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Relevance to Autism

Two de novo missense variants that were predicted to be probably damaging (defined as MPC 2) were identified in the GNAI1 gene in ASD probands from the Simons Simplex Collection and the Autism Sequencing Consortium (De Rubeis et al., 2014; Iossifov et al., 2014), while a protein-truncating variant in this gene was observed in a case sample from the Danish iPSYCH study (Satterstrom et al., 2020). TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified GNAI1 as a candidate gene with a false discovery rate (FDR) between 0.01 and 0.05 (0.01 < FDR 0.05).

Molecular Function

Guanine nucleotide binding proteins are heterotrimeric signal-transducing molecules consisting of alpha, beta, and gamma subunits. The alpha subunit binds guanine nucleotide, can hydrolyze GTP, and can interact with other proteins. The protein encoded by this gene represents the alpha subunit of an inhibitory complex. The encoded protein is part of a complex that responds to beta-adrenergic signals by inhibiting adenylate cyclase.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
DD, ID, epilepsy/seizures
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
DD, ID
Recent recommendation
Variants in GNAI1 cause a syndrome associated with variable features including developmental delay, seizures, and hypotonia
DD, ID
ASD, epilepsy/seizures
Recent recommendation
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1154R001 
 missense_variant 
 c.956T>C 
 p.Ile319Thr 
 De novo 
  
 Simplex 
 GEN1154R002 
 missense_variant 
 c.611A>G 
 p.Gln204Arg 
 De novo 
  
 Simplex 
 GEN1154R003 
 missense_variant 
 c.118G>C 
 p.Gly40Arg 
 De novo 
  
  
 GEN1154R004 
 missense_variant 
 c.118G>C 
 p.Gly40Arg 
 De novo 
  
  
 GEN1154R005 
 missense_variant 
 c.118G>T 
 p.Gly40Cys 
 Familial 
 Maternal 
  
 GEN1154R006 
 missense_variant 
 c.118G>T 
 p.Gly40Cys 
 De novo 
  
  
 GEN1154R007 
 missense_variant 
 c.134G>A 
 p.Gly45Asp 
 De novo 
  
  
 GEN1154R008 
 missense_variant 
 c.-14C>A 
  
 De novo 
  
  
 GEN1154R009 
 missense_variant 
 c.143C>A 
 p.Thr48Lys 
 De novo 
  
  
 GEN1154R010 
 missense_variant 
 c.143C>A 
 p.Thr48Lys 
 De novo 
  
  
 GEN1154R011 
 missense_variant 
 c.143C>T 
 p.Thr48Ile 
 De novo 
  
  
 GEN1154R012 
 missense_variant 
 c.143C>T 
 p.Thr48Ile 
 De novo 
  
  
 GEN1154R013 
 missense_variant 
 c.155A>C 
 p.Gln52Pro 
 De novo 
  
  
 GEN1154R014 
 inframe_deletion 
 c.222_224del 
 p.Ser75del 
 De novo 
  
  
 GEN1154R015 
 inframe_deletion 
 c.514_516del 
 p.Gln172del 
 De novo 
  
  
 GEN1154R016 
 inframe_deletion 
 c.514_516del 
 p.Gln172del 
 De novo 
  
  
 GEN1154R017 
 missense_variant 
 c.518A>T 
 p.Asp173Val 
 De novo 
  
  
 GEN1154R018 
 inframe_deletion 
 c.556_567del 
 p.Glu186_Phe189del 
 De novo 
  
  
 GEN1154R019 
 missense_variant 
 c.671G>A 
 p.Cys224Tyr 
 De novo 
  
  
 GEN1154R020 
 missense_variant 
 c.671G>A 
 p.Cys224Tyr 
 De novo 
  
  
 GEN1154R021 
 missense_variant 
 c.809A>G 
 p.Lys270Arg 
 De novo 
  
  
 GEN1154R022 
 missense_variant 
 c.809A>G 
 p.Lys270Arg 
 De novo 
  
  
 GEN1154R023 
 missense_variant 
 c.810G>C 
 p.Lys270Asn 
 De novo 
  
  
 GEN1154R024 
 frameshift_variant 
 c.676dup 
 p.Ile226AsnfsTer20 
 De novo 
  
  
 GEN1154R025 
 missense_variant 
 c.976G>C 
 p.Ala326Pro 
 De novo 
  
  
 GEN1154R026 
 missense_variant 
 c.995T>A 
 p.Val332Glu 
 De novo 
  
  
 GEN1154R027 
 missense_variant 
 c.14T>C 
 p.Leu5Pro 
 Unknown 
  
  
 GEN1154R028 
 frameshift_variant 
 c.548delG 
 p.Gly183GlufsTer36 
 Unknown 
  
  
 GEN1154R029 
 missense_variant 
 c.262A>G 
 p.Met88Val 
 Unknown 
  
  
 GEN1154R030 
 inframe_deletion 
 c.514_516del 
 p.Gln172del 
 De novo 
  
  
  et al.  
 GEN1154R031 
 missense_variant 
 c.815A>G 
 p.Asp272Gly 
 De novo 
  
 Multiplex (monozygotic twins) 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Deletion
 2
 
7
Deletion
 3
 
7
Deletion-Duplication
 24
 
7
Duplication
 3
 

No Animal Model Data Available

 

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