Summary Statistics:
ASD Reports: 9
Recent Reports: 1
Annotated variants: 61
Associated CNVs: 1
Evidence score: 3
Gene Score: 4
Relevance to Autism
Two de novo variants (one nonsense, one missense) in the EPHB2 gene were identified in separate next-generation sequencing reports using ASD probands (Sanders et al., 2012; Kong et al., 2012).
Molecular Function
This gene encodes a member of the Eph receptor family of receptor tyrosine kinase transmembrane glycoproteins. These receptors are composed of an N-terminal glycosylated ligand-binding domain, a transmembrane region and an intracellular kinase domain. They bind ligands called ephrins and are involved in diverse cellular processes including motility, division, and differentiation. A distinguishing characteristic of Eph-ephrin signaling is that both receptors and ligands are competent to transduce a signaling cascade, resulting in bidirectional signaling. This protein belongs to a subgroup of the Eph receptors called EphB. Proteins of this subgroup are distinguished from other members of the family by sequence homology and preferential binding affinity for membrane-bound ephrin-B ligands.
References
Primary
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Rate of de novo mutations and the importance of father's age to disease risk.
ASD, SCZ
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Recent Recommendation
ASD
GEN410R001
stop_gained
c.2572C>T
p.Gln858Ter
De novo
Simplex
GEN410R002
missense_variant
G>A
p.Gly900Ser
De novo
GEN410R003
missense_variant
c.2531G>A
p.Arg844Gln
Familial
Maternal
GEN410R004
missense_variant
c.668G>A
p.Arg223Gln
Familial
Paternal
GEN410R005
missense_variant
c.2731G>A
p.Asp911Asn
Familial
Paternal
GEN410R006
missense_variant
c.2437G>A
p.Gly813Ser
Unknown
Not maternal
GEN410R007
stop_gained
c.3013C>T
p.Arg1005Ter
Unknown
Not maternal
GEN410R008
missense_variant
c.2405G>A
p.Arg802Gln
Familial
Paternal
Simplex
GEN410R009
missense_variant
c.1058G>A
p.Arg353Gln
Familial
Maternal
Simplex
GEN410R010
frameshift_variant
c.3096dup
p.Arg1033AlafsTer9
Unknown
GEN410R011
missense_variant
c.2185C>T
p.Arg729Trp
Familial
Maternal
GEN410R012
missense_variant
c.2308C>T
p.Arg770Cys
Familial
Maternal
GEN410R013
missense_variant
c.254G>A
p.Arg85His
Familial
Maternal
GEN410R014
missense_variant
c.2012C>G
p.Ala671Gly
Familial
Maternal
GEN410R015
missense_variant
c.2408A>G
p.Asp803Gly
Unknown
GEN410R016
missense_variant
c.2582A>G
p.Asp861Gly
Unknown
GEN410R017
missense_variant
c.2599A>T
p.Ile867Phe
Unknown
GEN410R018
missense_variant
c.2773A>T
p.Ile925Phe
Unknown
GEN410R019
missense_variant
c.916C>T
p.Arg306Cys
Unknown
GEN410R020
missense_variant
c.2530C>G
p.Arg844Gly
Unknown
Simplex
GEN410R021
missense_variant
c.2609G>A
p.Arg870Gln
Unknown
GEN410R022
missense_variant
c.1552C>T
p.Arg518Cys
Unknown
GEN410R023
missense_variant
c.1715G>A
p.Arg572His
Unknown
GEN410R024
missense_variant
c.241C>T
p.Arg81Cys
Unknown
GEN410R025
missense_variant
c.1994G>A
p.Arg665Gln
Unknown
GEN410R026
missense_variant
c.2065G>A
p.Val689Met
Unknown
GEN410R027
missense_variant
c.2356G>A
p.Gly786Arg
Unknown
GEN410R028
missense_variant
c.2653C>T
p.Arg885Cys
Unknown
Simplex
GEN410R029
missense_variant
c.2864G>A
p.Arg955Gln
Unknown
GEN410R030
missense_variant
c.2134C>T
p.Arg712Trp
Unknown
GEN410R031
missense_variant
c.2600G>A
p.Arg867His
Unknown
GEN410R032
missense_variant
c.2750C>T
p.Thr917Met
Unknown
GEN410R033
missense_variant
c.2531G>A
p.Arg844Gln
Unknown
GEN410R034
frameshift_variant
c.438del
p.Phe147SerfsTer11
Unknown
GEN410R035
frameshift_variant
c.384del
p.Asn129ThrfsTer8
Unknown
GEN410R036
missense_variant
c.1850A>G
p.Asp617Gly
Unknown
GEN410R037
missense_variant
c.1828C>T
p.Arg610Trp
Unknown
GEN410R038
missense_variant
c.2117C>T
p.Ser706Phe
Unknown
GEN410R039
missense_variant
c.2017G>A
p.Ala673Thr
Unknown
GEN410R040
missense_variant
c.2191G>A
p.Ala731Thr
Unknown
GEN410R041
missense_variant
c.1882G>A
p.Gly628Arg
Unknown
GEN410R042
missense_variant
c.2654G>A
p.Arg885His
Unknown
GEN410R043
missense_variant
c.2723C>T
p.Thr908Met
Unknown
GEN410R044
missense_variant
c.880C>T
p.Arg294Trp
Unknown
GEN410R045
missense_variant
c.880C>T
p.Arg294Trp
Unknown
GEN410R046
missense_variant
c.880C>T
p.Arg294Trp
Unknown
GEN410R047
missense_variant
c.1591+3369C>T
Unknown
GEN410R048
missense_variant
c.1591+3369C>T
Unknown
GEN410R049
missense_variant
c.1702C>T
p.Arg568Trp
Unknown
GEN410R050
missense_variant
c.2170G>T
p.Val724Leu
Unknown
GEN410R051
missense_variant
c.1924G>A
p.Glu642Lys
Unknown
GEN410R052
missense_variant
c.2098G>A
p.Glu700Lys
Unknown
GEN410R053
missense_variant
c.2402G>A
p.Arg801Gln
Unknown
GEN410R054
missense_variant
c.2240C>T
p.Ser747Leu
Unknown
GEN410R055
missense_variant
c.2414C>T
p.Ser805Leu
Unknown
GEN410R056
missense_variant
c.979G>C
p.Ala327Pro
De novo
Simplex
GEN410R057
synonymous_variant
c.2976G>A
p.Arg992%3D
Unknown
GEN410R058
synonymous_variant
c.174G>A
p.Thr58%3D
De novo
Multiplex
GEN410R059
missense_variant
c.595C>T
p.Arg199Cys
De novo
GEN410R060
synonymous_variant
c.690G>A
p.Ala230%3D
De novo
GEN410R061
synonymous_variant
c.2043C>T
p.Asn681%3D
De novo
No Common Variants Available
Summary Statistics:
# of Reports: 1
# of Models: 2
External Links
Model Summary
Both eph mutants showed no change in habituation.
References
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Eph-Gal4 driver line expressing UAS-Eph-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Eph-Gal4 driver line expressing UAS-Eph-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Habituation to aversive stimuli1
No change
Light-off startle jump
adult stage
No change
Light-off startle jump
adult stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Habituation to aversive stimuli1
No change
Light-off startle jump
adult stage
No change
Light-off startle jump
adult stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
Summary Statistics:
Total Interactions: 6
Total Publications: 4
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
EFNB2
ephrin-B2
1948
P52799
IP; LC-MS/MS
Huttlin EL , et al. 2015
RELN
reelin
5649
P78509
IP/WB
Sentrk A , et al. 2011
SPSB2
splA/ryanodine receptor domain and SOCS box containing 2
84727
Q99619
IP; LC-MS/MS
Huttlin EL , et al. 2015
Gria2
glutamate receptor, ionotropic, AMPA2 (alpha 2)
14800
P23819
Proximity ligation assay
Miyamoto T , et al. 2015
Dock9
dedicator of cytokinesis 9
259237
Q63603
IP/WB
Hussain NK , et al. 2015
Gria1
glutamate receptor, ionotropic, AMPA 1
50592
P19490
IP/WB
Hussain NK , et al. 2015