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Relevance to Autism

Pan et al., 2024 reported 14 individuals with de novo heterozygous variants in the FRYL gene, including an ASD proband from the SPARK cohort, presenting with a neurodevelopmental disorder characterized by developmental delay, intellectual disability, behavioral problems (including a diagnosis of autism spectrum disorder in five individuals), dysmorphic facial features, and other congenital anomalies; subsequent modeling of four of the FRYL missense variants found in affected individuals in Drosophila identified three with severe or partial loss-of-function effects. Additional de novo variants in this gene, including a de novo splice-site variant and multiple de novo missense variants, have been identified in ASD probands (De Rubeis et al., 2014; Iossifov et al., 2014; Krumm et al., 2015; Yuen et al., 2017; Satterstrom et al., 2020; Zhou et al., 2022).

Molecular Function

Predicted to be involved in cell morphogenesis and neuron projection development. Predicted to be active in cell cortex and site of polarized growth.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
DD, ID
ASD, ADHD, epilepsy/seizures
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1440R001 
 frameshift_variant 
 c.1129_1130del 
 p.Val377AsnfsTer24 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R002 
 frameshift_variant 
 c.1224del 
 p.Lys409ArgfsTer15 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R003 
 frameshift_variant 
 c.1855_1858del 
 p.Val619IlefsTer7 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R004 
 splice_site_variant 
 c.1987-1G>A 
  
 De novo 
  
 Simplex 
  et al.  
 GEN1440R005 
 stop_gained 
 c.2210_2211dup 
 p.Ser738Ter 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R006 
 stop_gained 
 c.4663C>T 
 p.Arg1555Ter 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R007 
 frameshift_variant 
 c.4724del 
 p.Cys1575SerfsTer24 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R008 
 frameshift_variant 
 c.5474_5475del 
 p.Tyr1825CysfsTer22 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R009 
 frameshift_variant 
 c.8079_8080del 
 p.Gln2693HisfsTer4 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R010 
 missense_variant 
 c.328C>T 
 p.Arg110Cys 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R011 
 missense_variant 
 c.4882T>C 
 p.Phe1628Leu 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R012 
 missense_variant 
 c.6884T>C 
 p.Phe2295Ser 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R013 
 missense_variant 
 c.7190G>T 
 p.Ser2397Ile 
 Unknown 
 Not paternal 
  
  et al.  
 GEN1440R014 
 missense_variant 
 c.8852A>G 
 p.Tyr2951Cys 
 De novo 
  
 Simplex 
  et al.  
 GEN1440R015 
 splice_site_variant 
 c.3865+1G>A 
  
 De novo 
  
  
 GEN1440R016 
 missense_variant 
 c.8049A>C 
 p.Glu2683Asp 
 De novo 
  
 Simplex 
 GEN1440R017 
 missense_variant 
 c.2096G>C 
 p.Arg699Pro 
 De novo 
  
 Simplex 
 GEN1440R018 
 missense_variant 
 c.7679G>A 
 p.Arg2560Gln 
 De novo 
  
 Simplex 
 GEN1440R019 
 missense_variant 
 c.1141C>A 
 p.Arg381Ser 
 De novo 
  
 Simplex 
 GEN1440R020 
 missense_variant 
 c.7003T>A 
 p.Ser2335Thr 
 De novo 
  
  
 GEN1440R021 
 missense_variant 
 c.3014A>T 
 p.Asp1005Val 
 De novo 
  
  
 GEN1440R022 
 synonymous_variant 
 c.8619C>G 
 p.Ala2873= 
 De novo 
  
  
 GEN1440R023 
 missense_variant 
 c.7870A>G 
 p.Thr2624Ala 
 De novo 
  
  
 GEN1440R024 
 synonymous_variant 
 c.5679C>A 
 p.Ala1893= 
 De novo 
  
  
 GEN1440R025 
 missense_variant 
 c.2082T>G 
 p.Ile694Met 
 De novo 
  
  
 GEN1440R026 
 synonymous_variant 
 c.3816C>T 
 p.Ser1272= 
 De novo 
  
 Simplex 
 GEN1440R027 
 stop_gained 
 c.7571T>G 
 p.Leu2524Ter 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 2
 
4
Deletion-Duplication
 7
 
4
Duplication
 3
 
4
Duplication
 1
 
4
Duplication
 1
 
4
Duplication
 1
 

No Animal Model Data Available

 

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