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Relevance to Autism

Fry et al., 2021 demonstrated that missense variants in the N-terminal domain of the A isoform of the FGF13 gene caused an X-linked developmental and epileptic encephalopathy (developmental and epileptic encephalopathy-90; OMIM 301058); all seven affected individuals in this report (two sibling pairs and three unrelated males) presented with intractable focal seizures and severe-profound developmental delay/intellectual disability, and four individuals were diagnosed with autism spectrum disorder. Furthermore, functional characterization of FGF13 missense variants in this report revealed that mutation proteins lost the ability to induce rapid-onset, long-term blockade of wild-type Nav1.6 (SCN8A) channels while retaining pro-excitatory properties, consistent with a gain-of-function effect. Application of sdMAF separately to ASD individual and control cohorts in an X-chromosome-wide association study of 6,873 individuals with autism from MSSNG, SSC, and SPARK (5,639 males and 1,234 females) and 8,981 controls (3,911 males and 5,070 females) in Mendes et al., 2025 identified a statistically significant region including the FGF13 gene in which all SNPs exhibited higher MAFs in males than females [the lead SNP for this region (rs555083289) had a sdMAF P-value of 1.19E-05].

Molecular Function

The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess broad mitogenic and cell survival activities, and are involved in a variety of biological processes, including embryonic development, cell growth, morphogenesis, tissue repair, tumor growth, and invasion. This gene is located in a region on chromosome X, which is associated with Borjeson-Forssman-Lehmann syndrome (BFLS), making it a possible candidate gene for familial cases of the BFLS, and for other syndromal and nonspecific forms of X-linked cognitive disability mapping to this region.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Missense variants in the N-terminal domain of the A isoform of FHF2/FGF13 cause an X-linked developmental and epileptic encephalopathy
Developmental and epileptic encephalopathy-90, DD,
ASD
Positive association
Chromosome X-wide common variant association study in autism spectrum disorder
ASD
Support
Genome Sequencing Identifies 13 Novel Candidate Risk Genes for Autism Spectrum Disorder in a Qatari Cohort
ASD
DD, ID
Support
New Candidates for Autism/Intellectual Disability Identified by Whole-Exome Sequencing
ASD, DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1237R001 
 missense_variant 
 c.50-2045C>T 
  
 Unknown 
  
 Multiplex 
 GEN1237R002 
 missense_variant 
 c.31C>T 
 p.Arg11Cys 
 Familial 
 Maternal 
 Multiplex 
 GEN1237R003 
 missense_variant 
 c.31C>T 
 p.Arg11Cys 
 De novo 
  
 Simplex 
 GEN1237R004 
 missense_variant 
 c.41G>C 
 p.Arg14Thr 
 Unknown 
  
 Multiplex 
 GEN1237R005 
 missense_variant 
 c.32G>C 
 p.Arg11Pro 
 De novo 
  
 Simplex 
 GEN1237R006 
 inframe_deletion 
 c.80_82del 
 p.Cys27_Val28delinsPhe 
 De novo 
  
 Simplex 
 GEN1237R007 
 missense_variant 
 c.545G>T 
 p.Gly182Val 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion
 1
 
X
Duplication
 1
 
X
Deletion-Duplication
 22
 
X
Deletion
 2
 
X
Duplication
 1
 
X
Deletion
 1
 
X
Deletion
 2
 
X
Deletion-Duplication
 1
 
X
Deletion-Duplication
 13
 
X
Duplication
 2
 
X
Deletion
 2
 
X
Deletion-Duplication
 8
 

No Animal Model Data Available

 

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