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Relevance to Autism

Genome-wide investigation of tandem repeats in 17,231 genomes of families with autism from the Autism Speaks MSSNG project and the Simons Simplex Collection in Trost et al., 2020 identified a rare tandem repeat expansion in the FGF14 gene (chr13:102160822-102162469 (AAGGAG;AAGAGG; AAAGAAGAAG)) in seven unrelated ASD probands. This tandem repeat in FGF14 was observed in more than 0.1% of ASD-affected individuals in this cohort and had a frequency less than 0.1% in unaffected siblings, 1000 Genomes, and 1,612 additional population controls from GTEx and the Mayo Clinic Biobank.

Molecular Function

The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess broad mitogenic and cell survival activities, and are involved in a variety of biological processes, including embryonic development, cell growth, morphogenesis, tissue repair, tumor growth and invasion. A mutation in this gene is associated with autosomal dominant cerebral ataxia (spinocerebellar ataxia-27; OMIM 609307).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-wide detection of tandem DNA repeats that are expanded in autism
ASD
DD, ID, ADHD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1199R001 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R002 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R003 
 microsatellite 
  
  
 Unknown 
  
 Unknown 
 GEN1199R004 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R005 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R006 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R007 
 microsatellite 
  
  
 Unknown 
  
 Simplex 
 GEN1199R008 
 initiator_codon_variant 
 c.1A>G 
 p.Met1? 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
13
Duplication
 1
 
13
Deletion
 1
 
13
Duplication
 2
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Deletion
 1
 
13
N/A
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Duplication
 1
 
13
Deletion-Duplication
 2
 
13
Deletion
 1
 
13
Deletion
 1
 
13
Deletion-Duplication
 4
 
13
Deletion
 4
 
13
Duplication
 1
 
13
Deletion-Duplication
 2
 
13
Deletion-Duplication
 8
 
13
Deletion
 6
 

No Animal Model Data Available

 

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