were significantly greater in cases than in controls (6/8,775 vs. 3/27,019; Fisher's exact two-sided P=0.009); three of the cases with GPHN deletions in this study were diagnosed with ASD (Lionel et al., 2013).
Molecular Function
This gene encodes a neuronal assembly protein that anchors inhibitory neurotransmitter receptors to the postsynaptic cytoskeleton via high affinity binding to a receptor subunit domain and tubulin dimers. In nonneuronal tissues, the encoded protein is also required for molybdenum cofactor biosynthesis. Mutations in this gene may be associated with the neurological condition hyperplexia and also lead to molybdenum cofactor deficiency.
References
Primary
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Simultaneous impairment of neuronal and metabolic function of mutated gephyrin in a patient with epileptic encephalopathy.
ID, epilepsy/seizures
Support
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
ASD
Support
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
ASD
ID
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Support
Rare exonic deletions implicate the synaptic organizer Gephyrin (GPHN) in risk for autism, schizophrenia and seizures.
ASD, SCZ
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Identification of genetic causes of congenital neurodevelopmental disorders using genome wide molecular technologies.
DD, epilepsy/seizures
Support
Forebrain-specific loss of synaptic GABAA receptors results in altered neuronal excitability and synaptic plasticity in mice.
Recent Recommendation
Exonic microdeletions of the gephyrin gene impair GABAergic synaptic inhibition in patients with idiopathic generalized epilepsy.
Epilepsy
GEN505R001
copy_number_loss
De novo
Simplex
GEN505R002
copy_number_loss
De novo
Simplex
GEN505R003
copy_number_loss
Familial
Paternal
Simplex
GEN505R004
copy_number_loss
De novo
Simplex
GEN505R005
copy_number_loss
Unknown
Simplex
GEN505R006
copy_number_loss
De novo
Simplex
GEN505R007
copy_number_loss
Familial
Maternal
Multi-generational
GEN505R008
copy_number_loss
Familial
Paternal
Unknown
GEN505R009
copy_number_loss
Familial
Paternal
Simplex
GEN505R010
copy_number_loss
Familial
Paternal
Multi-generational
GEN505R011
copy_number_loss
De novo
GEN505R012
missense_variant
c.1124G>A
p.Gly375Asp
De novo
Simplex
GEN505R013
copy_number_gain
Unknown
GEN505R014
missense_variant
c.100C>T
p.Arg34Cys
De novo
GEN505R015
missense_variant
c.752G>A
p.Arg251His
De novo
GEN505R016
missense_variant
c.1484A>G
p.Glu495Gly
De novo
Simplex
GEN505R017
missense_variant
c.1685A>G
p.Glu562Gly
De novo
GEN505R018
frameshift_variant
c.1620del
p.Asn541MetfsTer4
Unknown
No Common Variants Available
14
Deletion-Duplication
19
No Animal Model Data Available
Summary Statistics:
Total Interactions: 45
Total Publications: 23
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Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ACADVL
acyl-CoA dehydrogenase, very long chain
37
P49748
Y2H
Wang J , et al. 2011
ARHGEF9
Cdc42 guanine nucleotide exchange factor (GEF) 9
23229
O43307
IP/WB; Y2H
Kins S , et al. 1999
ARHGEF9
Cdc42 guanine nucleotide exchange factor (GEF) 9
23229
O43307
Y2H
Um JW , et al. 2016
BRCC3
BRCA1/BRCA2-containing complex, subunit 3
79184
P46736
AP-MS; Y2H
Kristensen AR , et al. 2012
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP
Ascano M Jr , et al. 2012
GABRA3
gamma-aminobutyric acid (GABA) A receptor, alpha 3
2556
P34903
in vitro binding assay; Surface plasmon resonance (SPR)
Dejanovic B , et al. 2015
GLRB
glycine receptor, beta
2743
P48167
ITC
Dejanovic B , et al. 2015
GLRB
glycine receptor, beta
2743
P48167
IP/WB
Meyer G , et al. 1995
GPHN
gephyrin
10243
Q9NQX3
Y2H
Wang J , et al. 2011
GPHN
gephyrin
10243
Q9NQX3
Size-exclusion chromatography (SEC); IP/WB
Dejanovic B , et al. 2015
GRIP1
glutamate receptor interacting protein 1
23426
Q9Y3R0
IP/WB; GST
Yu W , et al. 2008
IQSEC2
IQ motif and Sec7 domain 2
23096
Q5JU85
Y2H; IP/WB
Um JW , et al. 2016
IQSEC3
IQ motif and Sec7 domain 3
440073
Q9UPP2
Y2H; IP/WB; Co-localization; in vitro binding assay
Um JW , et al. 2016
KHDRBS1
KH domain containing, RNA binding, signal transduction associated 1
10657
Q07666
Y2H
Wang J , et al. 2011
KLKB1
Plasma kallikrein
3818
P03952
IP; LC-MS/MS
Huttlin EL , et al. 2015
KMO
Kynurenine 3-monooxygenase
8564
O15229-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
LGALS3BP
lectin, galactoside-binding, soluble, 3 binding protein
3959
Q08380
IP; LC-MS/MS
Huttlin EL , et al. 2015
MTA2
metastasis associated 1 family, member 2
9219
O94776
AP-MS; Y2H
Kristensen AR , et al. 2012
MTOR
mechanistic target of rapamycin (serine/threonine kinase)
2475
P42345
IP/WB; Y2H
Sabatini DM , et al. 1999
MTOR
mechanistic target of rapamycin (serine/threonine kinase)
2475
P42345
IP/WB
Machado CO , et al. 2015
MTOR
mechanistic target of rapamycin (serine/threonine kinase)
2475
P42345
Y2H
Um JW , et al. 2016
ODF3L2
outer dense fiber of sperm tails 3-like 2
284451
Q3SX64
IP; LC-MS/MS
Huttlin EL , et al. 2015
OTUD4
OTU domain containing 4
54726
Q01804
LC-MS/MS
Sowa ME , et al. 2009
PAAF1
proteasomal ATPase-associated factor 1
80227
Q9BRP4
AP-MS; Y2H
Kristensen AR , et al. 2012
PCK1
phosphoenolpyruvate carboxykinase 1 (soluble)
5105
P35558
Affinity Capture-MS
Jiang W , et al. 2011
PFN1
profilin 1
5216
P07737
GST; IP/WB
Mammoto A , et al. 1998
PIN1
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
5300
Q13526
IP/WB; GST
Zita MM , et al. 2007
PPP4R1
protein phosphatase 4, regulatory subunit 1
9989
Q8TF05
AP-MS; Y2H
Kristensen AR , et al. 2012
PRPF4
PRP4 pre-mRNA processing factor 4 homolog (yeast)
9128
O43172
LC-MS/MS
Sowa ME , et al. 2009
PRPF4
PRP4 pre-mRNA processing factor 4 homolog (yeast)
9128
O43172
IP; LC-MS/MS
Huttlin EL , et al. 2015
ROCK2
Rho-associated, coiled-coil containing protein kinase 2
9475
O75116
AP-MS; Y2H
Kristensen AR , et al. 2012
SPATS1
spermatogenesis associated, serine-rich 1
221409
Q496A3
Y2H
Wang J , et al. 2011
SPTAN1
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
6709
Q13813
AP-MS; Y2H
Kristensen AR , et al. 2012
SRGAP2
SLIT-ROBO Rho GTPase activating protein 2
23380
O75044
IP/WB; Co-localization
Fossati M , et al. 2016
STS
steroid sulfatase (microsomal), isozyme S
412
P08842
IP; LC-MS/MS
Huttlin EL , et al. 2015
TSSK1B
Testis-specific serine/threonine-protein kinase 1
83942
Q9BXA7
IP; LC-MS/MS
Huttlin EL , et al. 2015
UBC
ubiquitin C
7316
P63279
LC-MS/MS
Danielsen JM , et al. 2010
Rbfox1
RNA binding protein, fox-1 homolog (C. elegans) 1
268859
Q9JJ43
HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
DYNLL1
dynein light chain LC8-type 1
58945
P63170
IP/WB; Y2H; GST
Fuhrmann JC , et al. 2002
DYNLL2
dynein light chain LC8-type 2
140734
Q78P75
IP/WB; Y2H; GST
Fuhrmann JC , et al. 2002
ENAH
enabled homolog (Drosophila)
360891
Q5XHX3
IP/WB
Giesemann T , et al. 2003
GABARAP
GABA(A) receptor-associated protein
58974
P60517
IP/WB; Y2H
Kneussel M , et al. 2000
Gabrg2
gamma-aminobutyric acid (GABA) A receptor, gamma 2
29709
P18508
IP/WB
Wang CY , et al. 2015
GAP43
growth associated protein 43
29423
P07936
IP; LC-MS/MS; Co-localization; IP/WB
Wang CY , et al. 2015
TUBA1A
tubulin, alpha 1A
64158
P68370
IP/WB
Kirsch J , et al. 1991