Summary Statistics:
ASD Reports: 12
Recent Reports: 0
Annotated variants: 68
Associated CNVs: 6
Evidence score: 3
Gene Score:
Relevance to Autism
Multiple de novo variants in the GABRG2 gene, including a de novo loss-of-function variant and several de novo missense variants that are predicted to be deleterious, have been identified in ASD probands (De Rubeis et al., 2014; Zhou et al., 2022; Miyake et al., 2023); two of the ASD-associated missense variants in this gene had previously been identified in individuals with developmental and epileptic encephalpathy in Shen et al., 2016 and experimentally shown to result in reduced surface expression and decreased GABA-evoked whole-cell current amplitudes. Additional loss-of-function and missense variants with CADD scores > 30 were reported in individuals with a primary diagnosis of ASD in Wang et al., 2020. Hand stereotypies were reported in 1 of 8 individuals with de novo GABRG2 missense variants resulting in developmental and epileptic encephalopathy in Shen et al., 2016, and autism spectrum disorder was diagnosed in a patient with a p.Pro83Ser missense variant that had previously been identified in a family with idiopathic generalized epilepsy in Komulainen-Ebrahim et al., 2019. A polymorphism in the GABRG2 gene had previously been shown to be overrepresented in ASD cases by haplotype analysis (Sesarini et al., 2015).
Molecular Function
This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitory neurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gated chloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunit classes: alpha, beta, gamma, delta and rho. Mutations in this gene are responsible for developmental and epileptic encephalopathy-74 (DEE74; OMIM 618396) and familial febrile seizures-8 (FEB8; OMIM 607681).
References
Negative Association
Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
DD, epilepsy/seizures
ASD, stereotypy
Support
Developmental and epileptic encephalopathy-74, DD,
Stereotypy
Support
Phenotypic Spectrum in Individuals With Pathogenic GABRG2 Loss- and Gain-of-Function Variants
Epilepsy/seizures
ASD, ADHD, DD, ID
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Genetic and phenotypic landscape of pediatric-onset epilepsy in 142 Indian families: Counseling and therapeutic implications
Epilepsy/seizures
Support
Differential inflammation responses determine the variable phenotypes of epilepsy induced by GABRG2 mutations
Epilepsy/seizures
GEN1401R001
missense_variant
c.968G>A
p.Arg323Gln
De novo
GEN1401R002
frameshift_variant
c.1374del
p.Asp458GlufsTer85
De novo
GEN1401R003
missense_variant
c.1375G>T
p.Val459Phe
De novo
GEN1401R004
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R005
stop_gained
c.44C>A
p.Ser15Ter
Unknown
GEN1401R006
stop_gained
c.44C>A
p.Ser15Ter
Unknown
GEN1401R007
missense_variant
c.1291C>T
p.Arg431Cys
Unknown
GEN1401R008
missense_variant
c.1094C>T
p.Ser365Leu
Unknown
GEN1401R009
missense_variant
c.889G>A
p.Gly297Arg
Unknown
GEN1401R010
stop_gained
c.42_43delinsAA
p.Tyr14_Ser15delinsTer
Unknown
GEN1401R011
stop_gained
c.42_43delinsAA
p.Tyr14_Ser15delinsTer
Unknown
GEN1401R012
stop_gained
c.42_43delinsAA
p.Tyr14_Ser15delinsTer
Unknown
GEN1401R013
missense_variant
c.1291C>T
p.Arg431Cys
Unknown
GEN1401R014
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R015
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R016
missense_variant
c.320T>C
p.Ile107Thr
De novo
Simplex
GEN1401R017
missense_variant
c.844C>T
p.Pro282Ser
De novo
Simplex
GEN1401R018
missense_variant
c.968G>A
p.Cys323Tyr
De novo
Simplex
GEN1401R019
missense_variant
c.968G>A
p.Cys323Tyr
De novo
Simplex
GEN1401R020
missense_variant
c.967C>T
p.Arg323Trp
De novo
Simplex
GEN1401R021
missense_variant
c.1027T>C
p.Phe343Leu
De novo
Simplex
GEN1401R022
missense_variant
c.844C>A
p.Pro282Thr
De novo
Simplex
GEN1401R023
missense_variant
c.917C>T
p.Ser306Phe
De novo
Simplex
GEN1401R024
missense_variant
c.247C>T
p.Pro83Ser
Familial
Paternal
Multiplex
GEN1401R025
missense_variant
c.853C>G
p.Leu285Val
De novo
GEN1401R026
frameshift_variant
c.212_215del
p.Asn71ThrfsTer14
De novo
Simplex
GEN1401R027
frameshift_variant
c.398_399del
p.Lys133SerfsTer26
Familial
Maternal
GEN1401R028
stop_gained
c.406C>T
p.Arg136Ter
Familial
Maternal
GEN1401R029
stop_gained
c.406C>T
p.Arg136Ter
Familial
Paternal
GEN1401R030
frameshift_variant
c.471del
p.Ala158LeufsTer13
Familial
Paternal
GEN1401R031
frameshift_variant
c.555_558del
p.Ile186MetfsTer59
Familial
Maternal
GEN1401R032
stop_gained
c.666G>A
p.Trp222Ter
Familial
Paternal
GEN1401R033
stop_gained
c.670C>T
p.Arg224Ter
Familial
Paternal
GEN1401R034
stop_gained
c.748G>T
p.Glu250Ter
Familial
Maternal
GEN1401R035
frameshift_variant
c.846dup
p.Cys283LeufsTer16
Familial
Maternal
GEN1401R036
stop_gained
c.1192C>T
p.Gln398Ter
Familial
Maternal
GEN1401R037
copy_number_loss
Familial
Maternal
GEN1401R038
copy_number_loss
Familial
Maternal
GEN1401R039
copy_number_loss
Familial
Maternal
GEN1401R040
copy_number_loss
Familial
Paternal
GEN1401R041
splice_site_variant
Unknown
GEN1401R042
splice_site_variant
c.259+2T>G
p.?
Familial
Paternal
GEN1401R043
splice_site_variant
c.549-2A>G
p.?
Familial
Paternal
GEN1401R044
splice_site_variant
c.1153-1G>A
p.?
De novo
Simplex
GEN1401R045
missense_variant
c.247C>A
p.Pro83Thr
Familial
Maternal
GEN1401R046
missense_variant
c.373C>T
p.Arg125Cys
Familial
Paternal
GEN1401R047
missense_variant
c.506T>C
p.Met169Thr
Unknown
GEN1401R048
missense_variant
c.965C>A
p.Ala322Asp
Familial
Paternal
GEN1401R049
missense_variant
c.964G>A
p.Ala322Thr
De novo
Simplex
GEN1401R050
missense_variant
c.968G>A
p.Arg323Gln
De novo
Simplex
GEN1401R051
missense_variant
c.968G>A
p.Arg323Gln
Familial
Maternal
GEN1401R052
missense_variant
c.968G>A
p.Arg323Gln
De novo
Simplex
GEN1401R053
missense_variant
c.967C>T
p.Arg323Trp
De novo
Simplex
GEN1401R054
missense_variant
c.967C>T
p.Arg323Trp
Unknown
GEN1401R055
missense_variant
c.977T>A
p.Leu326His
De novo
Simplex
GEN1401R056
missense_variant
c.980C>T
p.Pro327Leu
Familial
Maternal
GEN1401R057
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R058
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R059
missense_variant
c.316G>A
p.Ala106Thr
Unknown
GEN1401R060
missense_variant
c.316G>A
p.Ala106Thr
De novo
Simplex
GEN1401R061
missense_variant
c.416G>A
p.Ser139Asn
De novo
Simplex
GEN1401R062
missense_variant
c.853C>A
p.Leu285Ile
De novo
Simplex
GEN1401R063
missense_variant
c.254T>A
p.Ile85Lys
Familial
Paternal
GEN1401R064
missense_variant
c.269C>T
p.Thr90Met
De novo
Simplex
GEN1401R065
missense_variant
c.269C>T
p.Thr90Met
Familial
Maternal
Multiplex
GEN1401R066
missense_variant
c.311T>G
p.Val104Gly
De novo
Simplex
GEN1401R067
missense_variant
c.595A>G
p.Met199Val
Familial
Paternal
GEN1401R068
missense_variant
c.1030A>C
p.Ile344Leu
Familial
Maternal
No Common Variants Available
No Animal Model Data Available
No PIN Data Available