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Relevance to Autism

A nonsense variant in the GLI3 gene was identified in an individual from the Children's Neurodevelopmental Center, Hasbro Children's Hospital who was diagnosed with ASD and presented with dysmorphic features, sensorineural hearing loss, postaxial polydactyly of the hands and feet, right hydronephrosis, global developmental delay, aggression, self-injurious behavior, sensory processing disorder, anxiety, ADHD, and motor stereotypies (Lob et al., 2024). Siracusano et al., 2019 had previously described a 7-year-old Italian male with Greig cephalopolysyndactyly syndrome and a comorbid diagnosis of autism spectrum disorder who had inherited a frameshift variant in the GLI3 gene from his father, who also had Greig cephalopolysyndactyly syndrome and presented with subclinical autistic symptoms. Two de novo missense variants and a de novo coding-synonymous variant in this gene have also been identified in ASD probands from the Autism Sequencing Consortium and the Simons Simplex Collection (De Rubeis et al., 2014; Iossifov et al., 2014; Satterstrom et al., 2020).

Molecular Function

This gene encodes a protein which belongs to the C2H2-type zinc finger proteins subclass of the Gli family. They are characterized as DNA-binding transcription factors and are mediators of Sonic hedgehog (Shh) signaling. The protein encoded by this gene localizes in the cytoplasm and activates patched Drosophila homolog (PTCH) gene expression. It is also thought to play a role during embryogenesis. Mutations in this gene have been associated with several diseases, including Greig cephalopolysyndactyly syndrome, Pallister-Hall syndrome, preaxial polydactyly type IV, and postaxial polydactyly types A1 and B.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genetic Diagnostic Yield in Autism Spectrum Disorder (ASD) and Epilepsy Phenotypes in Children with Genetically Defined ASD
ASD
ADHD, DD
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Autistic symptoms in Greig cephalopolysyndactyly syndrome: a family case report
Greig cephalopolysyndactyly syndrome, ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Analyzing the genetic profile of autistic children and adolescents with minimal verbal abilities
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1465R001 
 stop_gained 
 c.4408C>T 
 p.Gln1470Ter 
 Unknown 
  
  
 GEN1465R002 
 frameshift_variant 
 c.3677del 
 p.Pro1226GlnfsTer4 
 Familial 
 Paternal 
  
 GEN1465R003 
 missense_variant 
 c.3215A>C 
 p.Asn1072Thr 
 De novo 
  
  
 GEN1465R004 
 synonymous_variant 
 c.4428C>T 
 p.Asn1476= 
 De novo 
  
 Simplex 
 GEN1465R005 
 missense_variant 
 c.929T>A 
 p.Ile310Lys 
 De novo 
  
  
 GEN1465R006 
 missense_variant 
 c.2993C>A 
 p.Pro998Gln 
 De novo 
  
  
 GEN1465R007 
 missense_variant 
 c.1906G>T 
 p.Ala636Ser 
 De novo 
  
  
 GEN1465R008a 
 splice_site_variant 
 c.-54+5del 
 p.? 
 De novo 
  
  
 GEN1465R008b 
 splice_region_variant 
 c.-54+4A>T 
 p.? 
 De novo 
  
  
 GEN1465R009 
 frameshift_variant 
 c.3677del 
 p.Pro1226GlnfsTer4 
 Familial 
 Paternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion-Duplication
 22
 
7
Deletion-Duplication
 2
 
7
Duplication
 1
 
7
Deletion
 2
 

No Animal Model Data Available

 

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