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Relevance to Autism

Multiple de novo variants in the GABRG2 gene, including a de novo loss-of-function variant and several de novo missense variants that are predicted to be deleterious, have been identified in ASD probands (De Rubeis et al., 2014; Zhou et al., 2022; Miyake et al., 2023); two of the ASD-associated missense variants in this gene had previously been identified in individuals with developmental and epileptic encephalpathy in Shen et al., 2016 and experimentally shown to result in reduced surface expression and decreased GABA-evoked whole-cell current amplitudes. Additional loss-of-function and missense variants with CADD scores > 30 were reported in individuals with a primary diagnosis of ASD in Wang et al., 2020. Hand stereotypies were reported in 1 of 8 individuals with de novo GABRG2 missense variants resulting in developmental and epileptic encephalopathy in Shen et al., 2016, and autism spectrum disorder was diagnosed in a patient with a p.Pro83Ser missense variant that had previously been identified in a family with idiopathic generalized epilepsy in Komulainen-Ebrahim et al., 2019. A polymorphism in the GABRG2 gene had previously been shown to be overrepresented in ASD cases by haplotype analysis (Sesarini et al., 2015).

Molecular Function

This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitory neurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gated chloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunit classes: alpha, beta, gamma, delta and rho. Mutations in this gene are responsible for developmental and epileptic encephalopathy-74 (DEE74; OMIM 618396) and familial febrile seizures-8 (FEB8; OMIM 607681).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Positive Association
ASD
Negative Association
ASD
Negative Association
Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
DD, epilepsy/seizures
ASD, stereotypy
Support
Developmental and epileptic encephalopathy-74, DD,
Stereotypy
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Epilepsy/seizures
Support
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1401R001 
 missense_variant 
 c.968G>A 
 p.Arg323Gln 
 De novo 
  
  
 GEN1401R002 
 frameshift_variant 
 c.1374del 
 p.Asp458GlufsTer85 
 De novo 
  
  
 GEN1401R003 
 missense_variant 
 c.1375G>T 
 p.Val459Phe 
 De novo 
  
  
 GEN1401R004 
 missense_variant 
 c.316G>A 
 p.Ala106Thr 
 De novo 
  
 Simplex 
 GEN1401R005 
 stop_gained 
 c.44C>A 
 p.Ser15Ter 
 Unknown 
  
  
 GEN1401R006 
 stop_gained 
 c.44C>A 
 p.Ser15Ter 
 Unknown 
  
  
 GEN1401R007 
 missense_variant 
 c.1291C>T 
 p.Arg431Cys 
 Unknown 
  
  
 GEN1401R008 
 missense_variant 
 c.1094C>T 
 p.Ser365Leu 
 Unknown 
  
  
 GEN1401R009 
 missense_variant 
 c.889G>A 
 p.Gly297Arg 
 Unknown 
  
  
 GEN1401R010 
 stop_gained 
 c.42_43delinsAA 
 p.Tyr14_Ser15delinsTer 
 Unknown 
  
  
 GEN1401R011 
 stop_gained 
 c.42_43delinsAA 
 p.Tyr14_Ser15delinsTer 
 Unknown 
  
  
 GEN1401R012 
 stop_gained 
 c.42_43delinsAA 
 p.Tyr14_Ser15delinsTer 
 Unknown 
  
  
 GEN1401R013 
 missense_variant 
 c.1291C>T 
 p.Arg431Cys 
 Unknown 
  
  
 GEN1401R014 
 missense_variant 
 c.316G>A 
 p.Ala106Thr 
 De novo 
  
 Simplex 
 GEN1401R015 
 missense_variant 
 c.316G>A 
 p.Ala106Thr 
 De novo 
  
 Simplex 
 GEN1401R016 
 missense_variant 
 c.320T>C 
 p.Ile107Thr 
 De novo 
  
 Simplex 
 GEN1401R017 
 missense_variant 
 c.844C>T 
 p.Pro282Ser 
 De novo 
  
 Simplex 
 GEN1401R018 
 missense_variant 
 c.968G>A 
 p.Cys323Tyr 
 De novo 
  
 Simplex 
 GEN1401R019 
 missense_variant 
 c.968G>A 
 p.Cys323Tyr 
 De novo 
  
 Simplex 
 GEN1401R020 
 missense_variant 
 c.967C>T 
 p.Arg323Trp 
 De novo 
  
 Simplex 
 GEN1401R021 
 missense_variant 
 c.1027T>C 
 p.Phe343Leu 
 De novo 
  
 Simplex 
 GEN1401R022 
 missense_variant 
 c.844C>A 
 p.Pro282Thr 
 De novo 
  
 Simplex 
 GEN1401R023 
 missense_variant 
 c.917C>T 
 p.Ser306Phe 
 De novo 
  
 Simplex 
 GEN1401R024 
 missense_variant 
 c.247C>T 
 p.Pro83Ser 
 Familial 
 Paternal 
 Multiplex 
 GEN1401R025 
 missense_variant 
 c.853C>G 
 p.Leu285Val 
 De novo 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Duplication
 1
 
5
Deletion-Duplication
 7
 

No Animal Model Data Available

No PIN Data Available
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