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Relevance to Autism

Two de novo missense variants in the G3BP2 gene have been identified in ASD probands (a p.Leu209Pro missense variant in an ASD proband from the Simons Simplex Collection, and a p.Arg13Trp missense variant in the ASD proband from the Autism Sequencing Consortium) (Iossifov et al., 2014; Satterstrom et al., 2020), while a de novo splice-site variant in this gene was identified in an ASD proband from the MSSNG cohort (Yuen et al., 2017). Enrichment analysis for de novo protein-altering variants in 40,853 probands with neurodevelopmental disorders, including 9,228 individuals with a primary diagnosis of ASD, in Jia et al., 2022 demonstrated that G3BP2 showed an excess of de novo missense variants with a false discovery rate (FDR) less than or equal to 0.01; subsequent functional analysis of G3BP2 missense variants used in this analysis found that three missense variants, including the ASD-associated p.Leu209Pro and p.Arg13Trp missense variants, resulted in significantly fewer stress granule formations under stress conditions compared with wild-type in transfected G3BP2 KO HeLa cells.

Molecular Function

Enables RNA binding activity. Involved in positive regulation of stress granule assembly and protein homooligomerization. Located in cytoplasmic stress granule and cytosol.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Evidence for 28 genetic disorders discovered by combining healthcare and research data
DD, ID
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
DD, ID
Recent Recommendation
De novo variants in genes regulating stress granule assembly associate with neurodevelopmental disorders
ASD, DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1361R001 
 missense_variant 
 c.626T>C 
 p.Leu209Pro 
 De novo 
  
 Simplex 
 GEN1361R002 
 splice_site_variant 
 c.178-2A>G 
  
 De novo 
  
 Multiplex 
 GEN1361R003 
 missense_variant 
 c.37C>T 
 p.Arg13Trp 
 De novo 
  
  
 GEN1361R004 
 missense_variant 
 c.1222A>G 
 p.Lys408Glu 
 De novo 
  
  
 GEN1361R005 
 missense_variant 
 c.451G>A 
 p.Asp151Asn 
 De novo 
  
  
 GEN1361R006 
 missense_variant 
 c.1312C>T 
 p.Arg438Cys 
 De novo 
  
  
 GEN1361R007 
 missense_variant 
 c.1197A>C 
 p.Glu399Asp 
 De novo 
  
  
 GEN1361R008 
 missense_variant 
 c.472G>A 
 p.Glu158Lys 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Duplication
 1
 
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 

No Animal Model Data Available

 

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