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Relevance to Autism

A de novo splice-site variant in the FCRL6 gene was identified in an ASD proband from the Simons Simplex Collection in Sanders et al., 2012. Additional loss-of-function and damaging missense variants in this gene were identified in ASD probands from the Autism Sequencing Consortium in De Rubeis et al., 2014. Rare inherited loss-of-function variants in FCRL6 were identified in ASD probands from the Simons Simplex Collection in Krumm et al., 2015. Transmission and De Novo Association (TADA) analysis of a combined cohort consisting of 536 Chinese ASD probands and 1457 Chinese controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium, in Guo et al., 2017 identified FCRL6 as an ASD candidate gene with a PTADA of 0.000707.

Molecular Function

This gene is xpressed by cytolytic cells including NK cells, effector and effector-memory CD8+ T-cells and Interacts with PTPN11.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN946R001 
 splice_site_variant 
 c.320-1G>A 
  
 De novo 
  
 Simplex 
 GEN946R002 
 splice_site_variant 
 CGTGGGGAGAAAGGTGAGCT>C 
 p.? 
 Familial 
  
  
 GEN946R003 
 missense_variant 
 c.391A>G 
 p.Arg131Gly 
 Familial 
  
  
 GEN946R004 
 stop_gained 
 C>T 
 p.Gln174Ter 
 Unknown 
  
  
 GEN946R005 
 stop_gained 
 c.1147G>T 
 p.Ala383Ser 
 Unknown 
  
  
 GEN946R006 
 stop_gained 
 C>T 
  
 Unknown 
  
  
 GEN946R007 
 stop_gained 
 C>T 
 p.Gln174Ter 
 Unknown 
  
  
 GEN946R008 
 missense_variant 
 c.701C>T 
 p.Ser234Phe 
 Unknown 
  
  
 GEN946R009 
 missense_variant 
 c.839A>G 
 p.Asn280Ser 
 Unknown 
  
  
 GEN946R010 
 missense_variant 
 c.1079A>G 
 p.His360Arg 
 Unknown 
  
  
 GEN946R011 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R012 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Maternal 
 Simplex 
 GEN946R013 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R014 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R015 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R016 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R017 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R018 
 stop_gained 
 C>T 
 p.Arg130Ter 
 Familial 
 Maternal 
 Simplex 
 GEN946R019 
 stop_gained 
 c.805C>T 
 p.Gln269Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R020 
 stop_gained 
 c.805C>T 
 p.Gln269Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R021 
 stop_gained 
 c.1216C>T 
 p.Gln406Ter 
 Familial 
 Maternal 
 Simplex 
 GEN946R022 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R023 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R024 
 stop_gained 
 c.367C>T 
 p.Arg123Ter 
 Familial 
 Maternal 
 Simplex 
 GEN946R025 
 stop_gained 
 c.805C>T 
 p.Gln269Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R026 
 frameshift_variant 
 c.811_823del 
 p.Ala271ProfsTer20 
 Familial 
 Paternal 
 Simplex 
 GEN946R027 
 stop_gained 
 c.1216C>T 
 p.Gln406Ter 
 Familial 
 Paternal 
 Simplex 
 GEN946R028 
 frameshift_variant 
 c.1271_1272insC 
 p.Glu424AspfsTer4 
 Familial 
 Paternal 
 Simplex 
 GEN946R029 
 frameshift_variant 
 c.1276dup 
 p.Leu426ProfsTer2 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Duplication
 1
 
1
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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