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Relevance to Autism

Three de novo missense variants in the GABRB2 gene, including one that was predicted to be damaging (defined as MPC 2), were identified in ASD probands from the Simons Simplex Collection and the Autism Sequencing Consortium (Iossifov et al., 2014; Satterstrom et al., 2020), while two protein-truncating variants in this gene were observed in case samples from the Danish iPSYCH study (Satterstrom et al., 2020). TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified GABRB2 as a candidate gene with a false discovery rate (FDR) between 0.05 and 0.1 (0.05 < FDR 0.1).

Molecular Function

The gamma-aminobutyric acid (GABA) A receptor is a multisubunit chloride channel that mediates the fastest inhibitory synaptic transmission in the central nervous system. This gene encodes GABA A receptor, beta 2 subunit. Heterozygous mutations in this gene are responsible for infantile or early childhood epileptic encephalopathy-2 (IECEE2; OMIM 617829), a neurodevelopmental disorder characterized in most patients by onset of seizures in infancy or childhood and associated with global developmental delay and variable intellectual disability.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Exome sequencing improves the molecular diagnostics of paediatric unexplained neurodevelopmental disorders
DD, ID
Support
Yield of exome sequencing in patients with developmental and epileptic encephalopathies and inconclusive targeted gene panel
DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Recent recommendation
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1166R001 
 missense_variant 
 c.50T>C 
 p.Leu17Ser 
 De novo 
  
 Simplex 
 GEN1166R002 
 missense_variant 
 c.946G>A 
 p.Val316Ile 
 De novo 
  
 Simplex 
 GEN1166R003 
 missense_variant 
 c.1088A>C 
 p.His363Pro 
 De novo 
  
 Simplex 
 GEN1166R004 
 stop_gained 
 c.573C>G 
 p.Tyr191Ter 
 Unknown 
  
  
 GEN1166R005 
 splice_region_variant 
 c.541+7C>T 
  
 De novo 
  
  
 GEN1166R006 
 missense_variant 
 c.895A>C 
 p.Ile299Leu 
 De novo 
  
  
 GEN1166R007 
 missense_variant 
 c.869C>T 
 p.Thr290Ile 
 Familial 
 Maternal 
  
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Duplication
 1
 
5
Deletion-Duplication
 8
 

Model Summary

The GABRB2 KO mice, and HT mice to a lesser extent, display prepulse inhibition (PPI) deficit, locomotor hyperactivity, stereotypy, sociability impairments, spatial-working and spatial-reference memory deficits, reduced depression and anxiety, accelerated pentylenetetrazol (PTZ)-induced seizure, increased susceptibility to audiogenic epilepsy, GABAergic parvalbumin (PV)-positive interneuron dystrophy, astrocyte dystrophy, inreased microglia activation in the frontotemporal corticolimbic regions, decreased newborn neurons in the hippocampus, increased brain levels of oxidative stress and the pro-inflammatory cytokines TNFa and IL6. Risperidone and diazepam ameliorated some phenotypes in GABRB2 KO mice.

References

Type
Title
Author, Year
Primary
Gabrb2-knockout Mice Displayed Schizophrenia-Like and Comorbid Phenotypes With Interneuron-Astrocyte-Microglia Dysregulation
Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mice with genomic deletion of exon7 of Gabrb2 were generated by crossing mice where a genomic fragment containing exon 7 was replaced with a loxP flanked neomycin selection cassette and CMV-Cre mice that expresses Cre recombinase transgene under the control of a human cytomegalovirus (CMV) promoter, active in most cells and tissues.
Allele Type: Knockout
Strain of Origin: 129S7/SvEvBrd-Hprt^b-m2
Genetic Background: C57BL/6*129*SvEvhybrid
ES Cell Line: Not specified
Mutant ES Cell Line: Not specified
Model Source: Taconic Farms, Inc., New York; Sur C et al, J Neurosci, 2001
Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Increased
 Novel cage test
 8-10 weeks
Glial number1
Decreased
 Immunohistochemistry
 10-11 weeks
Neuroreceptor levels: gaba-r: gabaa1
Abnormal
 Quantitative pcr (qrt-pcr)
 10-11 weeks
Cell proliferation: neural precursors1
Decreased
 Immunohistochemistry
 10-11 weeks
Neuroreceptor levels: gaba-r: gabaa1
Abnormal
 Quantitative pcr (qrt-pcr)
 10-11 weeks
Neuronal number: interneurons1
Decreased
 Immunohistochemistry
 10-11 weeks
Oxidative stress in neurons1
Increased
 Measurement of enzyme activity
 10-11 weeks
Stereotypy: climbing1
Increased
 Novel cage test
 8-10 weeks
Seizures1
Increased
 Audiogenic seizure test
 3 weeks, 10 weeks
Seizures1
Increased
 Observation of chemically induced seizures
 3 weeks, 10 weeks
Startle response: acoustic stimulus1
Increased
 Acoustic startle reflex test
 8-10 weeks
Sensorimotor gating1
Decreased
 Prepulse inhibition
 8-10 weeks
Social memory1
Decreased
 Three-chamber social approach test
 9-10 weeks
Social approach1
Decreased
 Three-chamber social approach test
 9-10 weeks
Rearing behavior1
Increased
 Novel cage test
 8-10 weeks
Reproductive function1
Decreased
 Litter size
 8 weeks
Depression1
Decreased
 Tail suspension test
 8-10 weeks
Depression1
Decreased
 Sucrose preference test
 8-10 weeks
Anxiety1
Decreased
 Elevated plus maze test
 8-10 weeks
Cns inflammation1
Increased
 Immunohistochemistry
 10-11 weeks
Cytokine levels: pro-inflammatory1
Increased
 Elisa
 10-11 weeks
Spatial working memory1
Decreased
 Y-maze test
 8-10 weeks
Spatial reference memory1
Decreased
 Morris water maze test
 8-10 weeks
Targeted expression1
Decreased
 Quantitative pcr (qrt-pcr)
 10-11 weeks
Cns inflammation1
 No change
 Immunohistochemistry
 10-11 weeks
Hippocampal morphology1
 No change
 Immunohistochemistry
 10-11 weeks
Neuronal number1
 No change
 Immunohistochemistry
 10-11 weeks
Circling1
 No change
 Novel cage test
 8-10 weeks
Stereotypy1
 No change
 Novel cage test
 8-10 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Maternal behavior, Physiological parameters

 

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